mRNA_E-siliculosus-1a_F_contig1097.668.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1097.668.1
Unique NamemRNA_E-siliculosus-1a_F_contig1097.668.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: D8LGB2_ECTSI (Peroxisomal membrane protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB2_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 3.020e-142
Identity = 202/210 (96.19%), Postives = 203/210 (96.67%), Query Frame = 2 
Query:   77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED 706
            MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLD+KLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQ       IGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED
Sbjct:    1 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDAKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQ-------IGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED 203
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A835Z5E2_9STRA (Peroxisomal membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA)

HSP 1 Score: 318 bits (815), Expect = 3.160e-108
Identity = 154/188 (81.91%), Postives = 170/188 (90.43%), Query Frame = 2 
Query:   77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSV 640
            M+GIWAAYN+AL AQPLLVKA TS TGFTVGDILAQKFI+ + +YDFMRT+RLG+FGALVHGPTGH+FYGMLDSKLPGT PMTVA+KVAIDQTIWNPIFG+MFF+YLGL EGKSVD I +KIK DLATAVMGSWTVWIPAHTINFKFVPTSQRLLYIN+IQ       IGYN+FLSFLGNKKA +D+V
Sbjct:    1 MAGIWAAYNRALTAQPLLVKACTSLTGFTVGDILAQKFINKDAEYDFMRTVRLGSFGALVHGPTGHWFYGMLDSKLPGTAPMTVATKVAIDQTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQ-------IGYNVFLSFLGNKKAPEDAV 181
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A7S2RA66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA66_9STRA)

HSP 1 Score: 282 bits (722), Expect = 5.170e-94
Identity = 134/181 (74.03%), Postives = 148/181 (81.77%), Query Frame = 2 
Query:   89 WAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADD 631
            WAAYN+ L  QPLL KA+TS TGFT+GD+LAQ F+  ++ YD MRT+RLG+FG LVHG TGHYFYG LDSKLPGTKP+TVASKV IDQ  WNP FG+MFFTYLGLAEGKS  DI KKIK DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ       IGYNIFLSFLGNKK DD
Sbjct:   14 WAAYNRLLETQPLLTKALTSMTGFTLGDVLAQNFVDKKEKYDVMRTVRLGSFGLLVHGTTGHYFYGFLDSKLPGTKPVTVASKVLIDQVFWNPCFGIMFFTYLGLAEGKSFADIMKKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------IGYNIFLSFLGNKKVDD 187
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A6S8ZBW9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZBW9_9STRA)

HSP 1 Score: 280 bits (716), Expect = 3.440e-93
Identity = 133/190 (70.00%), Postives = 156/190 (82.11%), Query Frame = 2 
Query:   77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD-YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVK 643
            MSGIWA YNK L AQPLL KA+TS TGFT+GDILAQKF++ + + YD MRT+RLG+FG L+HG TGHYFYGMLDSK+PGTKP+TVA+KVAIDQTIWNPIFG MFF YL + EGK+  D   K+K+DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ       IGYN+FLSFLGNKK +++  K
Sbjct:    1 MSGIWARYNKMLDAQPLLTKALTSLTGFTIGDILAQKFVNEDGNPYDVMRTIRLGSFGFLIHGTTGHYFYGMLDSKMPGTKPITVATKVAIDQTIWNPIFGCMFFGYLNVMEGKTFQDYTNKLKSDLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------IGYNVFLSFLGNKKVEEEPKK 183
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A6S9LPN5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LPN5_HETAK)

HSP 1 Score: 280 bits (715), Expect = 4.570e-93
Identity = 134/189 (70.90%), Postives = 151/189 (79.89%), Query Frame = 2 
Query:   77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVK 643
            MSG+WA YN  L AQPL  KA+TS TGFT+GDILAQKFI+PEDDYD  RT+R+G FG L HGPTGHYFYG LD KLPGT   TVA+KVAIDQ IWNPIFGV FF++LG AEGKS  +I  KIKNDL TAV GSWTVW+PAH INF+F+P+SQRLLYIN+IQ       IGYN+FLSFLGNKK D +  K
Sbjct:    1 MSGLWAKYNAFLEAQPLACKALTSLTGFTIGDILAQKFINPEDDYDVARTVRMGAFGMLFHGPTGHYFYGFLDGKLPGTATTTVATKVAIDQLIWNPIFGVCFFSFLGAAEGKSGGEIVDKIKNDLMTAVTGSWTVWVPAHIINFRFIPSSQRLLYINSIQ-------IGYNMFLSFLGNKKVDGEEEK 182
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A7S2V4A9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A9_9STRA)

HSP 1 Score: 280 bits (715), Expect = 4.890e-93
Identity = 135/189 (71.43%), Postives = 153/189 (80.95%), Query Frame = 2 
Query:   77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVK 643
            M+ +WA YN+ L AQP+L KA+TS TGFT+GDILAQKFI+PE DYD MRT+RLG+FG L HGP+GHYFYG LDSK+ GT    VA+KVAIDQ  WNPIFG +FFTYLGLAEGKS  +I  KIK+DL TAVMGSWTVW+PAH INFKFVP+SQRLLYINTIQ       IGYNIFLSFLGNK AD+   K
Sbjct:    1 MAKLWAKYNQFLDAQPILCKALTSLTGFTIGDILAQKFINPEADYDVMRTIRLGSFGLLFHGPSGHYFYGFLDSKIVGTSTQAVATKVAIDQLFWNPIFGTVFFTYLGLAEGKSGGEIVNKIKSDLKTAVMGSWTVWVPAHIINFKFVPSSQRLLYINTIQ-------IGYNIFLSFLGNKSADEPEKK 182
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A448YW01_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YW01_9STRA)

HSP 1 Score: 279 bits (713), Expect = 8.300e-93
Identity = 136/186 (73.12%), Postives = 149/186 (80.11%), Query Frame = 2 
Query:   77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD-YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADD 631
            M+ IWA YNK L  QPLL K +TS TGFTVGDILAQKFI P D  YD MRT+RLG+FG L HG TGHYFYGMLDSK+PGTKP+TVASKV IDQTIWNPIFG  FF +L  AEGK+ DD  KK+ +DL TAVMGSW VW+PAHTINF F+P SQRLLYINTIQ       IGYNIFLSFLGNKKAD+
Sbjct:    1 MASIWARYNKLLDTQPLLTKCLTSLTGFTVGDILAQKFIEPSDKPYDIMRTIRLGSFGFLFHGSTGHYFYGMLDSKMPGTKPVTVASKVLIDQTIWNPIFGCCFFGFLNFAEGKTWDDYTKKLNSDLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINTIQ-------IGYNIFLSFLGNKKADE 179
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A7S2LHQ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHQ9_9STRA)

HSP 1 Score: 278 bits (712), Expect = 1.600e-92
Identity = 135/188 (71.81%), Postives = 152/188 (80.85%), Query Frame = 2 
Query:   83 GIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD-YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVK 643
            GIW+ YN  L AQPLLVKAMTS TGFT+GDILAQ F++ +   YD MRT+RLG+FG LVHG TGHYFYG LDSKLPGTKP TVASKV IDQTIWNPIFG+MFF YL L EGKS DD +KKI++DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ       IGYN+FLSFLGNKK D +  +
Sbjct:    2 GIWSRYNALLEAQPLLVKAMTSLTGFTIGDILAQNFVNQDGQAYDPMRTIRLGSFGFLVHGTTGHYFYGFLDSKLPGTKPQTVASKVLIDQTIWNPIFGLMFFGYLNLVEGKSFDDYKKKIQSDLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------IGYNVFLSFLGNKKVDGEEAE 182
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: A0A1Z5JSB9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSB9_FISSO)

HSP 1 Score: 278 bits (711), Expect = 1.620e-92
Identity = 133/185 (71.89%), Postives = 149/185 (80.54%), Query Frame = 2 
Query:   77 MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD-YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKAD 628
            MSG+WA YNK L AQPLL KA+TS TGFT+GD+LAQKF+ P D  YD MRT+RLG+FG L+HG TGHYFYG LD KLPGT PMTVA+KVAIDQTIWNPIFG+MFF YL   EGKS +D   KIK DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ       IGYN+FLSFLGNKK +
Sbjct:    1 MSGLWARYNKMLDAQPLLTKALTSLTGFTLGDVLAQKFVEPTDKPYDLMRTVRLGSFGFLIHGTTGHYFYGFLDGKLPGTAPMTVATKVAIDQTIWNPIFGLMFFGYLNFVEGKSFEDYTNKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------IGYNVFLSFLGNKKVE 178
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BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Match: W7TJ93_9STRA (Mpv17-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJ93_9STRA)

HSP 1 Score: 277 bits (709), Expect = 4.910e-92
Identity = 133/191 (69.63%), Postives = 160/191 (83.77%), Query Frame = 2 
Query:   86 IWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD--YDFMRTLRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADD-DSVKSA 649
            +W+ YN AL   PLL+KA+TS TGFT+GD+LAQKF++P+++  YD MRT+RLG+FG LVHGPTGH+FYG LD ++PGT   TVA+KVAIDQ +WNP FGVMFF+YLGLAEGKS  DIQ KIKNDLATAV+GSWTVWIPAH INF+FVP++QRLLYIN+IQ       IGYNIFLSFLGNKK DD + +K+A
Sbjct:    5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQ-------IGYNIFLSFLGNKKVDDTEELKAA 188
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1097.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGB2_ECTSI3.020e-14296.19Peroxisomal membrane protein-related n=1 Tax=Ectoc... [more]
A0A835Z5E2_9STRA3.160e-10881.91Peroxisomal membrane protein-related n=1 Tax=Tribo... [more]
A0A7S2RA66_9STRA5.170e-9474.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S8ZBW9_9STRA3.440e-9370.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6S9LPN5_HETAK4.570e-9370.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V4A9_9STRA4.890e-9371.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A448YW01_9STRA8.300e-9373.12Uncharacterized protein n=2 Tax=Pseudo-nitzschia T... [more]
A0A7S2LHQ9_9STRA1.600e-9271.81Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1Z5JSB9_FISSO1.620e-9271.89Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
W7TJ93_9STRA4.910e-9269.63Mpv17-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1097contigE-siliculosus-1a_F_contig1097:27694..31883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size633
Model size709
Exons4
Ec32 orthologEc-06_002720.1
Ec32 ortholog descriptionperoxisomal membrane protein-related
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsKOG1944@1,KOG1944@2759
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
KEGG Pathwayko04146,map04146
KEGG koko:K13348
Seed eggNOG ortholog2880.D8LGB2
Seed ortholog evalue4.9e-111
Seed ortholog score407.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1097.668.1prot_E-siliculosus-1a_F_contig1097.668.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1097 27770..31883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927599.9803655-UTR-E-siliculosus-1a_F_contig1097:27693..277691622927599.9803655-UTR-E-siliculosus-1a_F_contig1097:27693..27769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1097 27694..27769 +
1696318605.1168933-UTR-E-siliculosus-1a_F_contig1097:27693..277691696318605.1168933-UTR-E-siliculosus-1a_F_contig1097:27693..27769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1097 27694..27769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927599.998388-CDS-E-siliculosus-1a_F_contig1097:27769..279291622927599.998388-CDS-E-siliculosus-1a_F_contig1097:27769..27929Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 27770..27929 +
1696318605.128826-CDS-E-siliculosus-1a_F_contig1097:27769..279291696318605.128826-CDS-E-siliculosus-1a_F_contig1097:27769..27929Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 27770..27929 +
1622927600.0096672-CDS-E-siliculosus-1a_F_contig1097:29296..294121622927600.0096672-CDS-E-siliculosus-1a_F_contig1097:29296..29412Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 29297..29412 +
1696318605.139181-CDS-E-siliculosus-1a_F_contig1097:29296..294121696318605.139181-CDS-E-siliculosus-1a_F_contig1097:29296..29412Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 29297..29412 +
1622927600.0202713-CDS-E-siliculosus-1a_F_contig1097:31324..315491622927600.0202713-CDS-E-siliculosus-1a_F_contig1097:31324..31549Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 31325..31549 +
1696318605.1477997-CDS-E-siliculosus-1a_F_contig1097:31324..315491696318605.1477997-CDS-E-siliculosus-1a_F_contig1097:31324..31549Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 31325..31549 +
1622927600.0340424-CDS-E-siliculosus-1a_F_contig1097:31751..318831622927600.0340424-CDS-E-siliculosus-1a_F_contig1097:31751..31883Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 31752..31883 +
1696318605.1550336-CDS-E-siliculosus-1a_F_contig1097:31751..318831696318605.1550336-CDS-E-siliculosus-1a_F_contig1097:31751..31883Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 31752..31883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1097.668.1

>prot_E-siliculosus-1a_F_contig1097.668.1 ID=prot_E-siliculosus-1a_F_contig1097.668.1|Name=mRNA_E-siliculosus-1a_F_contig1097.668.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=211bp
MSGIWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRT
LRLGTFGALVHGPTGHYFYGMLDSKLPGTKPMTVASKVAIDQTIWNPIFG
VMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPT
SQRLLYINTIQASSFLCQIGYNIFLSFLGNKKADDDSVKSALVPADAGNI
ERFAEDAKED*
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mRNA from alignment at E-siliculosus-1a_F_contig1097:27694..31883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1097.668.1 ID=mRNA_E-siliculosus-1a_F_contig1097.668.1|Name=mRNA_E-siliculosus-1a_F_contig1097.668.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4190bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:27694..31883+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCATGGCAACGGACCACACTTCCTCTCTATACTTTCTCTTTCGATCCTT
CCGCTGCCCCTTTCTCCTAGCACATCATGTCGGGAATATGGGCGGCGTAC
AACAAGGCTTTGGCAGCGCAGCCTCTGCTGGTGAAGGCCATGACGTCCTT
CACCGGGTTCACGGTCGGTGACATCCTCGCGCAAAAGTTCATCAGCCCGG
AAGACGACTACGACTTCATGCGAACGCTGCGGCTAGGTGGGATGGCTGCT
GTAGCTTAGCACCGCCGACACACGCCAAGCGGCCTCGGGGTAGCACTAGT
CTTCCGTTCTGTGCGGCAAGCGTTTGATCGTGGCATCGTGGCGCTCGTCG
CATTTCGGATGAACAGTTTGCTCAAGTCTCTTTCGCACCTCTTCGCTCTA
CGTCATGCCTCGTCATCAGCACAGAACACAGGCTGGCTCTTGCGTGCATA
CACCTTGCATAACCACACCACCATGGCTAAGCGTGAAGGGTTGCTGACAT
GGCATTCCACAGAGGTGCTTCCCCAGGAGTGACCGGCGGTGGTGGGATCG
CGTAAATCCTCGCGGGGCGTGTGTGTTTTTTTCACCGCAACTGGGGCAGA
ACAAAATTGCCCGATAATCTGTGGGGCCCCAACAAGCCATGGCGGATTCA
CAAGCGAGAACCAACCGGCATGTGTACAGCAGCAGCAGCAGCATTAACAA
AAATAGCAGCAGCAGCGACAGGGTATGTTGTCTTTTGAATGTGTTTGGAT
CATGCTACGTAAGAAAATGCGAGTCTTGTTGGTTAACCGCCCGACAAATC
TATTTAATTCTTTCACAGAGACCGGAGGGCGCAGTCAACGCAGGAGTCTT
GTTGCTCTTCACTCGTTGGGTTCGGTAATAACGAGGGTTACCACTAAACG
CAGTTCTTGCGGACCAAGTCGTTGACAGCAGTAGCGTTTTCGCACTGCGC
AGTATTCCATAAACCCTGGCGAGGACAGACAATGGGGAGCGGTGTAGCTG
TTATTGCTGGAATGCGAGGAACCCGTGAGGGTGGATGTATCCAACAAATG
AAAAAAAAAAAAAAATCGGGGCCGCCGGCGTCATGTTTTGCCTTTGGCCC
CTCTCGTGTGTGGAAACAATTTTTTTTTATCCTCGTGCGGTGTGCTCTTT
GCGCGTGTGCTCATACTGCTGCTAGTTTCGTAGCTGTCGACTTGTATAGG
CCAGCAGCGAACGAGCGTACATGTTTACCCCTCCTCTTCATGACGAATTT
GCACACTATTGCAATACAATTGCATCGCCCCAGCCATGCAAGGCTGTACA
ACGTGCACTTGCAGAGGTGCGCGCTGCATGTGAAGTGTCGCGGTAGTACG
TGACACCTGCAGCATTCTTCCGCTCCACACACCATGGCCGTATCTTGTCG
GTTTCCCAGTGGTGATCGGTGCTCTCTCTCGTCTTGATGTACTACCTCTG
GTGCTGCTGTTGCTTCTCCGTCCCCTACTGCTGCCTCTCTGTGGTTGACT
TTCTGTGTCGGCAACGGCGGTACACACAACGGCCGGGGTGTGTGTGGGGG
GGGTGGGGCGGACCGCTGCGGCGTCGGTGGCTGATGATTTTCTTGTCCCG
CAGGCACTTTCGGTGCGCTGGTGCACGGACCGACGGGGCACTACTTCTAC
GGGATGCTTGACTCCAAGCTCCCCGGAACCAAGCCGATGACGGTGGCCTC
GAAGGTGGCCATCGACCAGGTAAGGCGCCCTCTCGGGAGAGATATATGTA
GATGCAAGGCGTTGGGCGCGGGGTCTACTCATAGTCGTGCATGCCGTAGT
CGTTAGACTATTGACCTCGCATCTTTGGGGGGCGGGGGGTGAAAGGCTGA
GAGGTCACTGCTGTCGTCGTCTTGCAGCTCAACCCCATGTAGTTGGTCGA
TCGGCACCACACAGCACTCGTTTTTGTGTATGTTGCACTGCTGTTGCAAA
GTACCGTTTTTTTTCGTCAAGGCGACTACTGTTGGGCGCATGTTTGCATC
GATCACCCTAAACCATGCACCTACGTAGCCATCACGGCGTCATGGCGCGG
CCCGCCTACTGTACACGATTTTTTTGGCCTGCCGACAACCTACGGAGACT
TGTAACACCGGCGTGGGAGATCGATTGCTTTGAGAAGGCTCACTCTCTCT
GTCTCTCTAGAAAGTTTGCTTGACTGGCTCTATTAAGCCGGCTGATGGTG
ATGCGCCAGTATTGCTCGCGTTGTCTACGGGATCAATCGCGTTCTAATCT
AGACGACCATGAAAAGCCTAACGACGAGTCACTCCGTGTTTAGCGTGGGA
AGGGAGATCACTGGTTTCACGCGTGGTTTGTAATTTGTGCACGTGCGCCC
CTCGCGGATTCTGTTACCAGCGGCGGCATCACGTGTGATGTCGCAGTACC
GCATACGGCACGTGCCAAGGTGCGCCTGTTGCCAACGATAGATTAGCACG
GGTAGATAGCAAGTTTTCTTTTGTCGATACTGTGGCCGCCAACCCCAACT
ACGAGCGTACCATGCCACTCTTAGAGATCGACACCTGGGGCAAGAAAAGG
GTTGGGGGAGGTTGTACGGCGTTCAGAAGCCCCTCACTATTGTATGATGG
GGAGGTATCACACCTTGGCGCGCCGTCTGGCGATGTGAGTGGGGTACTGG
GATTGGTTCTGGTGTTGTTGCTGGCGGCGGGGAACCGTCAGAGTTGCACG
CCCTTCAAACTTCCAAGAGAGGTATTGATTCTTCTGTTTGGGCGTCAGCT
TGCGTTTTGGCTGGGTCGGTGCCCGGAGCCCCCGCCGTCGCAAGTGACTT
CCCTTGTGGGGTATGTAGCTTGCCGTTGTGAAGAACGCCCCGGGTGTTGG
TGATGTATCTATTCTGGAGGAGTTGTGGTCTGTGTCGAAAGCGGCGCGAG
GGCATTGTTCAGCTGACTTCCCGAACAGACCACCGAGCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCA
CCCGCTCCACTGGTGNNNNNNNNNNGTTTCTATTTTGGGGGAGGTGTGGT
CTGTGTCGAAAGCGGCGCGGGGGCATTTTTCCGCCGCCTTCCCCAACAGA
CCCCCGGCCCCCCCCCCCCCCCCCCTCGACCCCGTCCTTGTTCAGAACCT
TCCTCGCATCTAGTAGAACTATTGATTCAGGTAGAGTTCGCGGTCACTCC
CTTGCCGCTACACTCGCAGCGAGCGACTCGAATGGCAGCACACCGCCGGC
CGGACAAGATGCTCGACACAACCCCTGGAAAAAATCCTGAAAACGCTATC
CACGCCTTGCCAACGCCACGAGCGGTAGCGTCGAGCTCCTGCTGCGGTCT
CGCAAATTTTGCAACACGTTCTGCACGCGACGAGCACATGCCATCATCCC
CCATCATCCCCCGCGTTCTACACCAAACTAACGAAACCCGGCATATCGTT
CCGTCCCGGCATTGTAGGGATGTGAGGTCTATGGTCTAACGACTACGCCA
TGCGTTTACATGAGTCTCCCCCGTCCTCGCCCTCCCACTTGCCGCTTGTT
GCGGTTCGTCCATCTTGCCGTTCCGGTTGGTTCCGCACACGTGACGGAAC
GCACGGAAACAACCCGGAAAACGCCCAACAGACTATCTGGAACCCCATCT
TCGGTGTGATGTTCTTCACCTACCTGGGGCTGGCGGAGGGCAAGTCGGTC
GACGACATCCAGAAGAAGATCAAGAACGACCTGGCCACCGCGGTCATGGG
GTCCTGGACGGTGTGGATCCCCGCGCACACCATCAACTTTAAGTTCGTGC
CCACGTCGCAGCGGTTGCTCTACATCAACACCATCCAGGCAAGCTCCTTT
TTGTGTGTTTTCTCCCGCTCAACGCGTTTACCGTGGGTGGAGTGTTCGGC
CTCCACTCTCTTTGTAGTCCATGAAGACTTGCTGCGATGATTTTTTGTGT
TCATATGGGCTCCCAGTCAACTCGTCCTAACCCCCCCCCCCTGTGCTACC
CTGCCTACCGAAAACATCGGCAACTGCGGGAAACGACGAACTGCAACGAA
CGTACGAGCAGATCGGGTACAACATCTTCTTGTCTTTCTTGGGCAACAAG
AAGGCGGATGACGACAGCGTCAAGTCGGCACTTGTTCCGGCCGACGCGGG
CAACATCGAGCGCTTTGCTGAGGATGCCAAGGAGGACTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1097:27694..31883+

>mRNA_E-siliculosus-1a_F_contig1097.668.1 ID=mRNA_E-siliculosus-1a_F_contig1097.668.1|Name=mRNA_E-siliculosus-1a_F_contig1097.668.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:27694..31883+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGGGAATATGGGCGGCGTACAACAAGGCTTTGGCAGCGCAGCCTCT
GCTGGTGAAGGCCATGACGTCCTTCACCGGGTTCACGGTCGGTGACATCC
TCGCGCAAAAGTTCATCAGCCCGGAAGACGACTACGACTTCATGCGAACG
CTGCGGCTAGATGTCGGGAATATGGGCGGCGTACAACAAGGCTTTGGCAG
CGCAGCCTCTGCTGGTGAAGGCCATGACGTCCTTCACCGGGTTCACGGTC
GGTGACATCCTCGCGCAAAAGTTCATCAGCCCGGAAGACGACTACGACTT
CATGCGAACGCTGCGGCTAGGCACTTTCGGTGCGCTGGTGCACGGACCGA
CGGGGCACTACTTCTACGGGATGCTTGACTCCAAGCTCCCCGGAACCAAG
CCGATGACGGTGGCCTCGAAGGTGGCCATCGACCAGGCACTTTCGGTGCG
CTGGTGCACGGACCGACGGGGCACTACTTCTACGGGATGCTTGACTCCAA
GCTCCCCGGAACCAAGCCGATGACGGTGGCCTCGAAGGTGGCCATCGACC
AGACTATCTGGAACCCCATCTTCGGTGTGATGTTCTTCACCTACCTGGGG
CTGGCGGAGGGCAAGTCGGTCGACGACATCCAGAAGAAGATCAAGAACGA
CCTGGCCACCGCGGTCATGGGGTCCTGGACGGTGTGGATCCCCGCGCACA
CCATCAACTTTAAGTTCGTGCCCACGTCGCAGCGGTTGCTCTACATCAAC
ACCATCCAGGCAAGCTCCTTTTTGTGTACTATCTGGAACCCCATCTTCGG
TGTGATGTTCTTCACCTACCTGGGGCTGGCGGAGGGCAAGTCGGTCGACG
ACATCCAGAAGAAGATCAAGAACGACCTGGCCACCGCGGTCATGGGGTCC
TGGACGGTGTGGATCCCCGCGCACACCATCAACTTTAAGTTCGTGCCCAC
GTCGCAGCGGTTGCTCTACATCAACACCATCCAGGCAAGCTCCTTTTTGT
GTCAGATCGGGTACAACATCTTCTTGTCTTTCTTGGGCAACAAGAAGGCG
GATGACGACAGCGTCAAGTCGGCACTTGTTCCGGCCGACGCGGGCAACAT
CGAGCGCTTTGCTGAGGATGCCAAGGAGGACTAGCAGATCGGGTACAACA
TCTTCTTGTCTTTCTTGGGCAACAAGAAGGCGGATGACGACAGCGTCAAG
TCGGCACTTGTTCCGGCCGACGCGGGCAACATCGAGCGCTTTGCTGAGGA
TGCCAAGGAGGACTAG
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