mRNA_E-siliculosus-1a_F_contig1091.633.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1091.633.1
Unique NamemRNA_E-siliculosus-1a_F_contig1091.633.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: D7FWE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE0_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 2.400e-72
Identity = 161/183 (87.98%), Postives = 166/183 (90.71%), Query Frame = 1 
Query:    1 VKAKSTLAFQQLPRRSSPTAATSAARAAPEAVSRAVNALTKDLYGVGPATASAVLAAGCGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAASLGTPWDAERVRRALWSCAMHSRFGMTVPPV-------SPTGTAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAEAATKKQKSRPH 528
            VKAKSTLAFQQLPR S P++ T+AARA+PEAVSRAVNALTKDLYGVGPATASAVLAAGCGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKA SLGTPWDAERVR+ALWSCAMHSRFGMTVPPV       SP  TA  XXXXXXXXXXXXXXXXXXXXXXX  GAEAATKKQKSRPH
Sbjct:  103 VKAKSTLAFQQLPRPSLPSSPTAAARASPEAVSRAVNALTKDLYGVGPATASAVLAAGCGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAVSLGTPWDAERVRKALWSCAMHSRFGMTVPPVPTGATAASPQETAXXXXXXXXXXXXXXXXXXXXXXXXXADGAEAATKKQKSRPH 285
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5L062_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L062_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 3.480e-71
Identity = 159/176 (90.34%), Postives = 163/176 (92.61%), Query Frame = 1 
Query:    1 VKAKSTLAFQQLPRRSSPTAATSAARAAPEAVSRAVNALTKDLYGVGPATASAVLAAGCGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAASLGTPWDAERVRRALWSCAMHSRFGMTVPPVSPTGTAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAEAATKKQKSRPH 528
            VKAKSTLAFQQLPR SSPT AT+AARA+PEAVSRAVNALTKDLYGVGPATASAVLAA CGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAASLGTPWDAERVR+A+WSCAMHSRFGMTVPPVSP      XXXXXXXXXXXXXXXXXXXXXXXXX   A TKKQKSRPH
Sbjct:    8 VKAKSTLAFQQLPRPSSPTTATAAARASPEAVSRAVNALTKDLYGVGPATASAVLAAECGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAASLGTPWDAERVRKAIWSCAMHSRFGMTVPPVSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-TKKQKSRPH 182
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 5.450e-29
Identity = 69/93 (74.19%), Postives = 72/93 (77.42%), Query Frame = -1 
Query:  688 RLLQPVVTQKDPSLPSPPAVRCLRFFNARRVQRSL-LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDRVHVLE 963
            RLLQPVVTQK PSLPSPPAV CLRF    +      LCTHELALST PGAEAREKLT QEK A+AG+RT DLTS RFRGYQLDHRGDR    E
Sbjct:  123 RLLQPVVTQKSPSLPSPPAVLCLRFLMREQFSTFFPLCTHELALSTRPGAEAREKLTLQEKLAYAGVRTSDLTSRRFRGYQLDHRGDRPDCQE 215
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JLU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.960e-24
Identity = 62/93 (66.67%), Postives = 64/93 (68.82%), Query Frame = -1 
Query:  706 RLLQPVVTQKDPSLPSPPAVRCLRFFNARRVQRSL-------LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGD 963
            RLLQPVVTQK P LPS      LR+F    V           LCTHELALST PGAEAREKL  QEK A+AGIRTPDLTS RFR YQLDHRGD
Sbjct:   14 RLLQPVVTQKSPPLPS-----LLRYFVVVVVFTLKEFSTLFPLCTHELALSTRPGAEAREKLNVQEKLAYAGIRTPDLTSRRFRSYQLDHRGD 101
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JMV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV9_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.300e-20
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = -1 
Query:  703 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDR 858
            LCTHELALST PG EAREKLT QEK A+AGIRTPDLTS RFRGYQLDHRGDR
Sbjct:   11 LCTHELALSTRPGTEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDR 62
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JZN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.180e-18
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = -1 
Query:  706 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGD 858
            L THELALST PGAEAREKLT QEK A+AG RTPDLTS RFRGYQLDHRGD
Sbjct:   11 LRTHELALSTRPGAEAREKLTLQEKLANAGSRTPDLTSKRFRGYQLDHRGD 61
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5L5P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.280e-18
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = -1 
Query:  691 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDRVHVL 858
            LCTHELALST PGAEAREKLT QEK A+AGIRTPDLTS RFRGYQLDHRGDR H +
Sbjct:   11 LCTHELALSTGPGAEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDRRHAV 66
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5KDG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.110e-18
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = -1 
Query:  703 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDR 858
            LCTHELALST PGAEAR+KLTSQE  A+AGIRTPDLTS RFRGY+LDHRGDR
Sbjct:   11 LCTHELALSTRPGAEARQKLTSQENLAYAGIRTPDLTSRRFRGYELDHRGDR 62
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5JFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.280e-17
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = -1 
Query:  700 LCTHELALSTTPGAEAREKLTSQEKFAH-AGIRTPDLTSSRFRGYQLDHRGDRV 858
            LCTHELALST PGAEAREKLT QEK A  AGIRTPDLTS RFRGY+LDH+GDR+
Sbjct:   11 LCTHELALSTRPGAEAREKLTLQEKLASCAGIRTPDLTSRRFRGYRLDHQGDRL 64
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.650e-17
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = -1 
Query:  691 LCTHELALSTTPGAEAREKLTSQEKFAHAGIRTPDLTSSRFRGYQLDHRGDRVHVL 858
            LCTHELALST PG EAREKLT QEK A+AGIRTPDLTS RFRGYQLDHRGDR+  +
Sbjct:   11 LCTHELALSTRPGVEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDRLSFM 66
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1091.633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE0_ECTSI2.400e-7287.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L062_9PHAE3.480e-7190.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ0_9PHAE5.450e-2974.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLU5_9PHAE5.960e-2466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMV9_9PHAE2.300e-2088.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZN8_9PHAE2.180e-1886.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5P9_9PHAE3.280e-1885.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDG2_9PHAE5.110e-1886.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFW4_9PHAE1.280e-1783.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L694_9PHAE1.650e-1782.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1091contigE-siliculosus-1a_F_contig1091:33570..36992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size531
Model size2209
Exons3
Ec32 orthologEc-09_004040.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorymitochondrion
Best eggNOG OGNA|NA|NA
Best tax levelMetazoa
EggNOG OGs28ITR@1,2QR55@2759,39PFD@33154,3BMTK@33208
GOsGO:0001654,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0007275,GO:0007423,GO:0007444,GO:0008150,GO:0009888,GO:0022416,GO:0032501,GO:0032502,GO:0035220,GO:0035295,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048513,GO:0048731,GO:0048749,GO:0048856,GO:0060429
Seed eggNOG ortholog400682.PAC_15727984
Seed ortholog evalue2.2e-08
Seed ortholog score65.9
Taxonomic scopeMetazoa
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1091.633.1prot_E-siliculosus-1a_F_contig1091.633.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1091 35247..36992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927593.6570795-UTR-E-siliculosus-1a_F_contig1091:33569..352461622927593.6570795-UTR-E-siliculosus-1a_F_contig1091:33569..35246Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1091 33570..35246 -
1696318602.4596252-UTR-E-siliculosus-1a_F_contig1091:33569..352461696318602.4596252-UTR-E-siliculosus-1a_F_contig1091:33569..35246Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1091 33570..35246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927593.674609-CDS-E-siliculosus-1a_F_contig1091:35246..355131622927593.674609-CDS-E-siliculosus-1a_F_contig1091:35246..35513Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1091 35247..35513 -
1696318602.474058-CDS-E-siliculosus-1a_F_contig1091:35246..355131696318602.474058-CDS-E-siliculosus-1a_F_contig1091:35246..35513Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1091 35247..35513 -
1622927593.6862524-CDS-E-siliculosus-1a_F_contig1091:35917..359771622927593.6862524-CDS-E-siliculosus-1a_F_contig1091:35917..35977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1091 35918..35977 -
1696318602.4822974-CDS-E-siliculosus-1a_F_contig1091:35917..359771696318602.4822974-CDS-E-siliculosus-1a_F_contig1091:35917..35977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1091 35918..35977 -
1622927593.6960049-CDS-E-siliculosus-1a_F_contig1091:36788..369921622927593.6960049-CDS-E-siliculosus-1a_F_contig1091:36788..36992Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1091 36789..36992 -
1696318602.4920971-CDS-E-siliculosus-1a_F_contig1091:36788..369921696318602.4920971-CDS-E-siliculosus-1a_F_contig1091:36788..36992Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1091 36789..36992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1091.633.1

>prot_E-siliculosus-1a_F_contig1091.633.1 ID=prot_E-siliculosus-1a_F_contig1091.633.1|Name=mRNA_E-siliculosus-1a_F_contig1091.633.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=177bp
VKAKSTLAFQQLPRRSSPTAATSAARAAPEAVSRAVNALTKDLYGVGPAT
ASAVLAAGCGGCPFDADEVIDAVKRSGKRQYSLKEYLEVHEALDQKAASL
GTPWDAERVRRALWSCAMHSRFGMTVPPVSPTGTAAAAAVSGGRGDDNKP
RARKGGSGGGADGAEAATKKQKSRPH*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1091:33570..36992-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1091.633.1 ID=mRNA_E-siliculosus-1a_F_contig1091.633.1|Name=mRNA_E-siliculosus-1a_F_contig1091.633.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3423bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:33570..36992- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCAAAGCCAAGAGCACCTTGGCCTTCCAGCAGCTTCCGAGGCGGTCTTC
ACCGACCGCCGCGACCTCTGCCGCCCGCGCTGCCCCCGAGGCGGTGTCGA
GGGCCGTGAACGCGCTGACCAAGGACCTGTACGGGGTCGGTCCGGCGACG
GCCTCCGCCGTGCTGGCGGCTGGGTGCGGGGGCTGCCCGTTTGATGCAGA
CGAGGTACATTGGCGTGTGTAGCGTGTACTCGTTTCCATGGGAGGAAGAG
TGTTTGATGCTCCTTTTTTTGTTTTTCTCGCTTATCATGACACACCCAAT
TCATCTCCGCCACAGATGAGGGTCGGGGATAGATTGACAATGAAGTCATG
GCGTCAGCGGAAGTGCTTGATGCCCGCTTGAACCTCCCTGTGAGTGACTT
TGAGGGGTGTTCCTCTGTGAAATCATGAGAAAGATAAGACCTTGGCCGTT
TGTGCGTAGTTATGAATCCTGCACAAAAACCTATATAGTCGCTGTTGGGT
AATTTTTCCCCACAGCTGAAATGAGAAACGAGCCACGCGAGAACTAAGGG
GTACTCAAGCGATCGCGTCTCCTCCAGTTGCTTAGCTCGAGTGTGGATAG
TGTAGCGTGGGGGCGGGGGGCCGCCTGCACCGAGGCGACACGCGCGTTTT
GGCTTAGTTTCCGACGCACGTTGTCGCGAGGGCTTCGGCTAACCCCGACA
CGACGCACGATCAGCAAACCTTCTGTGTGTTCAGTGTCTCGTCGGTGGTC
GGCGGGGGGGTTGGTTGACTCGGGCTTGGCAACAAGCGGACCATGAAGGT
GTGTGGGTGTGTTGCCACGTGCCTACGTGCGCATGCGTTTCTTTACCTGC
AGTAGCGTTCAATCGACACCGCGCTAGCCGGCTAGCCAAAGAGCTAAGTC
TAAGGGGCGTGGTTGTGATTTCGAGCGTCAGCATTCTCTCACGTGCTGTG
TGAGAAATACCTTGTTTGACGCACGTCTTGCGGGTGTTCGGCTTGATAAA
ATTTGCATCGATCAGGTTATCGATGCAGTCAAGCGGTCCGGGAAACGCCA
GTACAGTCTCAAGGAGTACCTAGAGGTGAGGAAGACTTCTTGTGTGCCTG
CAATTGATGGGGAGAAGGGGTACATTTCCTCAGAATTGATGTGAGCATCT
GAACACGCACAGTTGGTGAAGAGCTGAGAGTGAGAAGAGTGGGAAGCAGC
GTGCGGGAACATACCACCCAGTGCATTATTTCGTGGTTTGCTGGGATGGA
CAAGCCCAAACACAACCCGGAGGTTTTTTATGTGCCTTCGTATAGTACGG
GCCAAAAATACGGCACGTTGTGCACGTGCCGCGATACCCCAGGATTCCTA
CATTTCTTAACGAGTGATGTACTTTTTCGCCTCGAAAACTTGAGGCAAAG
CTGCAAGCACTGCCAACAAGGCCGCCCACCACTTTCCCCCGTCAACCCAC
CCCGACTCGCTACATGGATTCTACCCCAGGTCCACGAAGCCCTGGACCAG
AAAGCCGCCAGCTTGGGAACTCCCTGGGACGCCGAGCGTGTCCGCAGGGC
GCTCTGGTCGTGCGCGATGCACTCACGCTTCGGAATGACAGTCCCGCCCG
TGTCGCCGACGGGGACGGCGGCGGCGGCGGCGGTGTCGGGCGGCAGAGGC
GACGACAACAAGCCCCGAGCAAGAAAAGGCGGCAGTGGGGGGGGCGCAGA
CGGGGCAGAAGCAGCAACGAAGAAGCAAAAGTCTCGTCCCCATTGATGCG
TCGTGTGCGTGCGCCATTTGATGCAAGGTTTCCCTGTACACCAGAACGAT
GTGGCTGCTGGGACGCCGGTGTGGCCGGTGGTGGGAGGAGAGCGGGTAAA
GAGGGCGCGCGACAGAGGTTAGGGCCGGAGAATCGAAGGCGATGGATCAA
TCTTCTAACACGTGTACACGATCGCCCCGGTGGTCTAGTTGGTATCCTCG
AAACCTGCTAGAGGTCAGGTCAGGGGTTCGAATCCCGGCGTGAGCGAACT
TTTCTTGCGAAGTGAGTTTTTCTCTCGCTTCCGCTCCTGGCGTAGTGGAT
AGCGCTAGTTCGTGCGTACACAGAAGAGAGCGCTGAACTCTTCTCGCATT
AAAAAATCGAAGGCAACGTACCGCAGGAGGGGAGGGTAGAGAGGGATCCT
TCTGTGTGACCACGGGTTGGAGCAAACGGCGCTAGTGCTGTGAGCGCTGA
TTTGAAGTGAAGACAAAAAAAAAACACGAATTCAGCCGGTCGGTACTTCG
GCCATATATCGGTGTCGACACGTTGCACGCTCACTCCGGTCGCGGTTCAC
GAGCTTGCTCACACCAGCCGTCGGGATCAGGGGCGAAAACCGTAAGCAGT
ACGAGCTGCATGTGGCGGTGTTGCTACCCGCTCCTCTAACCAGCGGCGGC
AGTAACAACGTGGCCTCACCATCTTGAGACCCCGGCAGTGTTTTACAGGA
CGCCGGCTCAATCCCGACGATGAACAAGGCGGGCTTCAGAGTCTGGACGG
GGGCTTACCACAGCCTGTTACCACGTCCCGTAGAATGCCGGCTAGACGGG
TGGTGTGTTTCAACCAAGACTACGGCAGCCTCCGCTGTCGTACGGCAGCC
TCCGCTGTCGCGTCGATTGACGCAGGGGTTGGTTTGCGATGGTCAGGTCG
GGGGCGTGCTGCTATCGGCTAGCCGGCGGCGAGGTTTGCAGCGAGCGGCG
AAGCGGGTGGAGACGGAATGCTCCGACGGAGGTCTTTGAGAATGACAGAT
AACAAAAGGTGGGGTTGTTATTGCGGTGCAATAGGTTCGAGAGGTTCAAT
GTTCTCGTCGTCTCGGTGTGTGTTGCCGGTAAATTTTGAGCCACCTGTGA
CGACGGGTTTGGGGTGCGCCCTGCCTGGATATTTTCAGTAATCTAAGCAG
GTTTTCATCATGCAGACATGTTGGATGAAGTGTCGAATCGGTGGAATTTA
GGGGATAATGGTTGGAGGGTCTACGTAAGCCCTCTCTATTCATAACTAGC
TTAATTGCTTCGCGTCCTGGCAAATACTGGTACATGGTTATTTTTTAATT
TCGTCACAAGTTCTTGTCCGCTGTTGGCTTGCTGGGAAGGAGTTCTGTGG
AAGCAGTGGATGGGCAAAAACCAACAAGCACTGGCAGCAGACACCATAGA
CGCTAGTGAACGGTTCGGAGCGTTCAGTGCCTCGAAAAGAACTTAATTGG
CGTATGCATAGTGCATGTGTGTTTGTATTGTTGACATCGACTGCGCTAAC
CGGCTGACCAAGCAAAATACGTCAGTCTCAGCGCCTGGCTCACGAAGGAC
GTTATATGTGTGTGGGTGAACGGATCCTTGGTCTTTCCTTGTGACTTTCC
GGACGCCAGTGTCACCCCCACCTCACGAGCTACAATTTTTACGTTGGGCA
GGGATCGCGGCAGGTCAAAAAAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1091:33570..36992-

>mRNA_E-siliculosus-1a_F_contig1091.633.1 ID=mRNA_E-siliculosus-1a_F_contig1091.633.1|Name=mRNA_E-siliculosus-1a_F_contig1091.633.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:33570..36992- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCAAAGCCAAGAGCACCTTGGCCTTCCAGCAGCTTCCGAGGCGGTCTTC
ACCGACCGCCGCGACCTCTGCCGCCCGCGCTGCCCCCGAGGCGGTGTCGA
GGGCCGTGAACGCGCTGACCAAGGACCTGTACGGGGTCGGTCCGGCGACG
GCCTCCGCCGTGCTGGCGGCTGGGTGCGGGGGCTGCCCGTTTGATGCAGA
CGAGGTCAAAGCCAAGAGCACCTTGGCCTTCCAGCAGCTTCCGAGGCGGT
CTTCACCGACCGCCGCGACCTCTGCCGCCCGCGCTGCCCCCGAGGCGGTG
TCGAGGGCCGTGAACGCGCTGACCAAGGACCTGTACGGGGTCGGTCCGGC
GACGGCCTCCGCCGTGCTGGCGGCTGGGTGCGGGGGCTGCCCGTTTGATG
CAGACGAGGTTATCGATGCAGTCAAGCGGTCCGGGAAACGCCAGTACAGT
CTCAAGGAGTACCTAGAGGTTATCGATGCAGTCAAGCGGTCCGGGAAACG
CCAGTACAGTCTCAAGGAGTACCTAGAGGTCCACGAAGCCCTGGACCAGA
AAGCCGCCAGCTTGGGAACTCCCTGGGACGCCGAGCGTGTCCGCAGGGCG
CTCTGGTCGTGCGCGATGCACTCACGCTTCGGAATGACAGTCCCGCCCGT
GTCGCCGACGGGGACGGCGGCGGCGGCGGCGGTGTCGGGCGGCAGAGGCG
ACGACAACAAGCCCCGAGCAAGAAAAGGCGGCAGTGGGGGGGGCGCAGAC
GGGGCAGAAGCAGCAACGAAGAAGCAAAAGTCTCGTCCCCATTGAGTCCA
CGAAGCCCTGGACCAGAAAGCCGCCAGCTTGGGAACTCCCTGGGACGCCG
AGCGTGTCCGCAGGGCGCTCTGGTCGTGCGCGATGCACTCACGCTTCGGA
ATGACAGTCCCGCCCGTGTCGCCGACGGGGACGGCGGCGGCGGCGGCGGT
GTCGGGCGGCAGAGGCGACGACAACAAGCCCCGAGCAAGAAAAGGCGGCA
GTGGGGGGGGCGCAGACGGGGCAGAAGCAGCAACGAAGAAGCAAAAGTCT
CGTCCCCATTGA
back to top