mRNA_E-siliculosus-1a_F_contig109.618.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig109.618.1
Unique NamemRNA_E-siliculosus-1a_F_contig109.618.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: D7FKV3_ECTSI (GOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV3_ECTSI)

HSP 1 Score: 467 bits (1202), Expect = 2.810e-163
Identity = 242/252 (96.03%), Postives = 247/252 (98.02%), Query Frame = 3
Query:   54 MNALSAHVLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGTLLKQWA 809
            MNALSAHVL+FLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGN+VHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDT  LQDAGGSPKNKEDLAIIT EMD LSKVFEEIKSFQ+LERMQLTQR TAAEDN+ASMVQSSVLET+VLLLVGIGQIIFVRKWFSGKGTLLKQWA
Sbjct:    1 MNALSAHVLVFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNVVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTTDLQDAGGSPKNKEDLAIITKEMDGLSKVFEEIKSFQELERMQLTQRKTAAEDNNASMVQSSVLETIVLLLVGIGQIIFVRKWFSGKGTLLKQWA 252          
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: F0Y4F3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4F3_AURAN)

HSP 1 Score: 76.3 bits (186), Expect = 4.650e-11
Identity = 62/224 (27.68%), Postives = 100/224 (44.64%), Query Frame = 3
Query:  150 CFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEK-----GEYEICLSNDKSYAQEAKHVMLDISEV---VEDGATKKHAKDDTMALQDAGGSP-KNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGTL 794
            C +  +E       +VFV  GGNLD+  ++ GP  + +   +     +      +K  S +++E     A   + +  +  A+      G Y ICL N  S   E K V L +++      DG       +     ++A   P KN E +  I   +  L      +K  Q  ER +L    +  +  H +MV+ S+ ETVV ++  I QI+FVR+WFSGKG +
Sbjct: 2139 CVYEELEARQSASLEVFVLSGGNLDVSVAIDGPFPVVEESGLPRSAHRRGESGLSKPHSAHLVESKQSGAAFAAPHVIEIAADAAVGGGGIYRICLDNAASRISE-KLVTLSVTKAGGAAGDG-------EPVRKKREAEAKPGKNSESIEKIEKRVVSLRSQIAVLKDKQTRERRRLAHHKSLYDAKHNTMVEGSLFETVVYIVCSIFQIVFVRRWFSGKGII 2354          
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: A0A7S2C741_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C741_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.230e-11
Identity = 53/222 (23.87%), Postives = 101/222 (45.50%), Query Frame = 3
Query:  150 CFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKD--DTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGTLLKQWA 809
            C    + E  +   ++FV  GG L +   V+GP        ++ G+  +       IT  + +  N    +    + + F +  G Y +C++ND +     K V +D+ + V     K   KD  ++   +D   + K  E++  +   +  L K   +++  Q+ +R +        +D++  MV  S++ET++ +     Q+IFVRKWF+GKG   + WA
Sbjct:   48 CIIEDIPESHQGTLEIFVESGGKLSVHVVVQGP--------LIPGKNGIPEPSPKTITLLDDIVTNGREEDFDDSFFFSFPSRGGSYRVCIANDMNRIA-TKMVQVDLRKSVASQNDKIEDKDAIESSGSKDGKATSKEPEEVLALEKRIKRLKKSLHKVQRQQEQDRHRQAVHTAVNQDSNNHMVVGSLIETLIFMGTASFQVIFVRKWFAGKGP--QNWA 258          
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: F0ZNA0_DICPU (Emp24/gp25L/p24 family protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNA0_DICPU)

HSP 1 Score: 68.6 bits (166), Expect = 9.050e-10
Identity = 65/247 (26.32%), Postives = 104/247 (42.11%), Query Frame = 3
Query:   54 MNALSAHVLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDA-EKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791
            MN L A  +L  +  + +++A T  IE ++Q CFF YVE          V +GG LDI   +  P     RGN +  R     +   K                     Y F A E G Y++C +N+ S    AK V        E+ A K  AK D++   D                 + ++ +V + +   Q+  R +       +E  +A +V  ++ E VVL+++ IGQI ++RKWF  + +
Sbjct:    1 MNKLVAIFILACIYLIGSSSALTLQIEPKSQECFFNYVEHGKNSLILYQVIRGGLLDINVKITDP-----RGNSIFERLHFDNQMKGK---------------------YSFTAGESGAYKVCFNNEMSRFT-AKVVTFSWDS--EENAEKDAAKGDSITPMDQS---------------VQKIERVLQSVIYEQKKLRFREQSNRDTSESTNARVVWWTIAEVVVLVVMAIGQIWYLRKWFETRSS 203          
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: A0A8J2WN94_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WN94_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.450e-9
Identity = 67/223 (30.04%), Postives = 106/223 (47.53%), Query Frame = 3
Query:  150 CFFRYVEEETKLQAKVFVFKGGN-LDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKIT--SENILEDNDDS---AELFSGYDYKFDAEKGEYEICLSNDKS-YAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGTLL 797
            C +  + E      +VFV  GG  +DI  +V GP ++D+    V G      + +A++T  S  + ED   S     L +  D       G Y ICL N  S Y ++   + +  SE   + A K H KD     +  GG  +N E++  +   +  L      +K  Q  ER +L +     +  H  MVQ+S++ET V +L  + Q++FVR+WF+GKG +L
Sbjct:   39 CIYEELPEGVGGTLEVFVLSGGGEMDIDVAVDGPLKIDE----VSGLPAKNGKPAARVTVKSGGVNEDRFASPTHVALAAPRDGP-----GAYSICLDNSGSRYTEKVVSLAVRTSEDKGNAAVK-HKKD-----KKKGG--RNSENVEKVEARVVALRGQLATLKDKQARERRRLAKHRALYDARHDGMVQASLMETCVYVLCSVFQLVFVRRWFAGKGGML 244          
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: TMEDB_DICDI (Transmembrane emp24 domain-containing protein B n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TMEDB_DICDI)

HSP 1 Score: 61.6 bits (148), Expect = 2.280e-7
Identity = 57/245 (23.27%), Postives = 104/245 (42.45%), Query Frame = 3
Query:   57 NALSAHVLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791
            N L    +L  L  + +++A T  +E ++Q CF+ ++E          V +GG LDI   +  P     +GN +  R     +   K              + F+        E G Y++C +N+ S    AK V    +   E+   K+ AK D++   D                 + ++ +V + +   Q+  R +       +E  +A +V  ++ E +VL+++G+GQI ++RKWF  K T
Sbjct:    5 NQLINICILVTLFLIGSSSALTLQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKLTDP-----KGNTIFERLHFDTQMKGK--------------QSFTA------GESGAYKVCFNNEMSRFT-AKVVTFTWAS--EEEGVKEVAKGDSITPMDQS---------------VQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLRKWFDNKST 206          
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: A0A8J4Q2E2_9MYCE (GOLD domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q2E2_9MYCE)

HSP 1 Score: 60.8 bits (146), Expect = 4.050e-7
Identity = 59/235 (25.11%), Postives = 97/235 (41.28%), Query Frame = 3
Query:   99 VSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIV----HGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791
            +  T A T  IE ++Q CFF ++E E        V +GG LDI   +      D RGN +    H  T +K R+S                           AE G Y++C +N+ S    AK  ++  S  VED      AK D++   D                 + ++ +  + I   Q+  R +       +E  +  +V  S+ E VVL+++G+ QI ++R+WF  + +
Sbjct:   17 ICTTDALTLQIEPKSQECFFNFIEREKTTLILYQVTRGGLLDIDVRI-----FDPRGNTIFSKLHFDTTMKGRQSFVA------------------------AESGAYKLCFNNEMSRFT-AK--VVSFSWTVEDSNNNDIAKGDSLTPMDQS---------------IQKIERTLQSIIHEQKRLRYREQANRDTSESTNGRVVWWSIAEVVVLVVMGVAQIWYLRRWFDSRSS 204          
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: D3BM15_POLPP (Emp24/gp25L/p24 family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BM15_POLPP)

HSP 1 Score: 60.1 bits (144), Expect = 7.210e-7
Identity = 59/245 (24.08%), Postives = 104/245 (42.45%), Query Frame = 3
Query:   75 VLLFLLCCVSATA--ASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGR----TKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791
            +LL ++ C++     A T  IE + Q CF+ YVE          V +GG LDI   +  P     +GN +  R    T +K R+S                           A  G Y++C +N+ S    AK V                    T + +DA  S    + L+ +   + ++ +V + I   Q+  R +       +E+ +A +V+ ++++ +VL+ +G+GQI ++R+WF  K T
Sbjct:    6 LLLAVVLCLAVVNVNALTMQIEPKTQECFYEYVENGKTSIILYQVIRGGLLDIDVRIYDP-----QGNTIFSRLHFDTTMKGRQSFTA------------------------ATSGAYKLCFNNEMSRFT-AKVVTF------------------TWSFEDADNSFVKGDALSPMEQSVQKIERVLQSIVMEQKRMRFREQTNRDTSENTNARVVRWTIIQVLVLVSMGVGQIWYLRRWFDSKST 202          
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: S4RTT6_PETMA (Transmembrane p24 trafficking protein 3 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RTT6_PETMA)

HSP 1 Score: 58.2 bits (139), Expect = 4.710e-6
Identity = 58/255 (22.75%), Postives = 107/255 (41.96%), Query Frame = 3
Query:   36 RADTHTMNALSAHVLLFLLCCVSATAAS-TYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKS-YAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKS---FQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGK 785
            R+   TM  L    L  LL     +AA  T+ +++ A+ CF+  +++  K+     V  GGN D+   V+GP       ++++   + +    A  T +                       +G YEIC SN+ S +  +  +  L + E             +    +D G        +  +T        + E +KS   +Q   R+Q TQ    AE  ++ +   S+ ET++L++VG+GQ++ ++ +FS K
Sbjct:   17 RSGDRTMERLFRTALALLLHASLLSAAEVTFELKDNAKQCFYEDIDQGVKVTLDFQVITGGNYDVDCRVKGPHD-----SVLYNENRKQYDSYAWTTEQ-----------------------RGTYEICFSNEFSTFTHKTVYFDLQVGE-------------EAPLFRDEGTR------VVALTQMESACVTIHEGLKSVDNYQTQHRLQETQDRHQAEVLNSRVNMWSIGETIILVVVGVGQVMLLKSFFSDK 224          
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Match: A0A152A758_9MYCE (GOLD domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A758_9MYCE)

HSP 1 Score: 56.2 bits (134), Expect = 1.540e-5
Identity = 56/243 (23.05%), Postives = 102/243 (41.98%), Query Frame = 3
Query:   75 VLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNIVHGR----TKLKLRKSAKITSENILEDNDDSAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATKKHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQLTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGT 791
            VL+ LL  + +T   T+ +E + Q CF+ YVE          V +GG LDI   +      D +GN +  R    T +K R+S                           AE G Y++C +N+ S    AK +    +  +E+    ++AK  T+   +               + + ++ +V + +   Q+  R +       +E  +  +V  S+ E  +L+++G+ QI ++RKWF  + T
Sbjct:   10 VLVVLLSIIDSTWGLTFQVEPKQQECFYNYVEGGKTSLILYQVIRGGLLDIDIRI-----FDPKGNTIFSRLHFDTTMKGRQSFTA------------------------AESGAYKLCFNNEMSRFT-AKVITFTWN--LEEFNPNEYAKGATLNPME---------------HSIQKIERVLQSVVHEQKRLRYREQANRDTSESTNGRVVWWSIGEVAILVVMGVAQIWYLRKWFDSRST 205          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FKV3_ECTSI2.810e-16396.03GOLD domain-containing protein n=1 Tax=Ectocarpus ... [more]
F0Y4F3_AURAN4.650e-1127.68Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2C741_9STRA5.230e-1123.87Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
F0ZNA0_DICPU9.050e-1026.32Emp24/gp25L/p24 family protein n=1 Tax=Dictyosteli... [more]
A0A8J2WN94_9STRA2.450e-930.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
TMEDB_DICDI2.280e-723.27Transmembrane emp24 domain-containing protein B n=... [more]
A0A8J4Q2E2_9MYCE4.050e-725.11GOLD domain-containing protein n=1 Tax=Polysphondy... [more]
D3BM15_POLPP7.210e-724.08Emp24/gp25L/p24 family protein n=1 Tax=Polysphondy... [more]
S4RTT6_PETMA4.710e-622.75Transmembrane p24 trafficking protein 3 n=2 Tax=Pe... [more]
A0A152A758_9MYCE1.540e-523.05GOLD domain-containing protein n=1 Tax=Tieghemoste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig109contigE-siliculosus-1a_F_contig109:49017..52234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size759
Model size1224
Exons7
Ec32 orthologEc-17_001490.1
Ec32 ortholog descriptionTMP21-related
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko01000,ko02000,ko03400,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC3.1.11.1
EggNOG OGsCOG0666@1,KOG1692@1,KOG1692@2759,KOG2615@1,KOG2615@2759,KOG4177@2759,KOG4373@1,KOG4373@2759
EggNOG free text desc.protein transport
KEGG TC9.B.188.1.2
KEGG koko:K20347,ko:K20777
Seed eggNOG ortholog44056.XP_009035203.1
Seed ortholog evalue2e-10
Seed ortholog score73.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927590.7246573-UTR-E-siliculosus-1a_F_contig109:49016..494281622927590.7246573-UTR-E-siliculosus-1a_F_contig109:49016..49428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 49017..49428 -
1696318600.922508-UTR-E-siliculosus-1a_F_contig109:49016..494281696318600.922508-UTR-E-siliculosus-1a_F_contig109:49016..49428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 49017..49428 -
1622927590.8223145-UTR-E-siliculosus-1a_F_contig109:52181..522341622927590.8223145-UTR-E-siliculosus-1a_F_contig109:52181..52234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 52182..52234 -
1696318601.0000093-UTR-E-siliculosus-1a_F_contig109:52181..522341696318601.0000093-UTR-E-siliculosus-1a_F_contig109:52181..52234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 52182..52234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927590.7352073-CDS-E-siliculosus-1a_F_contig109:49428..495681622927590.7352073-CDS-E-siliculosus-1a_F_contig109:49428..49568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 49429..49568 -
1696318600.9340065-CDS-E-siliculosus-1a_F_contig109:49428..495681696318600.9340065-CDS-E-siliculosus-1a_F_contig109:49428..49568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 49429..49568 -
1622927590.74619-CDS-E-siliculosus-1a_F_contig109:49792..498971622927590.74619-CDS-E-siliculosus-1a_F_contig109:49792..49897Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 49793..49897 -
1696318600.942413-CDS-E-siliculosus-1a_F_contig109:49792..498971696318600.942413-CDS-E-siliculosus-1a_F_contig109:49792..49897Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 49793..49897 -
1622927590.7592485-CDS-E-siliculosus-1a_F_contig109:50211..502891622927590.7592485-CDS-E-siliculosus-1a_F_contig109:50211..50289Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 50212..50289 -
1696318600.9520187-CDS-E-siliculosus-1a_F_contig109:50211..502891696318600.9520187-CDS-E-siliculosus-1a_F_contig109:50211..50289Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 50212..50289 -
1622927590.7727723-CDS-E-siliculosus-1a_F_contig109:50496..505991622927590.7727723-CDS-E-siliculosus-1a_F_contig109:50496..50599Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 50497..50599 -
1696318600.9613557-CDS-E-siliculosus-1a_F_contig109:50496..505991696318600.9613557-CDS-E-siliculosus-1a_F_contig109:50496..50599Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 50497..50599 -
1622927590.7846332-CDS-E-siliculosus-1a_F_contig109:51390..515401622927590.7846332-CDS-E-siliculosus-1a_F_contig109:51390..51540Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 51391..51540 -
1696318600.9712677-CDS-E-siliculosus-1a_F_contig109:51390..515401696318600.9712677-CDS-E-siliculosus-1a_F_contig109:51390..51540Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 51391..51540 -
1622927590.7992656-CDS-E-siliculosus-1a_F_contig109:51871..519131622927590.7992656-CDS-E-siliculosus-1a_F_contig109:51871..51913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 51872..51913 -
1696318600.9809225-CDS-E-siliculosus-1a_F_contig109:51871..519131696318600.9809225-CDS-E-siliculosus-1a_F_contig109:51871..51913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 51872..51913 -
1622927590.8123004-CDS-E-siliculosus-1a_F_contig109:52040..521811622927590.8123004-CDS-E-siliculosus-1a_F_contig109:52040..52181Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 52041..52181 -
1696318600.99038-CDS-E-siliculosus-1a_F_contig109:52040..521811696318600.99038-CDS-E-siliculosus-1a_F_contig109:52040..52181Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 52041..52181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig109.618.1prot_E-siliculosus-1a_F_contig109.618.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig109 49429..52181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig109.618.1

>prot_E-siliculosus-1a_F_contig109.618.1 ID=prot_E-siliculosus-1a_F_contig109.618.1|Name=mRNA_E-siliculosus-1a_F_contig109.618.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=253bp
MNALSAHVLLFLLCCVSATAASTYLIEERAQVCFFRYVEEETKLQAKVFV
FKGGNLDIGFSVRGPSQLDDRGNIVHGRTKLKLRKSAKITSENILEDNDD
SAELFSGYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDGATK
KHAKDDTMALQDAGGSPKNKEDLAIITNEMDELSKVFEEIKSFQQLERMQ
LTQRNTAAEDNHASMVQSSVLETVVLLLVGIGQIIFVRKWFSGKGTLLKQ
WA*
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mRNA from alignment at E-siliculosus-1a_F_contig109:49017..52234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig109.618.1 ID=mRNA_E-siliculosus-1a_F_contig109.618.1|Name=mRNA_E-siliculosus-1a_F_contig109.618.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3218bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:49017..52234- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGAGGCAGCTACCCCTTGGATGTAGTGCTTTCACCGTGCAGACACACAC ACGATGAATGCATTAAGTGCACATGTGCTGCTCTTCTTGCTGTGTTGTGT GTCAGCCACTGCAGCCTCGACGTATCTAATTGAGGAGCGTGCACAAGTCT GCTTTTTCCGCTATGTGGAGGAGGAGACGAAGCTCCAAGCAAAGGTGGGT GATGTTCTCGCTCTACGCACTGCGTGTATACGCTTTGTAACTATCTGCGC GCCAGTTTCTGGAAGTATCATCTGCTGACATTATCTGCTGACAACCCTCT CCCTGTTTTTATCCTCTCCAGGTGTTCGTTTTCAAGGGAGGGAACCTCGA CATTGGGTTTTCGGTGAGCAGGTTACGCCGCACACTCACGTTCTCCGATT CTCCGACTGTAGAATACAAATGTTATATTCTACACAATGTATGCATACCG CCGCCTTGTGTACCGGAGGGCGAGCGCGTGCGACATAGCATACGGCAGTG TAATCAACGACATAGATGCGTGTGGTTCTCTGCCGAGCGAGGGGGGTCAG CAGCCGCTGCGTCGCTCATCGGCGATAAGACGAGCGAGCCACAACGACCG GCGAGAGCTGAAGCCGTACTTCTTTGCTCTAGAAAATGTTCTACGTGACG TGCTGCTTCCCGTGCTTGACGTCGGTGCCTGTTCTCGACACCAGGTGCGC GGGCCATCTCAGCTCGATGATCGCGGGAATATAGTACACGGCAGAACGAA GTTAAAGCTTCGGAAATCAGCAAAGATAACATCGGAAAACATTCTTGAGG ATAATGACGACTCGGCGGAACTATTCTCGGGATACGATTATAAGGTGGGC CTTTTTGTCTTGCACGCTACACATACACTGGAAAGTACACGTCTCGCCAC GCAAAATGGGGGGACTGTACTAGCCATAATAAATAGGACGAAAACACACA CACAAGTTGGTTTGACAGCAGTCCTTTGTGCAGTTTTACCCATTGTACAG GCGTGTGTATGTCTGTAGTAAGATAAGGGCTCCGGCGTCGGTCCAGATAA AAAATTTGCGGGTTTGTATATGCTCGTGATGGCCGTTAGAAATAGTTGTG GGGATTTTCCCAAAGGCTCTAGGCAGCTCCCGCGAATATATATGGCTACA CTGCTGGCCGATTCGAGTTGTGAAGACAGGAGTTCCAGCTTGATGAACAG CTGGTTCGGCGCACGTTCGCCCACATCCCCTTGCCCCTTGAATGTCGAAG GATGTAGGACACCGGGGGTTCGGTTACTTTGTGGGTTACGCTCCAGACAC AACGTATGTCAGCCTGGGGCAGATGAGCCAAGTCGAAAGCAGGCTTTCCG CTTCAACCTACCTTATCACGAGTAACCTGCAGTCGCGCCGCAGACGAAAC GCTACAAATTTGACCGAGGGGAGTACGTGACCAAGGGTGTCTCTGAAGCC CTGAAGGCATGTGGAAACTGGTCAGTGGACGAATACAGTGTAGCCCCTCA GAATATAACAGCCTGACCAGCTCACAGAAGCTGACTCACCTCATCTACGA GCAAAATGAAATAGAGTCCTTGTGCATATCTCCCGCCTCGCGGCATGCTT CTTACGCTTATTTCATCCCATGCTGCATGCCTCAGTTCGATGCTGAGAAG GGAGAGTACGAGATATGCTTGTCCAACGATAAGTCTTACGCGCAAGAGGC CAAGCACGTCATGCTGGACATTTCGGAGGTGGTTGAAGGTGCGTTTTTAT TGCTAATTGCTGTAGAGCTTGCTTGGGGAAGCTATCTAGGTCCGCTTGAC AGGTATAATATAGAAGTAGCCCACTTGCTTCGGCTCCTCATTTATCAGTT GCCTGGTGATGATGCGTGGAATGATGGTTATCGCGTTACGTTACCCCCAT GGAAGCGAATTTGACCTTTTCCCGCTCTCGTTGCTGTGCATACAGACGGC GCCACGAAGAAACACGCGAAAGACGACACCATGGCTTTGCAGGACGCTGG CGGAAGTCCGAAGAACAAGGAGGGTGAGGTTTTGTCCTCGGCTGTAGTGC TGGAACACATTTCAAAATTTTGCCGGACGAAGCATGTACGAGCGCTTTTC TCATGCGTGCACACAGACGAAAATTCAGCATCGTCCAATCGCATCATTCC AGTTTTTGTTGCTTGCGCCTCCCCCCTGCCACTGATACATGCCAACCCGT ACACTCCCCACGTGTGTCAGATATCGATTGACGACTTTTTCCGTCGCTAA CTTCATGGTTATCATGTGTATCTCTTCTCTATGCACGACCTTGATATAGA AGACTGATCGTTTTCACTCTTTCGCGTCATGTCTCAGACCTGGCCATCAT CACGAACGAAATGGACGAGTTGAGCAAGGTTTTCGAGGAAATCAAGAGCT TCCAGCAGCTAGAACGCATGCAACTCACGCAACGGAACACGGGTAAGAAG CTTGCGGTGTGTCGGTGTGTGTTTCTTCTTGCGGAACACTCATACATGAC CTGTGGGTTTTTTCGGGTTCTATCTACGCCTGGTGTGGGACGTGTGCTGT GCGTGTCCTCCAACAAGAGAGTACTGCATAGGCGAACCAAATGTGATCAG TTCTATCTTATGCAACGCCCCTCTTACGCCCCCAAGTTTGCACCGATCGC CCCACGATTGTCGCAGCTGCCGAAGACAACCATGCGAGCATGGTACAAAG CTCGGTGCTGGAAACTGTCGTGCTCCTGCTCGTTGGGATTGGCCAGATAA TTTTTGTGAGGAAGTGGTTCTCCGGGAAAGGGACCCTCCTCAAGCAGTGG GCGTAACAAGCGTAGTTCCCCAAATAGAGTGGTGGAATCAACAGTATGGT CAAACGGGTTTTGTATGTATATATCTGAATCCCCGCAAGGCGATACTCGA CGCGAAGGGGGGAGCAAGATGAGAATATGTGCCGTTGGATGTTCGAAGTC GTTTACAGAGCAACGGACAAAATTCGAGGCGTTGTGTGTCCTACGAAGTT CAGTTGAATCAATGCAGTTGGTGGCGAGGTCTGGCAAAAGTGAACGCATC TTTTTGTTTGAATGACGTGTTTGAGATGGCTTGAGGAGTGGCGCTATTTG GGGTGTATGTGTGCGACCTCGGGACTGCCGAGTTTTGTGCATCGCGTAAT CACCATTCCATCGAACATGGGATAAATCGAAAGGGTTTGTACCACCCTCC GCATGATCGTTATGCCGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:49017..52234-

>mRNA_E-siliculosus-1a_F_contig109.618.1 ID=mRNA_E-siliculosus-1a_F_contig109.618.1|Name=mRNA_E-siliculosus-1a_F_contig109.618.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:49017..52234- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAATGCATTAAGTGCACATGTGCTGCTCTTCTTGCTGTGTTGTGTGTC
AGCCACTGCAGCCTCGACGTATCTAATTGAGGAGCGTGCACAAGTCTGCT
TTTTCCGCTATGTGGAGGAGGAGACGAAGCTCCAAGCAAAGATGAATGCA
TTAAGTGCACATGTGCTGCTCTTCTTGCTGTGTTGTGTGTCAGCCACTGC
AGCCTCGACGTATCTAATTGAGGAGCGTGCACAAGTCTGCTTTTTCCGCT
ATGTGGAGGAGGAGACGAAGCTCCAAGCAAAGGTGTTCGTTTTCAAGGGA
GGGAACCTCGACATTGGGTTTTCGGTGTTCGTTTTCAAGGGAGGGAACCT
CGACATTGGGTTTTCGGTGCGCGGGCCATCTCAGCTCGATGATCGCGGGA
ATATAGTACACGGCAGAACGAAGTTAAAGCTTCGGAAATCAGCAAAGATA
ACATCGGAAAACATTCTTGAGGATAATGACGACTCGGCGGAACTATTCTC
GGGATACGATTATAAGGTGCGCGGGCCATCTCAGCTCGATGATCGCGGGA
ATATAGTACACGGCAGAACGAAGTTAAAGCTTCGGAAATCAGCAAAGATA
ACATCGGAAAACATTCTTGAGGATAATGACGACTCGGCGGAACTATTCTC
GGGATACGATTATAAGTTCGATGCTGAGAAGGGAGAGTACGAGATATGCT
TGTCCAACGATAAGTCTTACGCGCAAGAGGCCAAGCACGTCATGCTGGAC
ATTTCGGAGGTGGTTGAAGTTCGATGCTGAGAAGGGAGAGTACGAGATAT
GCTTGTCCAACGATAAGTCTTACGCGCAAGAGGCCAAGCACGTCATGCTG
GACATTTCGGAGGTGGTTGAAGACGGCGCCACGAAGAAACACGCGAAAGA
CGACACCATGGCTTTGCAGGACGCTGGCGGAAGTCCGAAGAACAAGGAGG
ACGGCGCCACGAAGAAACACGCGAAAGACGACACCATGGCTTTGCAGGAC
GCTGGCGGAAGTCCGAAGAACAAGGAGGACCTGGCCATCATCACGAACGA
AATGGACGAGTTGAGCAAGGTTTTCGAGGAAATCAAGAGCTTCCAGCAGC
TAGAACGCATGCAACTCACGCAACGGAACACGGACCTGGCCATCATCACG
AACGAAATGGACGAGTTGAGCAAGGTTTTCGAGGAAATCAAGAGCTTCCA
GCAGCTAGAACGCATGCAACTCACGCAACGGAACACGGCTGCCGAAGACA
ACCATGCGAGCATGGTACAAAGCTCGGTGCTGGAAACTGTCGTGCTCCTG
CTCGTTGGGATTGGCCAGATAATTTTTGTGAGGAAGTGGTTCTCCGGGAA
AGGGACCCTCCTCAAGCAGTGGGCGTAACTGCCGAAGACAACCATGCGAG
CATGGTACAAAGCTCGGTGCTGGAAACTGTCGTGCTCCTGCTCGTTGGGA
TTGGCCAGATAATTTTTGTGAGGAAGTGGTTCTCCGGGAAAGGGACCCTC
CTCAAGCAGTGGGCGTAA
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