mRNA_E-siliculosus-1a_F_contig1091.629.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1091.629.1
Unique NamemRNA_E-siliculosus-1a_F_contig1091.629.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.629.1 vs. uniprot
Match: D7G552_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G552_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.060e-68
Identity = 112/147 (76.19%), Postives = 123/147 (83.67%), Query Frame = 1 
Query:    1 PQGLEEEANEERRDNVRARILRYQRGQALPEETCDILVDMWHKGELKDDTDSFGDGLEGLDNGLFYGFLSRDNAPPYHVGRREDDGDSFWSKGRGEARRRHTDRVFRACLRPVFRCILR-EISRGL*WGLLVKQLLRSASLSWGALE 438
            P+G EEEANEERRD+VRARILR Q GQAL +ETCDILVDMWHKGELKD TDSFGDG  G+DNGLFYGFLSRDNAPPY+  RREDDGDSFWSKG  EARRRH+DRVFRACL   F  ++  +I+R + WGLLVKQLL S S SWG LE
Sbjct:    8 PRGPEEEANEERRDDVRARILRCQHGQALAKETCDILVDMWHKGELKDGTDSFGDGSRGIDNGLFYGFLSRDNAPPYNARRREDDGDSFWSKG--EARRRHSDRVFRACLTAGFPVLIEGDITRSV-WGLLVKQLLGSTSRSWGTLE 151
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.629.1 vs. uniprot
Match: D7G7Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 9.880e-55
Identity = 95/114 (83.33%), Postives = 99/114 (86.84%), Query Frame = 1 
Query:    1 PQGLEEEANEERRDNVRARILRYQRGQALPEETCDILVDMWHKGELKDDTDSFGDGLEGLDNGLFYGFLSRDNAPPYHVGRREDDGDSFWSKGRGEARRRHTDRVFRACLRPVF 342
            P+G EEEANEERRDNVRARILR Q GQAL +ETCDILVDMWHKGELKD TDS GDG   LDNGLFYGFLSRDNAPPY+V RREDDGDSFWSKG  EARRRH+DRVFRACL   F
Sbjct:    8 PRGPEEEANEERRDNVRARILRCQHGQALAKETCDILVDMWHKGELKDGTDSLGDGFGCLDNGLFYGFLSRDNAPPYNVRRREDDGDSFWSKG--EARRRHSDRVFRACLTAGF 119
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1091.629.1 vs. uniprot
Match: D7G2S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.420e-23
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:   16 EEANEERRDNVRARILRYQRGQALPEETCDILVDMWHKGELKDDTDSFGDGLEGLDNGLFYGFLSRDNAPPYHVGRREDDGDSFWSKGRGEARRRHTDRVFRACLRPVF 342
            E+ NE RR +++ RILR Q G  L    C+ LVD+W KGEL D T+ FG+G +G DNGLF G+L   NAPPY  GRR+D   +FWSKG    R  +T+  F+ACL+  F
Sbjct:  244 EQPNENRRSDIKRRILRSQEG-GLDNYICEFLVDIWEKGELIDGTEGFGNGADGFDNGLFCGYLDMANAPPYVPGRRDDPTVAFWSKGTD--RLEYTEHAFKACLKAHF 349
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1091.629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G552_ECTSI1.060e-6876.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7Y6_ECTSI9.880e-5583.33Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G2S5_ECTSI2.420e-2350.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1091contigE-siliculosus-1a_F_contig1091:1488..1925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size261
Model size438
Exons1
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-00_008520.1
Ec32 ortholog descriptionconserved unknown protein
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1091.629.1prot_E-siliculosus-1a_F_contig1091.629.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1091 1548..1808 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927592.8873727-UTR-E-siliculosus-1a_F_contig1091:1487..15471622927592.8873727-UTR-E-siliculosus-1a_F_contig1091:1487..1547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1091 1488..1547 -
1696318602.02591-UTR-E-siliculosus-1a_F_contig1091:1487..15471696318602.02591-UTR-E-siliculosus-1a_F_contig1091:1487..1547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1091 1488..1547 -
1622927592.9083018-UTR-E-siliculosus-1a_F_contig1091:1808..19251622927592.9083018-UTR-E-siliculosus-1a_F_contig1091:1808..1925Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1091 1809..1925 -
1696318602.0528898-UTR-E-siliculosus-1a_F_contig1091:1808..19251696318602.0528898-UTR-E-siliculosus-1a_F_contig1091:1808..1925Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1091 1809..1925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927592.8981905-CDS-E-siliculosus-1a_F_contig1091:1547..18081622927592.8981905-CDS-E-siliculosus-1a_F_contig1091:1547..1808Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1091 1548..1808 -
1696318602.040075-CDS-E-siliculosus-1a_F_contig1091:1547..18081696318602.040075-CDS-E-siliculosus-1a_F_contig1091:1547..1808Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1091 1548..1808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1091.629.1

>prot_E-siliculosus-1a_F_contig1091.629.1 ID=prot_E-siliculosus-1a_F_contig1091.629.1|Name=mRNA_E-siliculosus-1a_F_contig1091.629.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=87bp
MWHKGELKDDTDSFGDGLEGLDNGLFYGFLSRDNAPPYHVGRREDDGDSF
WSKGRGEARRRHTDRVFRACLRPVFRCILREISRGL*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1091:1488..1925-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1091.629.1 ID=mRNA_E-siliculosus-1a_F_contig1091.629.1|Name=mRNA_E-siliculosus-1a_F_contig1091.629.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:1488..1925- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCAGGGTCTGGAGGAAGAAGCGAACGAGGAGAGACGCGACAATGTCAG
GGCGCGCATCCTCCGCTACCAACGTGGCCAAGCCCTGCCAGAGGAAACTT
GCGACATCCTGGTCGACATGTGGCACAAGGGAGAACTCAAAGATGACACG
GATAGCTTCGGTGATGGGCTTGAGGGTCTCGACAATGGTCTCTTTTACGG
ATTCCTTTCAAGAGACAACGCCCCCCCCTACCATGTTGGTAGGAGAGAGG
ACGATGGCGACTCCTTCTGGAGCAAAGGGCGAGGCGAGGCTAGACGAAGG
CATACCGACCGCGTGTTCCGCGCATGCTTAAGGCCGGTTTTCCGGTGCAT
ATTGAGGGAGATATCACGCGGTCTGTAGTGGGGGCTGCTAGTAAAGCAGT
TGTTGCGAAGCGCATCTCTAAGCTGGGGAGCCTTGGAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1091:1488..1925-

>mRNA_E-siliculosus-1a_F_contig1091.629.1 ID=mRNA_E-siliculosus-1a_F_contig1091.629.1|Name=mRNA_E-siliculosus-1a_F_contig1091.629.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1091:1488..1925- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGCACAAGGGAGAACTCAAAGATGACACGGATAGCTTCGGTGATGG
GCTTGAGGGTCTCGACAATGGTCTCTTTTACGGATTCCTTTCAAGAGACA
ACGCCCCCCCCTACCATGTTGGTAGGAGAGAGGACGATGGCGACTCCTTC
TGGAGCAAAGGGCGAGGCGAGGCTAGACGAAGGCATACCGACCGCGTGTT
CCGCGCATGCTTAAGGCCGGTTTTCCGGTGCATATTGAGGGAGATATCAC
GCGGTCTGTAGATGTGGCACAAGGGAGAACTCAAAGATGACACGGATAGC
TTCGGTGATGGGCTTGAGGGTCTCGACAATGGTCTCTTTTACGGATTCCT
TTCAAGAGACAACGCCCCCCCCTACCATGTTGGTAGGAGAGAGGACGATG
GCGACTCCTTCTGGAGCAAAGGGCGAGGCGAGGCTAGACGAAGGCATACC
GACCGCGTGTTCCGCGCATGCTTAAGGCCGGTTTTCCGGTGCATATTGAG
GGAGATATCACGCGGTCTGTAG
back to top