mRNA_E-siliculosus-1a_F_contig1090.624.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1090.624.1
Unique NamemRNA_E-siliculosus-1a_F_contig1090.624.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 7.720e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    4 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN)

HSP 1 Score: 122 bits (305), Expect = 4.170e-35
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    4 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            D   IKLAK+N+VLGRTGNTGNVTQVRVEF+DDP RSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    2 DTAPIKLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: A0A836CPG2_9STRA (40S ribosomal protein S28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.220e-32
Identity = 53/61 (86.89%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:   16 IKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            +KLAKV++VLGRTGNTGNVTQVRV+F+DD +R+IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    5 VKLAKVSRVLGRTGNTGNVTQVRVDFMDDSSRTIIRNVKGPVREGDILCLLEWEREARRLR 65
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.510e-31
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    4 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            D+Q +KL KV  V  RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    2 DSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 66
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: B7GCW6_PHATC (Predicted protein n=4 Tax=Naviculales TaxID=38748 RepID=B7GCW6_PHATC)

HSP 1 Score: 110 bits (275), Expect = 1.620e-30
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLD--DPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D     RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:    3 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDAEGAGRSIVRNVKGPVREGDILCLLEWEREARRLR 67
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: A0A7S0CCP2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.580e-30
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:   10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT------RSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q +KLAKV++VLGRTGNTGNVTQVRVEF+DD        RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:   36 QPVKLAKVSRVLGRTGNTGNVTQVRVEFMDDGNAGGQAGRSIVRNVKGPVREGDILCLLEWEREARRLR 104
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: K3WAC4_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WAC4_GLOUD)

HSP 1 Score: 107 bits (267), Expect = 2.700e-29
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   22 LAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            LAKV  VLGRTGNTGNVTQVRVEFL D  R IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    9 LAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 67
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: K0SWS9_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=K0SWS9_THAOC)

HSP 1 Score: 109 bits (273), Expect = 1.190e-28
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:   10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D        RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:  129 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDADAGTGTGRSIVRNVKGPVREGDILCLLEWEREARRLR 196
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: A0A2R5G0Q3_9STRA (40S ribosomal protein S28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0Q3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.540e-28
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q + LA+V +VL RTG TGNVTQVRVEFLDD  RSIIRNVKGPVREGD+L LLEWEREARRLR
Sbjct:   10 QAVMLARVTRVLSRTGATGNVTQVRVEFLDDDPRSIIRNVKGPVREGDVLTLLEWEREARRLR 72
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BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Match: A0A1E7FGX9_9STRA (Ribosomal protein S28e (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGX9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.990e-28
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   19 KLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 198
            KLAKV+KVLGRTGNTGNVTQVRVEF+D  +     RSI+RNVKGPVRE DILCLLEWEREARRLR
Sbjct:    1 KLAKVSKVLGRTGNTGNVTQVRVEFMDAESGAGSGRSIVRNVKGPVRENDILCLLEWEREARRLR 65
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1090.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRM9_ECTSI7.720e-40100.0040S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID... [more]
F0XVZ1_AURAN4.170e-3589.23Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CPG2_9STRA3.220e-3286.8940S ribosomal protein S28 n=1 Tax=Tribonema minus ... [more]
A0A4D9CYK0_9STRA5.510e-3181.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B7GCW6_PHATC1.620e-3084.62Predicted protein n=4 Tax=Naviculales TaxID=38748 ... [more]
A0A7S0CCP2_9STRA6.580e-3079.71Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K3WAC4_GLOUD2.700e-2989.83Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
K0SWS9_THAOC1.190e-2880.88Uncharacterized protein (Fragment) n=2 Tax=Thalass... [more]
A0A2R5G0Q3_9STRA2.540e-2880.9540S ribosomal protein S28 n=1 Tax=Hondaea fermenta... [more]
A0A1E7FGX9_9STRA2.990e-2881.54Ribosomal protein S28e (Fragment) n=1 Tax=Fragilar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1090contigE-siliculosus-1a_F_contig1090:18566..19811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size201
Model size201
Exons2
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03012,ko04147,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC2.1.1.297,3.6.4.3
EggNOG OGsCOG2053@1,KOG3502@2759
EggNOG free text desc.ribosomal protein
GOsGO:0000028,GO:0000309,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0003824,GO:0004515,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0007444,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009066,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009435,GO:0009888,GO:0009987,GO:0010467,GO:0012505,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0030490,GO:0030867,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034622,GO:0034627,GO:0034628,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035220,GO:0035295,GO:0042175,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0046034,GO:0046483,GO:0046496,GO:0048513,GO:0048731,GO:0048856,GO:0051186,GO:0051188,GO:0055086,GO:0060429,GO:0065003,GO:0070013,GO:0070566,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0072521,GO:0072524,GO:0072525,GO:0090304,GO:0090407,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1990904,GO:1990966
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,ko03320,ko04979,map03010,map03320,map04979
KEGG ReactionR10806
KEGG koko:K02493,ko:K02979,ko:K07767,ko:K08767
KEGG rclassRC00003,RC03279
Preferred namerps28
Seed eggNOG ortholog2880.D7FRM9
Seed ortholog evalue1.5e-29
Seed ortholog score134.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927592.40948-CDS-E-siliculosus-1a_F_contig1090:18565..186881622927592.40948-CDS-E-siliculosus-1a_F_contig1090:18565..18688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1090 18566..18688 -
1696318601.7312102-CDS-E-siliculosus-1a_F_contig1090:18565..186881696318601.7312102-CDS-E-siliculosus-1a_F_contig1090:18565..18688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1090 18566..18688 -
1622927592.421137-CDS-E-siliculosus-1a_F_contig1090:19733..198111622927592.421137-CDS-E-siliculosus-1a_F_contig1090:19733..19811Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1090 19734..19811 -
1696318601.7505064-CDS-E-siliculosus-1a_F_contig1090:19733..198111696318601.7505064-CDS-E-siliculosus-1a_F_contig1090:19733..19811Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1090 19734..19811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1090.624.1prot_E-siliculosus-1a_F_contig1090.624.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1090 18566..19811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1090.624.1

>prot_E-siliculosus-1a_F_contig1090.624.1 ID=prot_E-siliculosus-1a_F_contig1090.624.1|Name=mRNA_E-siliculosus-1a_F_contig1090.624.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=67bp
QDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREG
DILCLLEWEREARRLR*
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mRNA from alignment at E-siliculosus-1a_F_contig1090:18566..19811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1090.624.1 ID=mRNA_E-siliculosus-1a_F_contig1090.624.1|Name=mRNA_E-siliculosus-1a_F_contig1090.624.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1246bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1090:18566..19811- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGACAACCAGGGCATCAAGCTGGCGAAGGTGAACAAGGTGCTCGGCCG
CACCGGTAACACCGGTAACGTGACCCAGGTGAGCCCGTGCTTGACTGTTT
CGAAAAAGTACCGTTCCGCCGAGATCATAATCTGCGTGTGGTGTTTGGAA
AGACTCTGCCAATGAAGGCGGAGTCGCCACTCGTTACTGTGCGTTTGGTA
TCGACTTTCGCTGCAGACGTATAGACGCGCGTGAATTCCTCACGGTTTAC
GTTCCTAAGGACCACACTGCGTGCAAGCGTGTTTCCTCTTGTGTCGGCGT
GGATGTTCCAAGCGCCAGTCTTGTTGCTATGGTTCCATTGTCCGTTGACA
GAACCGTCCACGCAAGAGTTTCCCCCCCTGAAACATTTTCGCAAGTCTTT
TTGTGCAGGGATTGGGGCGAGTGCAAGTGTTTAGTTCGGACGCCGTCGTC
CGTACGGATAAGAGTAGATCAGCAGATCGGGTCGTTTGGAATTAAAATGT
CACCACAACGAAAGGAAACGAACGGCCGTTCGCACGATCTTTTTGTGGTG
CGGCATTTTTTCCAATGGTCTGATCCTGAAACGCTCTCGAACCTGATCCA
TTTTACAGAGCTAGTCGTTCAACCACGTTGGCAAATGACCGCCGCCTTGT
AGTTCGGCATGACTTGTGGTTCTCCGTCGGGTACTATTCACTCTCACACG
GAAATTCCTCTCTTGCGTAATGTTAATACCCACGCGGCTATGACACTGAA
GCAGCGCCATCCGTAGCATCGTGTACATGGTGGTCGATGTGACGGGCTGA
ACCGGCGATTGTGTTGACTTTTTTTGAGGGGGAGCGGGGTGCAGCCTTGT
CCCGGCGAAGCAGGGACAGCACAAAAAATTGTGCGAGCTGTTTTTTTACT
CACGTTTCGGAATTTCCGGGGGTCTTGAAAACCGACCCATGTCCACTTGC
GGTTGGTTTTGCTAAGCAAGAAAGAGTTCGGACAGCAATTTGCTTGAAAA
ATGCCGCGAAAGGGCAGGGCGCTAGTTCACGTGCATGTGAAGCATCTGCT
AGCTCGCCGATCTCGGTTGTTTTGGTGCTCATTTTTGTTTTGTTTGACGC
TCTGGTCCGTTTGTTGTGGGCAGGTCCGCGTGGAGTTCTTGGACGACCCT
ACCCGTTCGATCATCCGTAACGTGAAGGGCCCCGTCCGCGAGGGCGACAT
CCTCTGCCTCCTGGAGTGGGAGCGCGAGGCTCGCCGTCTGAGATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1090:18566..19811-

>mRNA_E-siliculosus-1a_F_contig1090.624.1 ID=mRNA_E-siliculosus-1a_F_contig1090.624.1|Name=mRNA_E-siliculosus-1a_F_contig1090.624.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1090:18566..19811- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGACAACCAGGGCATCAAGCTGGCGAAGGTGAACAAGGTGCTCGGCCG
CACCGGTAACACCGGTAACGTGACCCAGCAGGACAACCAGGGCATCAAGC
TGGCGAAGGTGAACAAGGTGCTCGGCCGCACCGGTAACACCGGTAACGTG
ACCCAGGTCCGCGTGGAGTTCTTGGACGACCCTACCCGTTCGATCATCCG
TAACGTGAAGGGCCCCGTCCGCGAGGGCGACATCCTCTGCCTCCTGGAGT
GGGAGCGCGAGGCTCGCCGTCTGAGATAAGTCCGCGTGGAGTTCTTGGAC
GACCCTACCCGTTCGATCATCCGTAACGTGAAGGGCCCCGTCCGCGAGGG
CGACATCCTCTGCCTCCTGGAGTGGGAGCGCGAGGCTCGCCGTCTGAGAT
AA
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