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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1090.626.1 vs. uniprot
Match: D7FRM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM6_ECTSI) HSP 1 Score: 350 bits (899), Expect = 1.060e-117 Identity = 235/241 (97.51%), Postives = 240/241 (99.59%), Query Frame = 3
Query: 21 MSDQATDKHAVADDGEIGIEEEVRDFAARFSRLVVSRAFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKQMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 740
MSDQATDK+AVADDGE+GIEEEVRDFAARF+RLVVSR+FREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVK+MEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL
Sbjct: 1 MSDQATDKNAVADDGEVGIEEEVRDFAARFARLVVSRSFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 241
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 723 |
| Model size | 1169 |
| Exons | 2 |
| Ec32 ortholog | Ec-12_002480.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927592.5979667-UTR-E-siliculosus-1a_F_contig1090:31720..31740 | 1622927592.5979667-UTR-E-siliculosus-1a_F_contig1090:31720..31740 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1090 31721..31740 + |
| 1696318601.8672326-UTR-E-siliculosus-1a_F_contig1090:31720..31740 | 1696318601.8672326-UTR-E-siliculosus-1a_F_contig1090:31720..31740 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1090 31721..31740 + |
| 1622927592.6366813-UTR-E-siliculosus-1a_F_contig1090:32767..33193 | 1622927592.6366813-UTR-E-siliculosus-1a_F_contig1090:32767..33193 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1090 32768..33193 + |
| 1696318601.896022-UTR-E-siliculosus-1a_F_contig1090:32767..33193 | 1696318601.896022-UTR-E-siliculosus-1a_F_contig1090:32767..33193 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1090 32768..33193 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1090.626.1 >prot_E-siliculosus-1a_F_contig1090.626.1 ID=prot_E-siliculosus-1a_F_contig1090.626.1|Name=mRNA_E-siliculosus-1a_F_contig1090.626.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=241bp
MSDQATDKHAVADDGEIGIEEEVRDFAARFSRLVVSRAFREGGGAAAAAD
GGSGSGSEAGGSATTAAAASTTPRPGGVAAAAAASGDSGRNPGGSSSLRP
GERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLH
ALYVAIDRVTEEVMPEVDATVKQMEKAVYDLEEMRKEQVDTRAPQGSFGL
GLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL* back to topmRNA from alignment at E-siliculosus-1a_F_contig1090:31721..33193+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1090.626.1 ID=mRNA_E-siliculosus-1a_F_contig1090.626.1|Name=mRNA_E-siliculosus-1a_F_contig1090.626.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1473bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1090:31721..33193+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGATCCGCCGCGACCAGAGATGTCGGATCAAGCAACAGACAAACACGCC
GTGGCCGATGACGGCGAGATCGGGATCGAGGAAGAAGTGAGAGACTTCGC
CGCTCGTTTCTCGCGCCTCGTCGTCAGCCGCGCCTTCCGAGAAGGCGGCG
GGGCGGCGGCCGCCGCCGACGGCGGCAGCGGCAGTGGCAGCGAAGCTGGC
GGCAGCGCTACAACCGCGGCGGCGGCCTCCACGACTCCACGGCCAGGAGG
CGTTGCTGCTGCTGCTGCTGCTAGCGGTGACAGCGGTAGGAACCCCGGCG
GATCGTCGTCATTGCGACCGGGTGAGCGGAGCGCCTTGGGATCGTACGTG
GCGGAGGCGGAGCTCAGCCTGCGAGGGTCGCAACGGCTCGGGGCGCAGCT
CGAGAAGGACGCCGGCATGCTGCGGTCGAAGGTGTTCCCGGCCTTACTAG
AGAACGCCCGCAAGCTGCACGCGTTGTACGTGGCCATCGACCGGGTGACC
GAGGAGGTCATGCCTGAGGTATGTGTGTGTGTTGTGTGTGTTTTCCGTTG
ACCGCTCTAGCCGGCTGACCAAGAAGTTACGGCAGTCGTATGGCGGGACG
TAAATTTGCGGTCTCCCCTGACAACAGTGTACGTGTGTTTCTATTGGATA
GACGACAATTTAGGTCACACGAGCCGCAGCCGGCTGTCAGATAAGCTGCG
CTCTCGGTCGCTGCTGAACACGTCAAGAACTAAATACTTGCAGAGAACGA
CGCTAGTATAACTGCTGTAGAAGTAGTGCTCTTGATAAAGCAGTGCTGAT
GTCCTCCCGACCCTCTCGACAGGTGGACGCGACGGTCAAGCAGATGGAGA
AGGCCGTCTACGATCTCGAGGAGATGAGAAAGGAGCAGGTCGACACGAGA
GCCCCGCAGGGGTCGTTTGGGCTGGGGTTGGCCCTGGGGGCCGGGCTGTG
GTTCCCTCAGATGAAAGAGAAGGGCGTCACCGTTCCGGAGGTCTTCGACA
CAGACAAGCTCTTCCGAGTCGAGGAAGGTGGTTTGGCTCCTCTTTGAGGC
GAACGGGCAGGGGAGGCGATCATAAAGACGTTATATTTTTTTCGCTTTAG
ACGTGTTGGCTCTGTAAGAACACTGCATGAGGGCTTGATAACCACATTGT
TCAGGGATCGGGGGCGATTCCGTCGCAACATTTCCGTCGATGTAAAGCGT
GAAGTAAGGTGTGACTGTCCAAAATCGGGGTTTCGTTCGTTCTCTCATTT
TTACTGTTTCCACGCGTCTTTTTTGGGTGCTTGGGAACCAGCCATCTGCC
GCCGTCCTTCAATTCTTCCACTCTTAACGTGTGTACATACATCGTAATGG
CCTCGTGGAAAGAAAGTTATTCTGATACCAACACGAATCTCGTTCTTGGA
CAGTTTCAGACTCTTGTAAATAGACAAGGGTCAGGTGCATCCTAGGTGCA
TGCTCCAAAGGAGAATGTTACGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1090:31721..33193+ >mRNA_E-siliculosus-1a_F_contig1090.626.1 ID=mRNA_E-siliculosus-1a_F_contig1090.626.1|Name=mRNA_E-siliculosus-1a_F_contig1090.626.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1446bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1090:31721..33193+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGGATCAAGCAACAGACAAACACGCCGTGGCCGATGACGGCGAGAT
CGGGATCGAGGAAGAAGTGAGAGACTTCGCCGCTCGTTTCTCGCGCCTCG
TCGTCAGCCGCGCCTTCCGAGAAGGCGGCGGGGCGGCGGCCGCCGCCGAC
GGCGGCAGCGGCAGTGGCAGCGAAGCTGGCGGCAGCGCTACAACCGCGGC
GGCGGCCTCCACGACTCCACGGCCAGGAGGCGTTGCTGCTGCTGCTGCTG
CTAGCGGTGACAGCGGTAGGAACCCCGGCGGATCGTCGTCATTGCGACCG
GGTGAGCGGAGCGCCTTGGGATCGTACGTGGCGGAGGCGGAGCTCAGCCT
GCGAGGGTCGCAACGGCTCGGGGCGCAGCTCGAGAAGGACGCCGGCATGC
TGCGGTCGAAGGTGTTCCCGGCCTTACTAGAGAACGCCCGCAAGCTGCAC
GCGTTGTACGTGGCCATCGACCGGGTGACCGAGGAGGTCATGCCTGAGAT
GTCGGATCAAGCAACAGACAAACACGCCGTGGCCGATGACGGCGAGATCG
GGATCGAGGAAGAAGTGAGAGACTTCGCCGCTCGTTTCTCGCGCCTCGTC
GTCAGCCGCGCCTTCCGAGAAGGCGGCGGGGCGGCGGCCGCCGCCGACGG
CGGCAGCGGCAGTGGCAGCGAAGCTGGCGGCAGCGCTACAACCGCGGCGG
CGGCCTCCACGACTCCACGGCCAGGAGGCGTTGCTGCTGCTGCTGCTGCT
AGCGGTGACAGCGGTAGGAACCCCGGCGGATCGTCGTCATTGCGACCGGG
TGAGCGGAGCGCCTTGGGATCGTACGTGGCGGAGGCGGAGCTCAGCCTGC
GAGGGTCGCAACGGCTCGGGGCGCAGCTCGAGAAGGACGCCGGCATGCTG
CGGTCGAAGGTGTTCCCGGCCTTACTAGAGAACGCCCGCAAGCTGCACGC
GTTGTACGTGGCCATCGACCGGGTGACCGAGGAGGTCATGCCTGAGGTGG
ACGCGACGGTCAAGCAGATGGAGAAGGCCGTCTACGATCTCGAGGAGATG
AGAAAGGAGCAGGTCGACACGAGAGCCCCGCAGGGGTCGTTTGGGCTGGG
GTTGGCCCTGGGGGCCGGGCTGTGGTTCCCTCAGATGAAAGAGAAGGGCG
TCACCGTTCCGGAGGTCTTCGACACAGACAAGCTCTTCCGAGTCGAGGAA
GGTGGTTTGGCTCCTCTTTGAGTGGACGCGACGGTCAAGCAGATGGAGAA
GGCCGTCTACGATCTCGAGGAGATGAGAAAGGAGCAGGTCGACACGAGAG
CCCCGCAGGGGTCGTTTGGGCTGGGGTTGGCCCTGGGGGCCGGGCTGTGG
TTCCCTCAGATGAAAGAGAAGGGCGTCACCGTTCCGGAGGTCTTCGACAC
AGACAAGCTCTTCCGAGTCGAGGAAGGTGGTTTGGCTCCTCTTTGA back to top
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