mRNA_E-siliculosus-1a_F_contig1092.638.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1092.638.1
Unique NamemRNA_E-siliculosus-1a_F_contig1092.638.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: W7TFL2_9STRA (DUF1990 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFL2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.840e-25
Identity = 78/222 (35.14%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:  406 LPSLRLIFKHSETALTGFLSEIATRSFNHDHVGITAVQPPL----CAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFRE-QDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVAE 1056
            LP LR+ + HS   +  +L  +  R FNH +VG+T    P           L   +GF+V  +R LLG G + Y       L +  IVN   W   EV        + G+ +++ ++ YG+LW+ NP R V  H   E P     G  +++  ST+ GHL+EGEERF V F   +   VW D+ S S+G+  LG++ MPV+RP+Q  F     R M +LV E
Sbjct:  167 LPRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETY------ALAKDKIVN-WSWGE-EVKWVRFSEGEHGINVVSQIRTYGLLWTMNPLRKVLCH---EKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLVGE 377
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A0G4GX11_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GX11_VITBC)

HSP 1 Score: 104 bits (260), Expect = 1.320e-21
Identity = 82/276 (29.71%), Postives = 130/276 (47.10%), Query Frame = 1 
Query:  334 LALGSLCF-VAAHVADAKFHGR-TAWLPSLRLIFKHSETALTGFLSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGR-FSSLGFSTVVGHLIEGEERFSVEFRE--------------------------------QDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVAE 1056
            +AL +LC  V+ H + A    R +A +P L++  +HS+ A+   L  I  R  NH  V  T ++ P     ++ + P  + VN +R L+G G K Y  A R  L  + I   L+W  ++         + G  + T  K YG+  + NPC   Y   D+   R  G+   ++++G+STV GHL+ GEERF+V + +                                +   VW ++YS SR SGVLG++A   +RP+Q+ F A    +M   VA+
Sbjct:    4 VALLNLCILVSPHASTAASGVRPSASIPMLKVGQRHSDDAIFDALGTIKGRPPNHPFVRGTLLRYP-----TSSMAPSSYMVNHKRFLIGHGEKAYHFASRALLSWQLINESLEWIRID---------RRGEAVTTCAKAYGVS-AINPCLYQYELIDQRAARPSGREVVYTAVGYSTVKGHLLAGEERFTVAWNQTPRKGGPVSRIFGLRKQRPANDSDSEGDGIESEKDGVWFEVYSYSRPSGVLGRLAAVAVRPLQRRFAADLAAKMPAYVAK 264
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A8J6CD17_DIALT (DUF1990 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CD17_DIALT)

HSP 1 Score: 100 bits (250), Expect = 7.880e-21
Identity = 72/205 (35.12%), Postives = 108/205 (52.68%), Query Frame = 1 
Query:  406 LPSLRLIFKHSETALTGFLSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFA 1020
            LP++R I + S   +  F+       FN      T  Q  +    S+   P   ++  R  ++G G + YDRA R   +   +V  + WA++    Q +        L TVVKCY  +WS NPCR+ +         +LG  R S+L ++T+ GHL+EGEE F V   E+D  V + + S+S+GSGVLGK+A+P I PI++AF A
Sbjct:   12 LPAVR-ITRPSADQIDAFVQRQRDTGFN------TREQGTILHYLSSGQRPHHLQLCERAAVIGRGQEAYDRARRALAKGELLVG-VDWAAVHFLAQPA----VARDLATVVKCYRCVWSLNPCRVTHV--------ALGTTR-STLAYATLDGHLLEGEEAFDVRL-ERDGAVHVRVTSLSKGSGVLGKLAVPFIIPIRRAFLA 194
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A061RK60_9CHLO (Upf0548 protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK60_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 3.380e-16
Identity = 63/202 (31.19%), Postives = 100/202 (49.50%), Query Frame = 1 
Query:  478 RSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAH-WDRE-LPRSLG--------KGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVA 1053
            R FN++HVG T   PPL       +  + + V+  R  LG+G  VY RA       R    +L W S+E      +  K     + VV    ++W+ NP ++VY    +RE L  S G        +    S     + GHL+ GEERFSVE+ + D +VW ++Y+ S+ + +L K   P++R +QK F +   + M++ V+
Sbjct:   24 RGFNYEHVGSTYSAPPL----PDKLRDQNWNVDHTRVKLGSGKMVYRRAKSAVQEWRHF--QLGWTSVEPTTPILKDSK-----VCVVARALLVWTRNPLQIVYVREGNREVLSASAGPDGSPATTRAEVYSFAHGCLGGHLLAGEERFSVEWHKDDDSVWYEIYTFSKPAHLLSKATYPIVRGLQKKFGSDSAKAMMQEVS 214
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: R1E3Q5_EMIHU (DUF1990 domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E3Q5_EMIHU)

HSP 1 Score: 87.8 bits (216), Expect = 5.520e-16
Identity = 72/211 (34.12%), Postives = 103/211 (48.82%), Query Frame = 1 
Query:  436 SETALTGFLSEIATRSFNHD-HVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYG----ILWSANPCRLVYAHWDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVA 1053
            S+ +LT F + IA R+ NHD H+   A  P    P  +L      RV A R  LG G   + RA R  L    +     W+++ V +   R       L+T+         +LW +NPCR V         R +G+ R  S+G+ST+ GHL+EGEE+  V +  +   V  ++ S SRG+G LGK+  P +   Q+ FF  QCR M R  A
Sbjct:   24 SDESLTAFAASIADRAINHDIHL---ARAPASGTPARSL------RVIAMRVPLGHGRACWRRARR-RLLSWEMHEGSTWSAVLVEDPPGR------SLVTLAALPSPRLPLLWVSNPCRAVR--------RRVGRRR-CSVGYSTLSGHLLEGEEKMDVVWSRETDEVAFEVVSHSRGAGPLGKLLFPALSSTQRRFFREQCRCMQRAAA 209
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A7S0RDM0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RDM0_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 1.160e-13
Identity = 60/216 (27.78%), Postives = 103/216 (47.69%), Query Frame = 1 
Query:  424 IFKHSETALTGFLSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGRFSSL--------------GFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQC 1029
            +F+ S+  +   L +     F + H G +   PPL  P ST     G++V+  R  LG GS  Y+RA +       +V + +   +  A+ D+    E    + V      LW+ +P ++VY     +L +  GKG+   +              G   + GH++ GEERF+VE+ E+D +VW D+ + S+ +G L  ++ P++R  Q+ F   QC
Sbjct:    6 LFRPSKETVKQTLQDGQKLGFCYPHQGASKDFPPL--PPST--TNYGYKVDHNRVKLGHGSAAYERAKK-------LVKKWEHFQLGWAQVDADTAIEEGSPVCVTAQVAFLWTRHPLQVVYVE---DLEKGKGKGKQPRIVSPAGKSCNARYTFGHGCLKGHMLAGEERFAVEWLEEDDSVWYDVAAFSKPAGPLSTLSYPLVRLFQRHF--AQC 205
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: D8LQ57_ECTSI (DUF1990 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ57_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.390e-13
Identity = 62/244 (25.41%), Postives = 100/244 (40.98%), Query Frame = 1 
Query:  487 NHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVK-CYGILWSANPCRLVYAH----------------------------------------------------WDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEF---REQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLV 1050
            NH   G + +              +GF+    R  LG+G + Y R     LR + +     WA + + ++  R   +   L+T+ K C G++W  NPC+++Y                                                      W   LP    KGR S++ ++T +GHLI+GEER  V        D +VW ++YSVSRG+G++G +  P ++ +Q+ FF  Q   M R+V
Sbjct:   50 NHAFAGFSDIAAAXXXXXXXXXXXQGFQERTVRAHLGSGKETYARGREALLRWQ-MHEGSSWARIFLGQRPPRPALQ-RNLVTIAKACAGLVWCINPCQVLYERNDVALRFIAPPGADANRSLDDGEARPVENTKRVMGGGGGALWAGKRPTSAPSWASFLPGVKHKGRQSAVAYATKMGHLIQGEERMRVLHFCGPGGDDSVWFEVYSVSRGAGLVGGLVFPFVQSMQRRFFREQAETMKRVV 291
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A7S1X6Y4_9CHLO (Hypothetical protein n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X6Y4_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 2.180e-13
Identity = 60/217 (27.65%), Postives = 104/217 (47.93%), Query Frame = 1 
Query:  460 LSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMG--------------LLTVVKCYGILWSANPCRLVYA-HWDRELPRSLGKGRFSSLGFS----TVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVA 1053
            +S  + + FN+ HVG T   PPL       +V + + V+  R  +G G   Y+   R     +    +L W +++ + +  +  K  +                + VV    + W+ NP  +VYA    R++P S GKG  ++  FS     + GHL+ GEERF++E+R+ D +VW ++Y+ S+ +  L     PV+R +QK F +     M R ++
Sbjct:   18 VSHGSRQGFNYRHVGKTEGAPPL----DDELVRERWTVDHTRVQVGKGRAAYEEGKRALKSWQHF--QLGWTTVDASTRVEKGSKARVSPSVSAEPSRVCSAAQVCVVARAVLPWTRNPLEIVYAKEGSRKVPASDGKGGTNAKVFSFAHGCLGGHLLAGEERFAMEWRKDDDSVWYEIYTFSKPAHALSLATYPVVRLLQKKFASDSTAAMQRTLS 228
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: I0YZW6_COCSC (DUF1990 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZW6_COCSC)

HSP 1 Score: 79.0 bits (193), Expect = 4.270e-13
Identity = 48/166 (28.92%), Postives = 86/166 (51.81%), Query Frame = 1 
Query:  559 KGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRR--WKEGMGLLTVVKCYGILWSANPCRLVYAHWDREL------------PRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAF 1014
            KG++ +  R  +G G + Y +A       +  V+  +W  M +   D+ R   K G  ++ + +  G+LW  NP R++YA  ++ L            P    +G    LG +T+ GH + GEERFSV++ ++D +VW ++Y++SR + +L   + P+ R  Q+ F
Sbjct:   47 KGWQSDYDRVQVGKGKQAYRKA-------KDFVS--EWQHMGLGWVDTNRPAVKVGEHVIVMAQVLGLLWMCNPLRILYAKEEKGLIPAAAMLRARRQPACTSRGLRFDLGQTTLEGHSLAGEERFSVQWSKEDDSVWYEIYAISRPATLLALASYPLTRYYQQRF 203
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Match: A0A7V9UWY9_9BACT (DUF1990 domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7V9UWY9_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 6.870e-13
Identity = 57/212 (26.89%), Postives = 95/212 (44.81%), Query Frame = 1 
Query:  424 IFKHSETALTGFLSEIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVYDRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWSANPCRLVYAHWDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVAEK 1059
            +F+ S+  +  F++      F++  VG +  +           +P G+ +N  R  LG G+  + RA +  L+    + RL+W  +          +    ++ V+  +    S NPCR++Y      L  + G        F T+ GH  EGEERF VE+R  D +VW ++ S +R   +L KI  P +   Q+ F     R ML  V +K
Sbjct:    7 LFEPSDEQIENFVAAQRDLPFSYREVGASQSR-----------IPAGYPINHHRIQLGIGADAFARA-KAALQS-WTMYRLEWTHLYPINPPIAVGE----VVCVIANHRFCRSLNPCRIIYV-----LEEAGGAAERYGFAFGTLPGHSEEGEERFIVEWRRDDDSVWYEILSFARPHHILAKIGFPFVGLFQQKFGIDSKRAMLGAVKDK 196
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1092.638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TFL2_9STRA2.840e-2535.14DUF1990 domain-containing protein n=3 Tax=Monodops... [more]
A0A0G4GX11_VITBC1.320e-2129.71Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A8J6CD17_DIALT7.880e-2135.12DUF1990 domain-containing protein n=1 Tax=Diacrone... [more]
A0A061RK60_9CHLO3.380e-1631.19Upf0548 protein n=1 Tax=Tetraselmis sp. GSL018 Tax... [more]
R1E3Q5_EMIHU5.520e-1634.12DUF1990 domain-containing protein n=2 Tax=Emiliani... [more]
A0A7S0RDM0_9CHLO1.160e-1327.78Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
D8LQ57_ECTSI1.390e-1325.41DUF1990 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1X6Y4_9CHLO2.180e-1327.65Hypothetical protein n=2 Tax=Tetraselmis chuii Tax... [more]
I0YZW6_COCSC4.270e-1328.92DUF1990 domain-containing protein n=1 Tax=Coccomyx... [more]
A0A7V9UWY9_9BACT6.870e-1326.89DUF1990 domain-containing protein n=1 Tax=Pyrinomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1092contigE-siliculosus-1a_F_contig1092:15641..20259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size750
Model size1526
Exons6
Ec32 orthologEc-12_008030.1
Ec32 ortholog descriptionDomain of unknown function DUF1990
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2E8GY@1,2SEZ2@2759
EggNOG free text desc.Domain of unknown function (DUF1990)
Seed eggNOG ortholog2903.EOD17666
Seed ortholog evalue4.5e-15
Seed ortholog score88.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1092.638.1prot_E-siliculosus-1a_F_contig1092.638.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1092 16102..19944 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.0980005-UTR-E-siliculosus-1a_F_contig1092:15640..161011622927594.0980005-UTR-E-siliculosus-1a_F_contig1092:15640..16101Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1092 15641..16101 -
1696318602.6632655-UTR-E-siliculosus-1a_F_contig1092:15640..161011696318602.6632655-UTR-E-siliculosus-1a_F_contig1092:15640..16101Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1092 15641..16101 -
1622927594.2175796-UTR-E-siliculosus-1a_F_contig1092:19944..202591622927594.2175796-UTR-E-siliculosus-1a_F_contig1092:19944..20259Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1092 19945..20259 -
1696318602.7551122-UTR-E-siliculosus-1a_F_contig1092:19944..202591696318602.7551122-UTR-E-siliculosus-1a_F_contig1092:19944..20259Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1092 19945..20259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.1103206-CDS-E-siliculosus-1a_F_contig1092:16101..161911622927594.1103206-CDS-E-siliculosus-1a_F_contig1092:16101..16191Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 16102..16191 -
1696318602.682156-CDS-E-siliculosus-1a_F_contig1092:16101..161911696318602.682156-CDS-E-siliculosus-1a_F_contig1092:16101..16191Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 16102..16191 -
1622927594.1394625-CDS-E-siliculosus-1a_F_contig1092:16753..169061622927594.1394625-CDS-E-siliculosus-1a_F_contig1092:16753..16906Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 16754..16906 -
1696318602.6923518-CDS-E-siliculosus-1a_F_contig1092:16753..169061696318602.6923518-CDS-E-siliculosus-1a_F_contig1092:16753..16906Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 16754..16906 -
1622927594.1512287-CDS-E-siliculosus-1a_F_contig1092:17301..174261622927594.1512287-CDS-E-siliculosus-1a_F_contig1092:17301..17426Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 17302..17426 -
1696318602.7018926-CDS-E-siliculosus-1a_F_contig1092:17301..174261696318602.7018926-CDS-E-siliculosus-1a_F_contig1092:17301..17426Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 17302..17426 -
1622927594.1659827-CDS-E-siliculosus-1a_F_contig1092:18569..186571622927594.1659827-CDS-E-siliculosus-1a_F_contig1092:18569..18657Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 18570..18657 -
1696318602.7120628-CDS-E-siliculosus-1a_F_contig1092:18569..186571696318602.7120628-CDS-E-siliculosus-1a_F_contig1092:18569..18657Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 18570..18657 -
1622927594.187873-CDS-E-siliculosus-1a_F_contig1092:18970..191251622927594.187873-CDS-E-siliculosus-1a_F_contig1092:18970..19125Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 18971..19125 -
1696318602.7232852-CDS-E-siliculosus-1a_F_contig1092:18970..191251696318602.7232852-CDS-E-siliculosus-1a_F_contig1092:18970..19125Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 18971..19125 -
1622927594.2023585-CDS-E-siliculosus-1a_F_contig1092:19805..199441622927594.2023585-CDS-E-siliculosus-1a_F_contig1092:19805..19944Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 19806..19944 -
1696318602.7381554-CDS-E-siliculosus-1a_F_contig1092:19805..199441696318602.7381554-CDS-E-siliculosus-1a_F_contig1092:19805..19944Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 19806..19944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1092.638.1

>prot_E-siliculosus-1a_F_contig1092.638.1 ID=prot_E-siliculosus-1a_F_contig1092.638.1|Name=mRNA_E-siliculosus-1a_F_contig1092.638.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=250bp
MWTPTWLALGSLCFVAAHVADAKFHGRTAWLPSLRLIFKHSETALTGFLS
EIATRSFNHDHVGITAVQPPLCAPCSTLVVPKGFRVNARRQLLGTGSKVY
DRAVRVGLRERGIVNRLQWASMEVAEQDSRRWKEGMGLLTVVKCYGILWS
ANPCRLVYAHWDRELPRSLGKGRFSSLGFSTVVGHLIEGEERFSVEFREQ
DSTVWLDLYSVSRGSGVLGKIAMPVIRPIQKAFFAGQCREMLRLVAEKD*
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mRNA from alignment at E-siliculosus-1a_F_contig1092:15641..20259-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1092.638.1 ID=mRNA_E-siliculosus-1a_F_contig1092.638.1|Name=mRNA_E-siliculosus-1a_F_contig1092.638.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4619bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:15641..20259- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGAGCGCTGGACAGGGTTAAGGCTAAGAACCAACGCCCAACCACAAAAG
TTTCTGGAAGAGGCTGGAGGCGAGAGGCACAACAGCAGAGCACAGAGTAG
ATGAGAAGGGTACGTGGCTAGGTGCGACCGGGAACACGGCGGGACTGTCA
ACTTCGTCCACGACCACCTCGTGGAACTCCTCTCCGCCTTTTCCCAAGCC
TCTCTCTCTTCTTGCTGTCCCAACTCCCCTCGTCCCTCGTCCCTCCTGCT
ACTCCCTAGCTGGCTGTCCCTCCCTCTCTCTCCGTCGTCCTCTCCCCTTC
TCTGTCCCTCCTTCCATGTGGACACCGACGTGGCTTGCTCTGGGCTCCCT
TTGCTTCGTGGCAGCTCATGTTGCAGATGCCAAGTTTCATGGCCGAACGG
CATGGTTGCCGAGTCTACGCTTGATCTTCAAACACTCCGAAACGGCTTTG
ACTGGTGGGTGAATAAGAGAGATGGCGTTCTGTGTGACCGACCAGCGCCT
CGCTTCACCACGTGTGTAGCGTCTGATTGGATTAGCTTCAGGCAACACCG
TGATTTTTGCTCGCGACACTCAGTCTTCGGATCGTTCTTCATAGCATAGC
ACAGCTCTCGGCCTCCTTCACAAATACAGAAGAACGAGCAACACATGACG
AACATGACAACAGCTGCAAGCATGCTAAACAGCAGTAGTAGGCATACCGT
GGAGTAGACTATCATCTGCCTTTGTCAGGCAAGGACAACCAGGTTCCATG
GAAATGGCGTGCACACAGGCGAAGAGTTGCTCCGAAGTTTGTAAAACTCA
CAAGGCCTGATCCTGATGAGTGAGTGCGTTCGTTCAACATGCACGCTCCT
TTCTCCGATGTTGATTCAATCTTGCTCTGACCGTCATTTTACGTAGATGA
GGAAGCCGATGATCCGCACAACACACTTCTCTCCATCAACAGCAGTTTCG
CCCTTGTTTTTAGCCTGCTTCTTGATTCCGTAGACAAGACTACCGTAGAA
GTTGTTGTTCAGCCGTTTTAGATAGGGCACTGAGAAAGACGGAAAAGTTT
ATTCTCGCGGAGTCAATCGATAATCTGTCTTCTCCGATGTTGTTGCTCCC
GGGTCTTTTGACCCGGCCTGCCCCGCGACCGCAGGGTTTCTATCTGAGAT
CGCCACCCGGTCCTTCAACCACGACCACGTGGGCATCACCGCAGTTCAAC
CGCCGCTGTGCGCCCCGTGCTCCACGCTAGTTGTTCCCAAAGGCTTCAGA
GTCAACGCTCGACGGCAGCTCTTGGGCACTGGGTCAAAGGCGAGAAATTA
GTCCGCACATGTATGCCGGACAAGACGTTCTGTCCGACGTAATTACATTT
CTTTTTCGCAAGCAGCAGCTTTCCTCTGCCTATTTCATTATTCAATACAA
TGGCAGAGAACACGACGAAATGTTTTTGGCCGTGAGAGATGCAACTTGTG
GTCCGGCTACACATATCCAAGTCGTGTCGTTTTTTAGACTGGGTATGCAT
AGGGGAAACCCACAGGGGAAGGCGGCGCAAAGACCCCCCCCCCCCTCCTA
AAACTCATTTTTGTTCGCATATCGTCCTATCTGCCCGCTCCGATATGTGA
AGGTTTACGATAGAGCCGTGCGAGTGGGGCTAAGAGAACGGGGGATAGTC
AACCGTCTTCAATGGGCCAGCATGGAGGTTGCCGAGCAAGGTAATATAAC
GTCGGCGCTCGCAGGGCAAGAAAGTAACGTGAACAAGGGATCGAGGCCGC
GACTTTCATTGTTTTTCTCGTTATCTATTCCTGTTGTGTGGGTGGGGGGG
CACTGTTGCCCTGTGCTTCCGCACCCCTCGTGTGGTGTTTACTACCGAGC
CCGGCATGCTTGCAGCAGGCGGGGCGACGAGAGGATCACCAGCAGAAACC
CGAGCCAAGAGTAACAATGTGTAGGGCCAAGAGAGTGTAGGGCCAACGCT
TCCTGAGGGGAGCTGAAACGGGGGAGTTACTCATGTGTTGTTTGGTTTTC
GTAGACTCTCTGCAAGGTTCGCCAAACAGTAGCCAGACTCTGCTGCATCG
AAAGTCGGGCTGATGATACACGGCGGTAGCGGTAGTCAAGTGTGTGGAGG
ATGGCTTAGAAGTCATTGCGATGCCAATAGCGTGCGGCCGTTCATGTGGA
CAAAGTTCGGCAATTGAAACTATTTAGTGCGTATCTCACCCTTTTGTTGC
TCCCCAGTCCCTTGGTGTGGTTGGGTGCTGCTACGTTTTTACAGTAACAT
GTTTGCATGTCTAGTCCAGGCTTGGAACTTAATCCATGTTCCACCGTTGA
CGTCTGCACTACCTTCGCCGCGAAATAATTTTCTCCAACTTTACGGGACG
TGGAAGTCGACATATTGACCCTTTGCATCAAGATATTTGTAGCAACAGGC
CGACACCAGCAATATCAATAACGTAAGAGTCGGAGAGATGGCACCCGCGT
GTTAGCATTTTTTTGCAGCGTAGTCCTCCACAACTAGGAGGGTGCGAACA
CCAACCGATACCTCGCAGGAATGCCCTCGACGAGATGTTTCCAACACTAC
CCTTTTCGGCAGTGGTACCCCGCTGGTTGTGGAGAAATACGCTGTACAAA
AATGCTTACACGGGGGTGCCATCTCTCCGACTCTTACGGTGATTGCCAGT
GCTCACACCCGTTCTTAGTGCAAACGGGGCATGACATCCACACACGGACG
AGCGCGCGTATGGGACGTGGCATAGGGAACGATGTACTCCTTCGGACAGA
ACCCCCCCCTTCCTCCTCACCCACACGTCTTTTTCGCGTCTGTCGCGCAC
CTACGCACGTCCATGGACTGGGTGCACCTCCAGACTCGAGGCGATGGAAG
GAGGGAATGGGTCTGCTGACTGTGGTGAAGTGCTACGGCATACTTTGGTC
TGCCAACCCTTGCCGGCTCGTGTACGCCCATTGGGACAGGGAACTCCCTC
GTTCGCTGGTGAGGGGCGATATTTCATCATCACGAACGTTTCCTTGCAGC
GGGGAAGGTGTCAGTCAGGGGCTCCGTCAAAGTGATGCAGGGCAGACTAC
GAGTTGATTTGGATTATCCAGCATGTGATTGGGCACCGGCCTGTTTGCAT
CTAAGCGCTGAGCCTATGAACCAAGTACCGACGTCGAAATGCCAGCCGAT
CACGTCGTAGTTTTGTTTGTTCACGCGTGCTTAAACGCTGGGTTGATGCT
CGTCTTGAAAACTTACCCGTCTTTTCATGTCTTGTTTTTGACAGAAGCGC
ACTCATTTTACAAAACAGCGGAGCGCAAGGGTTAATTTTCCGTCCTTCTC
TGTGAGGATCAGAACACGGCGTGACGTATTGCCGTCCGCTTTTCCCGACG
CAGGGGAAAGGGAGATTCTCCAGCCTAGGTTTTTCTACCGTCGTAGGCCA
CCTCATTGAGGGAGAAGAGCGCTTCAGCGTTGAGTTCCGAGAGCAGGACT
CAACGGTATGGCTGGATCTGTACTCGGTCTCAAGGGGCTCAGGCGTGTTG
GGGAAGGTGCGTTCATCCCGGGTACCCTCTGGATACGTATACAGGAGGAC
AATGGCCCGTGTACGTTCCCATGTTTTTTTGCGTCTTTTCCGGTGGGACG
ACAGATTTTCGTTCTTATCGCCGACAATGTTGGGTGCCAAAGAAGCAGCG
GTGGAGCGACCGGGAGCTTCGCGGAAAGCGCAGCGGTGCGGTTAAACCAC
ACCCGGAAGTTACCCGTGGAGTGAGTCCCGCACCTACACGCTTTTGGACG
CACCCAAGGGAGGCGATCTGGAACAAGTCAGATTGAAAACAATAGTGAAC
GCGACATGGGTGGCACGCGTAGCCTGATTAATATCTGTCGGCTAGCTGGC
TCGTAGCGCAGCGGGACGGCGGTGAGGATTTTTCTCGAGAGGTGGATCCT
GGTACTTGTCTTGTCGTCTCTCGCTGACACGCGTTCAACCCCTAGCGCTC
TCTTTTCTTTGCCAGCCAGTGCTTTTCTTTGCCAGCCAGTGCTGGCTGCT
GCCCCCGTCCTGATGTTTAGTGCCCTCCTACGCGTGTTCTTTGGCCGCCT
TACCCGCTCCAAGCACAGATAGCCATGCCCGTCATCCGGCCGATACAGAA
GGCGTTCTTTGCCGGACAGTGCCGCGAAATGCTCAGACTTGTGGCGGAGA
AAGACTAGACGGCGGGAAGAGGAGTACAAGGATGTGGCCGGCGCAGATCC
TCTTGAACGTTCTCCGACAACAACGAATTAGGAAACGCGTTCTGGAAGCA
CGCGCTTGGTGGAAAGATTTTGTTCGGCATGAGGGGAATGGTTTGCGTTG
AAGACGGCTTGAGCACACTTCGGATTTTTGGGAGAAACGGGTCGCGTGTG
TTGGCTTGTCGACCTCCCCTAGGGGTAATGTCGAATGTATTGCGTGCTCA
AGAAGGCCGTAACTTGTTCTGTTGAGACGGAACGGGCCTCGTGTGTACGA
TATGGTGTATTTTTTTCTTGTGTTTTTCTTGCAATACTCCTGGCCCGGAG
TCAATCAACCACTTCCTTTGCGGCATTTTCCGTGGTCGCCGTCGGGCATC
CTTGTCACCAAAAGAATTCAACTTACAATGATTTAATCTACATAGTCAGG
TGATATGTTCAGTTCTTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1092:15641..20259-

>mRNA_E-siliculosus-1a_F_contig1092.638.1 ID=mRNA_E-siliculosus-1a_F_contig1092.638.1|Name=mRNA_E-siliculosus-1a_F_contig1092.638.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:15641..20259- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGACACCGACGTGGCTTGCTCTGGGCTCCCTTTGCTTCGTGGCAGC
TCATGTTGCAGATGCCAAGTTTCATGGCCGAACGGCATGGTTGCCGAGTC
TACGCTTGATCTTCAAACACTCCGAAACGGCTTTGACTGATGTGGACACC
GACGTGGCTTGCTCTGGGCTCCCTTTGCTTCGTGGCAGCTCATGTTGCAG
ATGCCAAGTTTCATGGCCGAACGGCATGGTTGCCGAGTCTACGCTTGATC
TTCAAACACTCCGAAACGGCTTTGACTGGGTTTCTATCTGAGATCGCCAC
CCGGTCCTTCAACCACGACCACGTGGGCATCACCGCAGTTCAACCGCCGC
TGTGCGCCCCGTGCTCCACGCTAGTTGTTCCCAAAGGCTTCAGAGTCAAC
GCTCGACGGCAGCTCTTGGGCACTGGGTCAAAGGGTTTCTATCTGAGATC
GCCACCCGGTCCTTCAACCACGACCACGTGGGCATCACCGCAGTTCAACC
GCCGCTGTGCGCCCCGTGCTCCACGCTAGTTGTTCCCAAAGGCTTCAGAG
TCAACGCTCGACGGCAGCTCTTGGGCACTGGGTCAAAGGTTTACGATAGA
GCCGTGCGAGTGGGGCTAAGAGAACGGGGGATAGTCAACCGTCTTCAATG
GGCCAGCATGGAGGTTGCCGAGCAAGGTTTACGATAGAGCCGTGCGAGTG
GGGCTAAGAGAACGGGGGATAGTCAACCGTCTTCAATGGGCCAGCATGGA
GGTTGCCGAGCAAGACTCGAGGCGATGGAAGGAGGGAATGGGTCTGCTGA
CTGTGGTGAAGTGCTACGGCATACTTTGGTCTGCCAACCCTTGCCGGCTC
GTGTACGCCCATTGGGACAGGGAACTCCCTCGTTCGCTGACTCGAGGCGA
TGGAAGGAGGGAATGGGTCTGCTGACTGTGGTGAAGTGCTACGGCATACT
TTGGTCTGCCAACCCTTGCCGGCTCGTGTACGCCCATTGGGACAGGGAAC
TCCCTCGTTCGCTGGGGAAAGGGAGATTCTCCAGCCTAGGTTTTTCTACC
GTCGTAGGCCACCTCATTGAGGGAGAAGAGCGCTTCAGCGTTGAGTTCCG
AGAGCAGGACTCAACGGTATGGCTGGATCTGTACTCGGTCTCAAGGGGCT
CAGGCGTGTTGGGGAAGGGGAAAGGGAGATTCTCCAGCCTAGGTTTTTCT
ACCGTCGTAGGCCACCTCATTGAGGGAGAAGAGCGCTTCAGCGTTGAGTT
CCGAGAGCAGGACTCAACGGTATGGCTGGATCTGTACTCGGTCTCAAGGG
GCTCAGGCGTGTTGGGGAAGATAGCCATGCCCGTCATCCGGCCGATACAG
AAGGCGTTCTTTGCCGGACAGTGCCGCGAAATGCTCAGACTTGTGGCGGA
GAAAGACTAGATAGCCATGCCCGTCATCCGGCCGATACAGAAGGCGTTCT
TTGCCGGACAGTGCCGCGAAATGCTCAGACTTGTGGCGGAGAAAGACTAG
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