mRNA_E-siliculosus-1a_F_contig109.610.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig109.610.1
Unique NamemRNA_E-siliculosus-1a_F_contig109.610.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: D7FKU4_ECTSI (Chlorophyll binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU4_ECTSI)

HSP 1 Score: 436 bits (1121), Expect = 1.130e-149
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 1 
Query:   85 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILGDTIGNVFTF 741
            MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKI+GDTIGNVFTF
Sbjct:    1 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGDTIGNVFTF 219
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: Q9FEP5_SACLA (Light harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA)

HSP 1 Score: 327 bits (838), Expect = 3.380e-107
Identity = 156/191 (81.68%), Postives = 177/191 (92.67%), Query Frame = 1 
Query:  151 AFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNF--ETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILGD 717
            AFNGA++ATRA++SSAMKMSFENELG Q PLG+WDPLYWLE+ADQERFDRLRYVEIKHGRICMLAILGHI QENVRLPG L+F  +  FADMPNGL A+SKMGP GVAQIV FIGFLE+FVMKQKEGSFPGDMSR+NPFEKQW+SFDEETKLRKRAIELNNGRAAQMGIF L++HE+++ +PY+IN +LG+
Sbjct:    1 AFNGASMATRAKTSSAMKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLGE 191
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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 1.990e-89
Identity = 147/207 (71.01%), Postives = 169/207 (81.64%), Query Frame = 1 
Query:  103 MLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
            M  ACAA ANAFVAPSAFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL  L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+NVRLPG L+      FADMPNG+ A+SK+ P G+AQI AF+GFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PYIIN +LG
Sbjct:    6 MALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLG 212
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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 2.440e-82
Identity = 134/192 (69.79%), Postives = 158/192 (82.29%), Query Frame = 1 
Query:  148 SAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLN--FETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
            SAFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL  L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+NVRLPG L+   +  FADMPNG+ A+SK+ P G+AQI AF+GFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +LG
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 215
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: D7FIR0_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 1.000e-81
Identity = 141/219 (64.38%), Postives = 167/219 (76.26%), Query Frame = 1 
Query:   85 MKCTIAM---LAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWL-EDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNL--NFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILGDTI 723
            MK   AM   +AACAA A+AFVAPSAF GA++     +SS+MKMSFE E+GAQ P+G+WDPL  L +D  QERFDRLRYVEIKHGRI MLAILGHIT +N R PG L  + +  FAD PNGL AISK+  +G+ QI  FIGFLE  VM QKEGSFPGDMS INPFEK+WES+ EE +  KRAIELNNGRAAQMGI  L++HE ++  PY+IN+ILG  +
Sbjct:    1 MKTACAMAAGVAACAATASAFVAPSAFKGASLTAAKPASSSMKMSFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLINPFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGSHV 219
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 258 bits (658), Expect = 7.450e-80
Identity = 134/208 (64.42%), Postives = 161/208 (77.40%), Query Frame = 1 
Query:  100 AMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
            A++A   A A  F  PSAFNGAA+ T A++ SAMKMSFE+E+GAQ PLGFWDPL  L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI AFIGFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN ++G
Sbjct:    4 AVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVG 211
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 2.780e-79
Identity = 134/191 (70.16%), Postives = 156/191 (81.68%), Query Frame = 1 
Query:  151 AFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
            AFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL  LEDADQERF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI AFIGFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +LG
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 371
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 251 bits (642), Expect = 1.500e-77
Identity = 134/204 (65.69%), Postives = 156/204 (76.47%), Query Frame = 1 
Query:  112 ACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGD-MSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
            ACAA A     PSAFNGAA++T A+SSSAMKMSFE+E+GAQ PLGFWDPL  L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W+S   ET+  KRAIELNNGRAAQMGI  +++HE L  +PYI N +LG
Sbjct:    3 ACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLG 205
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 250 bits (638), Expect = 7.030e-77
Identity = 134/213 (62.91%), Postives = 160/213 (75.12%), Query Frame = 1 
Query:   85 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
            MK  I  +A+ A G      PSAFNGAA+ T A+SSSAMKMSFE+E+GAQ PLGFWDPL  LEDADQ+ F+RLRYVE+K GRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W++   ET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +LG
Sbjct:    1 MKSAIMAVASAAPGLRG---PSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 210
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 247 bits (630), Expect = 9.630e-76
Identity = 125/190 (65.79%), Postives = 150/190 (78.95%), Query Frame = 1 
Query:  154 FNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
            FNGAA+AT A+SSSAMKMSFE+E+GAQPP+GFWDPL  + DADQERFDRLRYVEIKHGRI MLA++GHITQ+N RLPG L+F+    FAD PNG+ A SK+ P G  QI+  IG  ELFV+KQ EGSFPGD +   N F+  W++  EET+  KRAIELNNGRAAQMGI A+++HE L  +PYIIN + G
Sbjct:   17 FNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAG 206
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU4_ECTSI1.130e-14999.54Chlorophyll binding protein n=2 Tax=Ectocarpus Tax... [more]
Q9FEP5_SACLA3.380e-10781.68Light harvesting protein lhcf3 (Fragment) n=1 Tax=... [more]
A0A6H5KCX6_9PHAE1.990e-8971.01LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A6H5JHT6_9PHAE2.440e-8269.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIR0_ECTSI1.000e-8164.38Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
FCPB_MACPY7.450e-8064.42Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
D8LNK6_ECTSI2.780e-7970.16Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPF_MACPY1.500e-7765.69Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
FCPC_MACPY7.030e-7762.91Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
FCPE_MACPY9.630e-7665.79Fucoxanthin-chlorophyll a-c binding protein E, chl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig109contigE-siliculosus-1a_F_contig109:261..4229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size660
Model size1573
Exons4
Ec32 orthologEc-17_001410.1
Ec32 ortholog descriptionChlorophyll binding protein
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGs2CDPH@1,2S3EU@2759
EggNOG free text desc.Chlorophyll A-B binding protein
Seed eggNOG ortholog2880.D7FKU4
Seed ortholog evalue7.1e-121
Seed ortholog score439.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig109.610.1prot_E-siliculosus-1a_F_contig109.610.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig109 1485..4145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927589.1766424-UTR-E-siliculosus-1a_F_contig109:260..10681622927589.1766424-UTR-E-siliculosus-1a_F_contig109:260..1068Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 261..1068 -
1696318600.0601513-UTR-E-siliculosus-1a_F_contig109:260..10681696318600.0601513-UTR-E-siliculosus-1a_F_contig109:260..1068Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 261..1068 -
1622927589.1971-UTR-E-siliculosus-1a_F_contig109:1463..14841622927589.1971-UTR-E-siliculosus-1a_F_contig109:1463..1484Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 1464..1484 -
1696318600.0704808-UTR-E-siliculosus-1a_F_contig109:1463..14841696318600.0704808-UTR-E-siliculosus-1a_F_contig109:1463..1484Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 1464..1484 -
1622927589.250999-UTR-E-siliculosus-1a_F_contig109:4145..42291622927589.250999-UTR-E-siliculosus-1a_F_contig109:4145..4229Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 4146..4229 -
1696318600.1251721-UTR-E-siliculosus-1a_F_contig109:4145..42291696318600.1251721-UTR-E-siliculosus-1a_F_contig109:4145..4229Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 4146..4229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927589.2143908-CDS-E-siliculosus-1a_F_contig109:1484..17811622927589.2143908-CDS-E-siliculosus-1a_F_contig109:1484..1781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 1485..1781 -
1696318600.0858319-CDS-E-siliculosus-1a_F_contig109:1484..17811696318600.0858319-CDS-E-siliculosus-1a_F_contig109:1484..1781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 1485..1781 -
1622927589.2252905-CDS-E-siliculosus-1a_F_contig109:2128..24261622927589.2252905-CDS-E-siliculosus-1a_F_contig109:2128..2426Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 2129..2426 -
1696318600.097738-CDS-E-siliculosus-1a_F_contig109:2128..24261696318600.097738-CDS-E-siliculosus-1a_F_contig109:2128..2426Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 2129..2426 -
1622927589.237545-CDS-E-siliculosus-1a_F_contig109:4080..41451622927589.237545-CDS-E-siliculosus-1a_F_contig109:4080..4145Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 4081..4145 -
1696318600.1104753-CDS-E-siliculosus-1a_F_contig109:4080..41451696318600.1104753-CDS-E-siliculosus-1a_F_contig109:4080..4145Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 4081..4145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig109.610.1

>prot_E-siliculosus-1a_F_contig109.610.1 ID=prot_E-siliculosus-1a_F_contig109.610.1|Name=mRNA_E-siliculosus-1a_F_contig109.610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=220bp
MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQ
PPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLP
GNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFP
GDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDG
EPYIINKILGDTIGNVFTF*
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mRNA from alignment at E-siliculosus-1a_F_contig109:261..4229-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig109.610.1 ID=mRNA_E-siliculosus-1a_F_contig109.610.1|Name=mRNA_E-siliculosus-1a_F_contig109.610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3969bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:261..4229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGAGGCATTAGTTGGCCGGCCCGCTGTTGTTCGACGAGTCTCTCTTTTC
ACACTCTCTCCCGGACGTCTAAATCTCTACTAGTATGAAGTGCACCATCG
CTATGTTGGCCGCTTGCGCGGCAGGAGCTAACGCGTTCGTCGCCCCCAGG
TGAGAGGGATACGCCAGTTCTTGGCAAACTTGTGTGCATGCTCCCGCCTC
CCTAGTCACAAATTGTGAGCGTTTTCGACGCCCCCTCTCCGTCAATCGTG
CATGAAACCAGTGGGTGGGTCATGTTGCTTCGGCCACGGCTTATTCTTCC
AACGCGGTTGACGTCGACATGACCCTGGAGAGCATTCAAATTGCCTTCGC
AAAGTGTGTTTGGGCGCGGTTAAACGCCCGTCGATTTCTTGCACAGGTAG
TCGTTAGCCAATGCGATCTTTGCTTCAAGAAAATCGCGGTCCAATGGCGT
GTGTTCGAGAGGCAACGAACGACACATCATGAGCGCACGAGCGAGTCTGA
CGACGTATGACAGCATGTCACAGTACCCACGGGTAGCTTAGTAATGGGGC
TATCCGACGGGAGATGTGCAGGACGTCTCTTTTCCAACGAAGAGCGTGCA
CTTCCCCATGGGTAGCTGGGGTGGTGTTACGGTCAGCGTCATCACCCCAT
GTAGTCAGCACAGCACCCTACCTCTGTTGTACGTCATTCACGACACCCCA
AGCTACAACCTGTTGGTTGCTGTGTAGCTCTCCAAGAGTTTATGGTCACC
GAAGCCGCGGTTGCGCTATTGTGAAGAACGTTGGAGGTTCATGTGTTTGC
CCTGGTTTGCGCAGTCCGCTCTCGCGCTCATACTCCGCGTGATGACACAG
AAATATCATTGCATGTGCAATTTGTTACGTGTTTACATATTGCGGCCGTG
CGGCCGAAGAGGCTCCGTTACTCCCGTGAGATGAGTTTCCCCTCACACTA
TGCCGCCACTCCTGTCTCGCCGTATCTACTGCCGTACACTTTACAAGCTG
ACTCATCGTGTGGGTGGTGCTGTAAAACCGTGGTATACGTGCACATGTGC
ATGTATTCAACAGCAGTACTACTGTATAAGATGTGAACGGCGCCTCTTGT
ACTTGTACGTCTATGCGTGTACGAGATTTGGTTGACTTGCTGCAGTTTCG
GATGCTTGCCGCAGTCTCAGACGTCCTCCAGAGTACACAAACGAACTTCG
AGGCTCGTGTACATCTGTGTGTGGACCGGTGATGCTGTCCGGAGGAACTG
TGTCTGGAGCCCCCAGCAGTCAATTTGACGTCAAGTATGCCCTTGGTACA
ACACTCCTCCATGTCATGTATATTATGCTGTGGTCGAGCGCTTGCTATTT
GTTGCCTTGCTGTTTGAAAACTTGGTCCGGATGGCGTTGTCCAAGTACAC
GTTGTATCATAACATCAAAGACTTGAGAACACCAGTTCGACGCAGATATC
TTCCCGTATCATGTCATCCGGCAAAGTCTTCAAAACACCCAAATGATGAA
ATGATATCACCATCAATGCCGCAGCAGCCATTTTAATCTCCAGCCCCACA
AAAAATGGCTCTTGACCGAAGGATCTTTCTGCTGTGGTTTATAATACATG
TACCGGGTTCGGATCTCGGTTCGTCGTGTCCCATACCAGCAAGCATCGCC
ATGTCTCGGCTGCGGAGCCCGTTTTGGAGCAAGGTAATACTTCTGCTTTC
CTGCAAAGGGCCCAAGTTACCTCTATGCTGTCAAGTCGCCTTCTGGAGCA
TGTGGTGTGTACTGACATGCCTCTTTCTCCTCTCTCGTTGCTCGTTATCT
CAGCGCCTTCAACGGCGCCGCGGTGGCCACCCGGGCCCAGTCGTCCTCCG
CCATGAAGATGTCCTTCGAGAACGAGCTCGGTGCCCAGCCCCCACTCGGG
TTCTGGGACCCTCTCTACTGGCTGGAAGACGCGGACCAGGAGAGGTTCGA
CCGCCTCCGGTACGTGGAGATCAAGCACGGACGCATCTGTATGTTGGCCA
TCCTGGGACACATCACCCAGGAGAACGTACGCCTGCCCGGCAACCTTAAC
TTCGAGACCCCCTTCGCGGACATGCCTAACGGTCTCACCGCCATCAGCAA
GGTGCGTGGTCAAGTCTCGGTTGTACTTCTTGAGGGCACGGTACCGTTAT
TGTTAGAGGCGTGTTCGGCGAGTAGGTGCATTCTGTTTTGCGATGGGGGA
GTGCGAACAACACCGCGGATGCTTTTGTGCTGTCGCGCGTGTTCCGAGAA
ACACGTACTGTGCCCGCCGTGCTTGGCGCAAGTTGACGATTAACGTTGCA
AGCCACTCATGCGGGTTCTGTTGTACCAAGTCCGTGTTCACGGTTGCTTT
CTCAATGGTGTACGCGTGTGCCCCTTTCCGCCTCACCTTTACACCTGACA
CGCAATCAATCCAACCGCTTGTGCGACTTTGTGACTTTGTCACGACAGAT
GGGCCCCTTTGGCGTCGCTCAGATCGTCGCGTTCATCGGCTTCCTCGAGC
TTTTCGTGATGAAGCAGAAGGAGGGCTCCTTCCCGGGCGACATGTCTCGC
ATTAACCCGTTCGAGAAGCAGTGGGAGTCGTTTGACGAGGAGACCAAGCT
CCGGAAGCGCGCGATCGAGCTTAACAACGGCCGTGCCGCGCAGATGGGAA
TCTTCGCTTTGGTCATCCATGAGATCCTTGACGGGGAGCCATACATCATC
AACAAGATCCTCGGCGACACCATCGGCAATGTGTTCACCTTTTAATTAGA
CCCTTACAGATCCTCGGTAAGACATCGTTTCGGTCTTGTTTTTGGCTTGC
ATGGATCACACCACCCGTGACACATACGAAGCTAAGCCAGTTGGCAGAAG
CCGTGTCAGGGTGTGGAGTTGCGAAGTTCGTATGCGTACGTACTATAGTT
TAAAGGAGACGCCTTTGCTCAAGAATTGTTCGGAGCCCCACGCGAAAATG
GTTTGGTTTGTAGCGTTTCGCGCTTGATCTCGATTTGGTCCGAAACATGA
ACATGTAGATCACATCTCTCTGACGTGGGGTTCGGATTGTTTTCCAAGCT
CTGGTTGGACCGGTTAGCGCGTGCGCCGTCGGCTCGATACTAGGCATGAG
TGCTCAACATCTCACACGCCCAATCCCCCATTCGCCGCCGCGCGCGCGTT
GCTTCAAACAGGCACCTCGTACCTTTGCTTCAGTGTTGGCGCAACACACG
CGCGCATGGAGGGGGTCTTTAAATTGCTTGGATCGGTTCCTGCCTTCGTC
GCTCCTGGTTAGCTAGCACGTTGGTTCACACATCATAATTGTCTTGCTTG
TACAGGCCTTCTGCTGAGACATTTTGGCGTCCCTTTTCTTTTGTTGCGGT
GGATCAGAAGTCAGCAGCACTGTCTTGTATTGTGCTGGTCGACGTCGGCG
AGAACGTTGTTGTCGGAGGTTGTGTCTTCCTCTTCCCAAAGTGCGACTTT
TAGGGAATCCCACCGCTGTCTTGTGCTGATGTGGGCATGCCACACTTTCT
TGTGCCACACAGGACGGTTTTTTTTTTCGATTTTCTATCAAAGAGCGCAA
CTGTTGTGTCGCTTTCAATTTTGGGCGTGTGTGGTACGTGCTTTGACTGT
TGCTGCCATGCACGCAAAAAAAATGTGAAGACATCAAGAGAAGAGCTGAT
TTTGTGATTCGAGTGTTGGAATATTGGGGCTGTGCGCACGCGGTGGTTCC
ACCGCTAATGCACTTACAACTTGCGAGTTTCCCTAGAGGAAACCCAAGTG
ACCAAGTTGAGGCAAACTAGGGACTTTTTTTTCTCTATCGAGAGAGCCCT
GTGGCTGAAGATCCTCCGCCGAAAGCCGTTGTCGCAGTTCCTCCAGCAAA
CCCGCCGACCTGCGCGGTATTCCCCAATTGCAAATTGGGGTTTCAGTCAG
CACAATCCCGAAAAAAGCGATATAGAAATCTTGTCCGAAATTTCGATACT
CAAGTCAAGTAATTTGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:261..4229-

>mRNA_E-siliculosus-1a_F_contig109.610.1 ID=mRNA_E-siliculosus-1a_F_contig109.610.1|Name=mRNA_E-siliculosus-1a_F_contig109.610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:261..4229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGTGCACCATCGCTATGTTGGCCGCTTGCGCGGCAGGAGCTAACGC
GTTCGTCGCCCCCAGATGAAGTGCACCATCGCTATGTTGGCCGCTTGCGC
GGCAGGAGCTAACGCGTTCGTCGCCCCCAGCGCCTTCAACGGCGCCGCGG
TGGCCACCCGGGCCCAGTCGTCCTCCGCCATGAAGATGTCCTTCGAGAAC
GAGCTCGGTGCCCAGCCCCCACTCGGGTTCTGGGACCCTCTCTACTGGCT
GGAAGACGCGGACCAGGAGAGGTTCGACCGCCTCCGGTACGTGGAGATCA
AGCACGGACGCATCTGTATGTTGGCCATCCTGGGACACATCACCCAGGAG
AACGTACGCCTGCCCGGCAACCTTAACTTCGAGACCCCCTTCGCGGACAT
GCCTAACGGTCTCACCGCCATCAGCAAGCGCCTTCAACGGCGCCGCGGTG
GCCACCCGGGCCCAGTCGTCCTCCGCCATGAAGATGTCCTTCGAGAACGA
GCTCGGTGCCCAGCCCCCACTCGGGTTCTGGGACCCTCTCTACTGGCTGG
AAGACGCGGACCAGGAGAGGTTCGACCGCCTCCGGTACGTGGAGATCAAG
CACGGACGCATCTGTATGTTGGCCATCCTGGGACACATCACCCAGGAGAA
CGTACGCCTGCCCGGCAACCTTAACTTCGAGACCCCCTTCGCGGACATGC
CTAACGGTCTCACCGCCATCAGCAAGATGGGCCCCTTTGGCGTCGCTCAG
ATCGTCGCGTTCATCGGCTTCCTCGAGCTTTTCGTGATGAAGCAGAAGGA
GGGCTCCTTCCCGGGCGACATGTCTCGCATTAACCCGTTCGAGAAGCAGT
GGGAGTCGTTTGACGAGGAGACCAAGCTCCGGAAGCGCGCGATCGAGCTT
AACAACGGCCGTGCCGCGCAGATGGGAATCTTCGCTTTGGTCATCCATGA
GATCCTTGACGGGGAGCCATACATCATCAACAAGATCCTCGGCGACACCA
TCGGCAATGTGTTCACCTTTTAAATGGGCCCCTTTGGCGTCGCTCAGATC
GTCGCGTTCATCGGCTTCCTCGAGCTTTTCGTGATGAAGCAGAAGGAGGG
CTCCTTCCCGGGCGACATGTCTCGCATTAACCCGTTCGAGAAGCAGTGGG
AGTCGTTTGACGAGGAGACCAAGCTCCGGAAGCGCGCGATCGAGCTTAAC
AACGGCCGTGCCGCGCAGATGGGAATCTTCGCTTTGGTCATCCATGAGAT
CCTTGACGGGGAGCCATACATCATCAACAAGATCCTCGGCGACACCATCG
GCAATGTGTTCACCTTTTAA
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