mRNA_E-siliculosus-1a_F_contig10923.642.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10923.642.1
Unique NamemRNA_E-siliculosus-1a_F_contig10923.642.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: D1J751_ECTSI (50S ribosomal protein L4, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J751_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 1.910e-153
Identity = 225/232 (96.98%), Postives = 229/232 (98.71%), Query Frame = 1
Query:    1 MITFLDFYKRLREKSSSRKDKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696
            MITFLDFYKRLREKSSS+KDKILTFPLKLLTGEE NETV+LT QIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEP+ITIIDH+FSSIDNKTN FINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG
Sbjct:    1 MITFLDFYKRLREKSSSKKDKILTFPLKLLTGEEKNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPSITIIDHNFSSIDNKTNIFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 232          
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A1I9LVD9_9PHAE (50S ribosomal protein L4, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVD9_9PHAE)

HSP 1 Score: 380 bits (977), Expect = 1.280e-130
Identity = 189/232 (81.47%), Postives = 210/232 (90.52%), Query Frame = 1
Query:    1 MITFLDFYKRLREKSSSRKDKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696
            MITFL+FYKRL EKSSSRKDK+LTFP+K LTGE N E   LT ++KEGQETDNYI+YRAY+AQRTNERQGT NTLTRAEV+GGGRKPWRQKGTG+AR+GSNRSPLWKGGGVSFGPKPKTY NK+NRKEWQLA+R LI+LKEP IT+ID+DFSS++NKTN FI LFK C+I FSKNIT I+P IE+NL K TRNIKTVT+MRADTLNLITLL SDHLFISKDSLKIIEE YNG
Sbjct:    1 MITFLNFYKRLTEKSSSRKDKVLTFPIKFLTGENNKEIATLTLKVKEGQETDNYIIYRAYVAQRTNERQGTRNTLTRAEVRGGGRKPWRQKGTGKARSGSNRSPLWKGGGVSFGPKPKTYTNKINRKEWQLAIRALILLKEPIITVIDYDFSSLENKTNIFIQLFKVCNIGFSKNITIILPNIEDNLVKATRNIKTVTLMRADTLNLITLLGSDHLFISKDSLKIIEETYNG 232          
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A7T8G5K9_SCYLO (50S ribosomal protein L4, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5K9_SCYLO)

HSP 1 Score: 374 bits (960), Expect = 1.150e-127
Identity = 189/232 (81.47%), Postives = 207/232 (89.22%), Query Frame = 1
Query:    1 MITFLDFYKRLREKSSSRKDKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696
            MITFLDFYKRL EKS+SRKDK+LTFP+K L G +N ET  LT Q+KE QET+NYI+YRAYIAQR NERQGTV+TLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPK Y NKLNRKEWQLAVR LI+LKEP I +IDHDF+S+D KT  FINLFK C+I+FS+NITFIVP IEE+LFK TRNIKTV +MRADTLNLIT+L SDHL ISKDSLKIIEE YNG
Sbjct:   25 MITFLDFYKRLTEKSNSRKDKVLTFPIKPLVGGDNKETATLTLQVKEKQETENYIIYRAYIAQRINERQGTVSTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKLYTNKLNRKEWQLAVRSLIMLKEPIINVIDHDFNSMDIKTKAFINLFKTCNINFSQNITFIVPRIEESLFKATRNIKTVKLMRADTLNLITILRSDHLLISKDSLKIIEETYNG 256          
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A6B7EYM7_9PHAE (50S ribosomal protein L4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYM7_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 2.720e-123
Identity = 190/235 (80.85%), Postives = 209/235 (88.94%), Query Frame = 1
Query:    1 MITFLDFYKRLREKSSS--RKDKILTFPLKLLTGEENN-ETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696
            MITFLDFYKRL +KS+   +KDKILTFP K+LTG + + ETV LT +IKEGQET+NYI+YRAYIAQRTNERQGTVNTLTRAEVKGGGRKPW+QKGTGRARAGSNRSPLWKGGGVSFGPKPK Y NK+NRKEWQLAVR LIILKEP IT+IDHDFSSI  KTN FINLF+ C+++FS+ IT IVP I E+LFK TRNIKT  IMRADTLNLITLLESD+LFISKDSLKIIEE YNG
Sbjct:    1 MITFLDFYKRLTKKSNPNVKKDKILTFPTKVLTGSDTSKETVTLTLKIKEGQETNNYIIYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWKQKGTGRARAGSNRSPLWKGGGVSFGPKPKIYTNKINRKEWQLAVRSLIILKEPIITVIDHDFSSI-TKTNDFINLFQTCNVNFSQKITLIVPTIAESLFKATRNIKTTNIMRADTLNLITLLESDYLFISKDSLKIIEETYNG 234          
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A0R6LUU1_UNDPI (50S ribosomal protein L4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUU1_UNDPI)

HSP 1 Score: 258 bits (658), Expect = 1.850e-82
Identity = 130/212 (61.32%), Postives = 168/212 (79.25%), Query Frame = 1
Query:   61 KILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696
            KILTFP+K+LTGEE+ + + LT ++KE   T NY++ RAY+AQR+NERQGT NTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPK Y +K+NRKEWQL++R L+I K+ +ITI+D+ F+ ++ KT+  I +    +I+  +N   +VP I+E L K TRNIKT+ ++ A+ LNL  +L + +L I+KDSLK IEE YNG
Sbjct:    5 KILTFPVKILTGEESGDEITLTLKLKEATNTINYVIQRAYLAQRSNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKFYSSKINRKEWQLSLRSLLIAKQKDITIVDN-FNFLEYKTSNIIKVLNTFNINLFENTLIVVPKIDEKLLKSTRNIKTIKLIVANNLNLKQILLAKNLLITKDSLKTIEETYNG 215          
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A8F0FA21_9PHAE (Ribosomal protein L4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FA21_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.720e-80
Identity = 124/212 (58.49%), Postives = 166/212 (78.30%), Query Frame = 1
Query:   61 KILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696
            K++TFP+K +TG+E+ + + L  ++K+   T+NY++ RAY+ QR NERQGT NTLTRAEVKGGGRKPW+QKGTGRARAGSN SPLWKGGGVSFGPKPK Y NK+NRKEWQL++R L++ KE +IT++++ F+ +D KTN  I + +  +I+  +N   IVP IEE L K T+NIKT+ ++ A+ LNL  +L + +LFI+KDSLK IEE YNG
Sbjct:    5 KLITFPIKSITGKESGDKITLNLKLKDVVTTNNYVIQRAYLTQRLNERQGTANTLTRAEVKGGGRKPWKQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLVAKEKDITVLEN-FNLLDYKTNDIIKILQSFNINLFENTLIIVPKIEEKLIKSTKNIKTIKVLVANNLNLKQILLAQNLFITKDSLKTIEETYNG 215          
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A8F0F722_AKKLU (Ribosomal protein L4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F722_AKKLU)

HSP 1 Score: 251 bits (640), Expect = 9.810e-80
Identity = 128/212 (60.38%), Postives = 161/212 (75.94%), Query Frame = 1
Query:   61 KILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696
            KILTFP+KLLTG+E+ + + LT + KE  +  NY++ RAY+ QR NERQGT NTLTRAEVKGGGRKPWRQKGTGRARAGSN SPLWKGGGVSFGPKPK Y NK+NRKEWQL++R L+I K+ +IT+ID+  + ++ KT+  I      DI+   N   IVP IE+ L K TRNIKT+ ++ A+ LNL  +L + +L ++KDSLK IEE YNG
Sbjct:    5 KILTFPIKLLTGKESGDKITLTLKSKEITDKSNYVIQRAYLTQRYNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLIAKQKDITVIDN-INPLEYKTDNIIKTLNSFDINLFDNTLLIVPKIEDKLLKSTRNIKTIKVIVANNLNLKQILLAKNLLVTKDSLKTIEETYNG 215          
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A8F0FAT9_9PHAE (Ribosomal protein L4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT9_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 7.920e-79
Identity = 129/213 (60.56%), Postives = 161/213 (75.59%), Query Frame = 1
Query:   58 DKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696
            +KILTFP+KLLTGEE+ + + LT + KE   T NYI++RAY+ Q  NERQG  NTLTR+EV+GGGRKPW+QKGTGRARAGS  SPLWKGGGVSFGPKPK Y NK+NRKEWQL +R L+I K+ +ITII++ FSS + KTN  I   K  +I   +    IVP I+E L K TRNIKT+ ++ A+ LN+  +L + +LFI+KDSLK IEE YNG
Sbjct:    4 EKILTFPIKLLTGEESGDNITLTLKSKELSNTSNYIIHRAYLTQLYNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKPKLYSNKINRKEWQLGLRNLLIAKQKDITIINN-FSSTNYKTNDIIKALKVFNIKIFEKTLIIVPKIDEKLLKSTRNIKTIKLIVANNLNIKQILLAKNLFITKDSLKTIEETYNG 215          
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: D1GJT1_FUCVE (50S ribosomal protein L4, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT1_FUCVE)

HSP 1 Score: 244 bits (622), Expect = 5.170e-77
Identity = 123/213 (57.75%), Postives = 162/213 (76.06%), Query Frame = 1
Query:   58 DKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 696
            +K LTFP+KLLTG E+ + + LT ++K+  ET+NY+++RAY+ QR NERQGT +TLTRAEV+GGGRKP RQKG GRARAGSNRSPLWKGGGVSFGPKPK Y NK+NRKEW+L +R L+I K+ NI I+D+  +  + KT   I + K  +I+ S+   FI+P IE+NL + T NIKT+ +  A  LNL  +L + +L ++KDSLKIIE+ YNG
Sbjct:    4 EKTLTFPIKLLTGNESKDKITLTLKVKDANETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPLRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIVDN-LNITEYKTKNIIKILKIFNINLSEKTLFILPKIEKNLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 215          
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Match: A0A8F0JXJ6_9PHAE (Ribosomal protein L4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXJ6_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 2.490e-73
Identity = 120/216 (55.56%), Postives = 159/216 (73.61%), Query Frame = 1
Query:   58 DKILTFPLKLLTGEENNETVNLTFQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG*NK 705
            +KILTFP+K LTG E+ + + +  ++ E   T NYI+ RAY+ QR NERQGT NTLTRAEV+GGGRKPWRQKGTG+ARAGSN SPLW+ GGVSFGPKPK Y NK+NRKEWQL +R L+I K+ NI +++ DF+ ++ +T T     +  DI   +N  FIV  +E++L K T NIK + ++ A+ LN+  +L + +LFI++ SLKIIEE YNG NK
Sbjct:    4 EKILTFPIKDLTGAESGKKIKVILKLTEQNNTSNYIIQRAYLTQRYNERQGTANTLTRAEVRGGGRKPWRQKGTGKARAGSNTSPLWRNGGVSFGPKPKEYSNKINRKEWQLGLRNLLIKKQNNIVVLN-DFNFVNFRTKTIKQSLETFDIKLFENTLFIVSKLEKDLLKATCNIKNIKVLLANNLNIKQILFAKNLFITETSLKIIEETYNGPNK 218          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10923.642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J751_ECTSI1.910e-15396.9850S ribosomal protein L4, chloroplastic n=2 Tax=Ec... [more]
A0A1I9LVD9_9PHAE1.280e-13081.4750S ribosomal protein L4, chloroplastic n=1 Tax=Pl... [more]
A0A7T8G5K9_SCYLO1.150e-12781.4750S ribosomal protein L4, chloroplastic n=5 Tax=Sc... [more]
A0A6B7EYM7_9PHAE2.720e-12380.8550S ribosomal protein L4 n=1 Tax=Cladosiphon okamu... [more]
A0A0R6LUU1_UNDPI1.850e-8261.3250S ribosomal protein L4, chloroplastic n=28 Tax=L... [more]
A0A8F0FA21_9PHAE1.720e-8058.49Ribosomal protein L4 n=1 Tax=Chorda asiatica TaxID... [more]
A0A8F0F722_AKKLU9.810e-8060.38Ribosomal protein L4 n=1 Tax=Akkesiphycus lubricus... [more]
A0A8F0FAT9_9PHAE7.920e-7960.56Ribosomal protein L4 n=1 Tax=Desmarestia aculeata ... [more]
D1GJT1_FUCVE5.170e-7757.7550S ribosomal protein L4, chloroplastic n=3 Tax=Fu... [more]
A0A8F0JXJ6_9PHAE2.490e-7355.56Ribosomal protein L4 n=1 Tax=Protohalopteris sp. T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10923contigE-siliculosus-1a_F_contig10923:216..1206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size699
Model size991
Exons1
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG0088@1,KOG1624@2759
EggNOG free text desc.structural constituent of ribosome
GOsGO:0000311,GO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009547,GO:0009570,GO:0009579,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022626,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0034641,GO:0034645,GO:0042651,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055035,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
KEGG ModuleM00178
KEGG Pathwayko03010,map03010
KEGG koko:K02926
Preferred namerpl4
Seed eggNOG ortholog2880.D1J751
Seed ortholog evalue1.5e-121
Seed ortholog score442.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.6778567-UTR-E-siliculosus-1a_F_contig10923:215..5071622927594.6778567-UTR-E-siliculosus-1a_F_contig10923:215..507Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10923 216..507 -
1696318603.0304687-UTR-E-siliculosus-1a_F_contig10923:215..5071696318603.0304687-UTR-E-siliculosus-1a_F_contig10923:215..507Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10923 216..507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.69-CDS-E-siliculosus-1a_F_contig10923:507..12061622927594.69-CDS-E-siliculosus-1a_F_contig10923:507..1206Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10923 508..1206 -
1696318603.050324-CDS-E-siliculosus-1a_F_contig10923:507..12061696318603.050324-CDS-E-siliculosus-1a_F_contig10923:507..1206Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10923 508..1206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10923.642.1prot_E-siliculosus-1a_F_contig10923.642.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10923 508..1206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10923.642.1

>prot_E-siliculosus-1a_F_contig10923.642.1 ID=prot_E-siliculosus-1a_F_contig10923.642.1|Name=mRNA_E-siliculosus-1a_F_contig10923.642.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=233bp
MITFLDFYKRLREKSSSRKDKILTFPLKLLTGEENNETVNLTFQIKEGQE
TDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGS
NRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHD
FSSIDNKTNTFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIM
RADTLNLITLLESDHLFISKDSLKIIEEIYNG*
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mRNA from alignment at E-siliculosus-1a_F_contig10923:216..1206-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10923.642.1 ID=mRNA_E-siliculosus-1a_F_contig10923.642.1|Name=mRNA_E-siliculosus-1a_F_contig10923.642.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=991bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10923:216..1206- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATAACATTTTTGGACTTTTATAAACGCTTAAGAGAAAAATCTAGTTC TAGAAAAGATAAAATTTTAACCTTTCCTCTTAAACTTTTAACAGGAGAAG AAAATAACGAAACAGTAAACTTAACTTTCCAAATAAAAGAAGGACAAGAG ACAGATAACTATATTCTTTATCGCGCCTATATTGCACAAAGAACAAATGA AAGACAAGGAACAGTAAATACTTTAACAAGAGCAGAAGTTAAAGGTGGAG GCCGTAAGCCTTGGAGACAAAAGGGAACTGGGCGAGCGCGGGCTGGATCA AATCGTTCACCTCTTTGGAAAGGTGGGGGTGTTTCTTTTGGACCAAAACC TAAAACATATATTAATAAACTAAATCGTAAAGAATGGCAACTAGCTGTAC GAGGTTTAATTATATTAAAAGAGCCAAATATTACTATAATAGATCATGAT TTTAGTTCTATAGATAATAAAACGAATACCTTTATTAATTTATTTAAAGG GTGTGATATAAGTTTTTCTAAAAATATAACATTTATTGTTCCAGCTATAG AGGAAAATTTATTTAAAGTAACAAGGAATATAAAAACTGTTACTATAATG CGTGCCGATACTTTAAATTTGATAACATTATTGGAATCAGATCATTTATT TATTAGTAAAGATAGTTTAAAAATAATTGAGGAAATTTATAATGGTTAGA ATAAATTTTAGTTCAAGTATTGATTTGATCAAATATCCTCTTATAACTTC TAAAACAAATTTATTATTTGAGAATAACCAATACACATTCTTAGTCGACC CTAGACTAAATAAGTTAAGTATAAAAAAAGCAATTGAATTTTTATTTGAT GTTAAAATAATTAAAATTAATAGTTGTAATTTACCTAAAAAAAAGCGTCG GGTAGGACAATTTACTGGCATTAAGCCACGTTATAAAAAAGTAATAGTTA AATTAGCAAAGGATAATAAAATTGATCTCTTTTCTAATGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10923:216..1206-

>mRNA_E-siliculosus-1a_F_contig10923.642.1 ID=mRNA_E-siliculosus-1a_F_contig10923.642.1|Name=mRNA_E-siliculosus-1a_F_contig10923.642.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10923:216..1206- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATAACATTTTTGGACTTTTATAAACGCTTAAGAGAAAAATCTAGTTC
TAGAAAAGATAAAATTTTAACCTTTCCTCTTAAACTTTTAACAGGAGAAG
AAAATAACGAAACAGTAAACTTAACTTTCCAAATAAAAGAAGGACAAGAG
ACAGATAACTATATTCTTTATCGCGCCTATATTGCACAAAGAACAAATGA
AAGACAAGGAACAGTAAATACTTTAACAAGAGCAGAAGTTAAAGGTGGAG
GCCGTAAGCCTTGGAGACAAAAGGGAACTGGGCGAGCGCGGGCTGGATCA
AATCGTTCACCTCTTTGGAAAGGTGGGGGTGTTTCTTTTGGACCAAAACC
TAAAACATATATTAATAAACTAAATCGTAAAGAATGGCAACTAGCTGTAC
GAGGTTTAATTATATTAAAAGAGCCAAATATTACTATAATAGATCATGAT
TTTAGTTCTATAGATAATAAAACGAATACCTTTATTAATTTATTTAAAGG
GTGTGATATAAGTTTTTCTAAAAATATAACATTTATTGTTCCAGCTATAG
AGGAAAATTTATTTAAAGTAACAAGGAATATAAAAACTGTTACTATAATG
CGTGCCGATACTTTAAATTTGATAACATTATTGGAATCAGATCATTTATT
TATTAGTAAAGATAGTTTAAAAATAATTGAGGAAATTTATAATGGTTAGA
TGATAACATTTTTGGACTTTTATAAACGCTTAAGAGAAAAATCTAGTTCT
AGAAAAGATAAAATTTTAACCTTTCCTCTTAAACTTTTAACAGGAGAAGA
AAATAACGAAACAGTAAACTTAACTTTCCAAATAAAAGAAGGACAAGAGA
CAGATAACTATATTCTTTATCGCGCCTATATTGCACAAAGAACAAATGAA
AGACAAGGAACAGTAAATACTTTAACAAGAGCAGAAGTTAAAGGTGGAGG
CCGTAAGCCTTGGAGACAAAAGGGAACTGGGCGAGCGCGGGCTGGATCAA
ATCGTTCACCTCTTTGGAAAGGTGGGGGTGTTTCTTTTGGACCAAAACCT
AAAACATATATTAATAAACTAAATCGTAAAGAATGGCAACTAGCTGTACG
AGGTTTAATTATATTAAAAGAGCCAAATATTACTATAATAGATCATGATT
TTAGTTCTATAGATAATAAAACGAATACCTTTATTAATTTATTTAAAGGG
TGTGATATAAGTTTTTCTAAAAATATAACATTTATTGTTCCAGCTATAGA
GGAAAATTTATTTAAAGTAACAAGGAATATAAAAACTGTTACTATAATGC
GTGCCGATACTTTAAATTTGATAACATTATTGGAATCAGATCATTTATTT
ATTAGTAAAGATAGTTTAAAAATAATTGAGGAAATTTATAATGGTTAG
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