mRNA_E-siliculosus-1a_F_contig1094.650.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1094.650.1
Unique NamemRNA_E-siliculosus-1a_F_contig1094.650.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.650.1 vs. uniprot
Match: A0A6H5L995_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L995_9PHAE)

HSP 1 Score: 450 bits (1157), Expect = 1.570e-155
Identity = 250/261 (95.79%), Postives = 251/261 (96.17%), Query Frame = 2 
Query:  212 TASGCWALAVLLALYISPSGAFLAPTKAALGCFHQHRSPSSPTCLSMMARDELGSGRSSSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVXXXXXXXXMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDDSLQQGAKYIESSGDRNAAASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSEGGDQS 994
            T SGC ALAVLL LY SPSGAFLAPTKAALGCFHQHRS SSPTCLSM ARDEL SG  SSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVXXXXXXXXMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLD+SLQQGAKYIESSGDRN AASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSEGGDQS
Sbjct:    2 TGSGCRALAVLLTLYSSPSGAFLAPTKAALGCFHQHRSASSPTCLSMTARDELRSGSISSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVXXXXXXXXMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDESLQQGAKYIESSGDRNTAASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSEGGDQS 262
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.650.1 vs. uniprot
Match: A0A7S2XY69_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY69_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.360e-20
Identity = 55/146 (37.67%), Postives = 89/146 (60.96%), Query Frame = 2 
Query:  554 KATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDDSLQQGAKYIESSGDRNAAASAGREALEYLAQTAEYFPVEVDDRTG----APKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSE 979
            K TKPL +CL +V  V+++TKQLED +TN      +    + L++NYKL+++L+QG +Y+ES+ +R  A    +EALE L    EYFP   D+ TG    +   L+ E ++F+V AL +T   L+ +LS +P + +A+ +  I  +
Sbjct:  118 KPTKPLEECLESVALVQLTTKQLEDDITNGQEIGDIPAQAQLLLRNYKLEENLRQGVQYLESNAERVEATKYAKEALEDLILITEYFPESYDNFTGKRLPSSLTLTPEKIKFSVKALSSTTKALEGYLSTMPVEMVAKVKQSIAED 263
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.650.1 vs. uniprot
Match: A0A7S3TS97_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TS97_9SPIT)

HSP 1 Score: 60.1 bits (144), Expect = 1.770e-6
Identity = 41/146 (28.08%), Postives = 72/146 (49.32%), Query Frame = 2 
Query:  554 KATKPLRDCLLNVERVRISTKQLEDTLTN----DGAPPGLTGLVKGLIKNYKLDDSLQQGAKYIESSGDRNAAASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSE 979
            K+   L++ L  + RV+ +T Q E  ++     D     +   +  ++ NYKL D +   + Y   + +   A+ AG+EA++ L    EYF  E+         L+     F V+A+ ATR KLD FL  +P++ +  AR +++ E
Sbjct:   98 KSVNELQEALYLISRVQEATVQQERLVSTGKFKDMQRNSIKMALNMMLNNYKLGDQIVVASAYASPADNVFKASQAGKEAIDVLETAQEYFAKELK-----VSGLTDTQRSFIVDAMTATRTKLDNFLKFMPAETVQAARKQVEDE 238
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1094.650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L995_9PHAE1.570e-15595.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XY69_9STRA7.360e-2037.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3TS97_9SPIT1.770e-628.08Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1094contigE-siliculosus-1a_F_contig1094:22180..25163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size795
Model size1365
Exons3
Ec32 orthologEc-06_007080.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelBacillariophyta
EggNOG OGs2C1G4@1,2S3K1@2759,2XCB1@2836
Seed eggNOG ortholog159749.K0R908
Seed ortholog evalue1.8e-09
Seed ortholog score70.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1094.650.1prot_E-siliculosus-1a_F_contig1094.650.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1094 22548..24961 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927596.89101-UTR-E-siliculosus-1a_F_contig1094:22179..225471622927596.89101-UTR-E-siliculosus-1a_F_contig1094:22179..22547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1094 22180..22547 -
1696318603.7825463-UTR-E-siliculosus-1a_F_contig1094:22179..225471696318603.7825463-UTR-E-siliculosus-1a_F_contig1094:22179..22547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1094 22180..22547 -
1622927596.9488852-UTR-E-siliculosus-1a_F_contig1094:24961..251631622927596.9488852-UTR-E-siliculosus-1a_F_contig1094:24961..25163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1094 24962..25163 -
1696318603.8491578-UTR-E-siliculosus-1a_F_contig1094:24961..251631696318603.8491578-UTR-E-siliculosus-1a_F_contig1094:24961..25163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1094 24962..25163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927596.906396-CDS-E-siliculosus-1a_F_contig1094:22547..227101622927596.906396-CDS-E-siliculosus-1a_F_contig1094:22547..22710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 22548..22710 -
1696318603.8023906-CDS-E-siliculosus-1a_F_contig1094:22547..227101696318603.8023906-CDS-E-siliculosus-1a_F_contig1094:22547..22710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 22548..22710 -
1622927596.91873-CDS-E-siliculosus-1a_F_contig1094:23497..237121622927596.91873-CDS-E-siliculosus-1a_F_contig1094:23497..23712Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 23498..23712 -
1696318603.814546-CDS-E-siliculosus-1a_F_contig1094:23497..237121696318603.814546-CDS-E-siliculosus-1a_F_contig1094:23497..23712Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 23498..23712 -
1622927596.9332027-CDS-E-siliculosus-1a_F_contig1094:24544..249611622927596.9332027-CDS-E-siliculosus-1a_F_contig1094:24544..24961Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 24545..24961 -
1696318603.8307676-CDS-E-siliculosus-1a_F_contig1094:24544..249611696318603.8307676-CDS-E-siliculosus-1a_F_contig1094:24544..24961Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 24545..24961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1094.650.1

>prot_E-siliculosus-1a_F_contig1094.650.1 ID=prot_E-siliculosus-1a_F_contig1094.650.1|Name=mRNA_E-siliculosus-1a_F_contig1094.650.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=265bp
MYATASGCWALAVLLALYISPSGAFLAPTKAALGCFHQHRSPSSPTCLSM
MARDELGSGRSSSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVK
GLDVSEVMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAP
PGLTGLVKGLIKNYKLDDSLQQGAKYIESSGDRNAAASAGREALEYLAQT
AEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALA
EARAEIKSEGGDQS*
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mRNA from alignment at E-siliculosus-1a_F_contig1094:22180..25163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1094.650.1 ID=mRNA_E-siliculosus-1a_F_contig1094.650.1|Name=mRNA_E-siliculosus-1a_F_contig1094.650.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:22180..25163- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTTGAAGAGCGAGGGTAACAGCACAGGTTGAACACCTCCGCCGCACGTA
CCTCATCAGGACTCTTGCAAGAGTATTACCTGCATTACCCGTTGAAGCGT
TCAAGCATATCAGCAGCTGACGCCTGTAAAGAAGCCGCGGTGACCTGTGC
GTATTTATCTCCCCCTTGCCTCAGGCAGCAGTACTACAAGCAGGCTAGTA
TCATGTACGCAACTGCTTCAGGATGTTGGGCGCTGGCGGTGCTCCTCGCC
TTGTATATATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATT
GGGTTGTTTCCACCAACATCGATCGCCATCTAGCCCTACGTGCTTGTCCA
TGATGGCGCGGGATGAACTCGGCAGTGGCAGAAGCAGCAGCAGTCGGCGA
GGCTTCTTGGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTAT
TGGGCTGCCCGAACCCTCTGTTGCGAAAGGGATCGACTTGTCAGAAGTGA
AGGGCTTGGACGTTAGCGAAGTGATGCACTTGGGCGCTGGCTCGTCGGGC
GGGAAAGCGACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGT
GCGCATCTCCACCAAGCAGGTGAGTAAGAACCGTAGCATAGGAAACAGTA
CTGCTGTGCGGGCGGTGGTTTGATGACACGTACCGTTCGATGTGGGTTCA
TTGGCACTCTCTCTTGCTTCTCGAGCGACAGGGCTAGATCAACGGACTTG
CAAGGCACCGCGAGTTTTCCCTCTGCTGTTTCATGAACGAACGCCATCGG
TATGACCGCTGTGAAACGCACCAATTGGAATAAGAATCCCGCAAGCCGCC
GCATGTGTAAAACAACGTGATCACGGCAAGCCCATGGAACGAGCGGCGGC
ACAGCAGTAGTAGCATAGCAGAGCTCACAACCAAGAGGCCGGTGCTAGGC
AAGAGCTTATGCTGACGGTGTGTGTTTGCGTGCGAAGTCCTTCCGCTAAG
ATACACCCTCCATCGAATACATCCTTTTCGAGCGTAACATAACGTACACC
AATCCGTGTGTTCCAGCGCAGCATGAATCCGGTGTTCGTGTGTGTGTACA
CCTTGAGAGACACTATTATATTGACAAAGGGACGCAGACGGTGGTACAAC
AGGAGTTGCGTTGCGCTAGGGCAGCTGTGTAAACAGAGGGCTGTGGAATT
CAGTCGGCACAGAGCCGCACCACACTCGCTCCATTTACCCCTGTGGTGGC
ATATTTTCCCACTTGGTCTGCGTACCAACTGCGAACCCCACATCAACGAG
TACAGTCAGCTTTTTTTTCGCCCCGTGCTATGTAGAAGGGGGCTTGTTGG
CCGCCATGGAACATACCATCACCGAACCCAATCTTTTAGCATCCCCCCCA
TTCCACCTCTTTTTGGTGGCCGCTATTTTTTTTTGCCTTACCGCCGTCCA
GCTCGAGGACACCCTGACCAACGACGGCGCACCGCCGGGCCTGACCGGGC
TTGTCAAGGGGCTCATCAAGAACTACAAGCTGGACGATAGCCTCCAGCAG
GGTGCCAAGTACATCGAGTCTAGCGGGGATAGAAACGCGGCCGCGTCCGC
GGGGAGAGAGGCGCTGGAGTACCTGGCGCAGACGGCGGAGTACTTTCCCG
TTGAAGTGGATGACAGGTATGTACGTGTACATTTACACATCGGTTCGGCA
CTCAGGCACGTTTGTCTCAAGAGAAAATTGCAAGGTCGTGAGTGATGGCA
GTACTACTTGCAGCACTGATGTACATGTAATAGGGAATTCTCCCTCATTC
TATATATAATAGTTCGCGGCTCTACAGGAGTTCTAGATGCTTGCCATGCT
ACTGGCCCAGCTCTGCCAAGACCGTCCAGAAGCAGCACCTGCAAGAAAAG
CAACAACAGAGCAGCAGCAGCATCATCATCAGCAAATATCTAGCGTGGGT
GCTTGAGGAACTCGGATATTCTGCTGCGGCAGCCTTGAACGACGCTTCGC
TTTTGCCGTAAAGTAGCGGCTGGCGTGCAACGAGTACTATTTGGTTGTTC
AGTATGCGTGCGCGTGGGATGTGCGCGTTGCTTTCTCGCTGCCCTTTGAG
AGAGGTTTGTAATCGCGTTCCGTGCCACCCCAGTGAGCCGAGGTTGAGTC
GGAAGGGGGTAAGCCGGAGGGGGGGGGTGCTCATGTTTTGCATGCCTAGC
GGTTAGACCATTGACCACGCGTCCTCGAGAGGACGGAGCAATTGTTCCGA
CAGGACCGATCACCGATGGCCAATTCGTTCCGAAGGAGGGGTGGGCGTTT
TGTTTGGGGAGGAGGGCGGGAACTTGCACCGTTGGTTTCTATCCTGGCTG
TTCCTTGTCTCCCTCCCCCCTCCGTTCACCTCTTCCCTCTTCACATCTAT
CTGCCCCTTCCCCCCCTTCCTGCATCTCTTCTCGTCACCACACAACCCGT
CAGGACCGGGGCTCCCAAGAAACTCAGCTCGGAAGCTCTCGAGTTCACAG
TAAACGCCCTGATCGCAACCCGAGCAAAACTCGATTTGTTCTTGTCCAAG
GTCCCGTCGGACGCACTAGCAGAGGCCAGGGCAGAGATTAAATCAGAGGG
CGGCGACCAGTCATGAGGCCGGCCTTATGCCCTTGTTGCTGTTGCGGCGG
AATGCGGTCGGCGTCTGTCGTTCCTCAAACCGCGGCTTGTGGTACCCGGG
AATCTGTCTGTAGAGCTGCCTTGTGTCGGCTCCGTGTTTGAATGTTGTCA
GATTTTCCGGTGGGATACGGATATGTATGCGGGGCTAGGCACCGTCTGTG
GACTGCCAAGGTCAAGCGTTATGTCGGAAGAAGGCAATCGTGTAGATCAC
GAGACCTTGTTGGGATTTTTCGTTTTTTCCAGCCAGTAGAAAGTCCTTGC
TTGGCGCTGGTTCTGAACTTCGCACTCGTTGAAAGTATTCGTTTTGTAGG
CATGCAACGGAAGAAGAAAAACGTAGAACTGAAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1094:22180..25163-

>mRNA_E-siliculosus-1a_F_contig1094.650.1 ID=mRNA_E-siliculosus-1a_F_contig1094.650.1|Name=mRNA_E-siliculosus-1a_F_contig1094.650.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1590bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:22180..25163- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACGCAACTGCTTCAGGATGTTGGGCGCTGGCGGTGCTCCTCGCCTT
GTATATATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGG
GTTGTTTCCACCAACATCGATCGCCATCTAGCCCTACGTGCTTGTCCATG
ATGGCGCGGGATGAACTCGGCAGTGGCAGAAGCAGCAGCAGTCGGCGAGG
CTTCTTGGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTG
GGCTGCCCGAACCCTCTGTTGCGAAAGGGATCGACTTGTCAGAAGTGAAG
GGCTTGGACGTTAGCGAAGTGATGCACTTGGGCGCTGGCTCGTCGGGCGG
GAAAGCGACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGC
GCATCTCCACCAAGCAGATGTACGCAACTGCTTCAGGATGTTGGGCGCTG
GCGGTGCTCCTCGCCTTGTATATATCTCCATCTGGCGCCTTCCTAGCTCC
AACGAAGGCAGCATTGGGTTGTTTCCACCAACATCGATCGCCATCTAGCC
CTACGTGCTTGTCCATGATGGCGCGGGATGAACTCGGCAGTGGCAGAAGC
AGCAGCAGTCGGCGAGGCTTCTTGGAGGGGGGGGCTGTTGCCTTGCTAGC
GTCGGTCGCAGCTATTGGGCTGCCCGAACCCTCTGTTGCGAAAGGGATCG
ACTTGTCAGAAGTGAAGGGCTTGGACGTTAGCGAAGTGATGCACTTGGGC
GCTGGCTCGTCGGGCGGGAAAGCGACGAAGCCGCTGAGAGACTGCTTGCT
GAACGTCGAAAGGGTGCGCATCTCCACCAAGCAGCTCGAGGACACCCTGA
CCAACGACGGCGCACCGCCGGGCCTGACCGGGCTTGTCAAGGGGCTCATC
AAGAACTACAAGCTGGACGATAGCCTCCAGCAGGGTGCCAAGTACATCGA
GTCTAGCGGGGATAGAAACGCGGCCGCGTCCGCGGGGAGAGAGGCGCTGG
AGTACCTGGCGCAGACGGCGGAGTACTTTCCCGTTGAAGTGGATGACAGC
TCGAGGACACCCTGACCAACGACGGCGCACCGCCGGGCCTGACCGGGCTT
GTCAAGGGGCTCATCAAGAACTACAAGCTGGACGATAGCCTCCAGCAGGG
TGCCAAGTACATCGAGTCTAGCGGGGATAGAAACGCGGCCGCGTCCGCGG
GGAGAGAGGCGCTGGAGTACCTGGCGCAGACGGCGGAGTACTTTCCCGTT
GAAGTGGATGACAGGACCGGGGCTCCCAAGAAACTCAGCTCGGAAGCTCT
CGAGTTCACAGTAAACGCCCTGATCGCAACCCGAGCAAAACTCGATTTGT
TCTTGTCCAAGGTCCCGTCGGACGCACTAGCAGAGGCCAGGGCAGAGATT
AAATCAGAGGGCGGCGACCAGTCATGAGACCGGGGCTCCCAAGAAACTCA
GCTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCCGAGCA
AAACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCAGAGGC
CAGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGA
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