mRNA_E-siliculosus-1a_F_contig1087.594.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1087.594.1
Unique NamemRNA_E-siliculosus-1a_F_contig1087.594.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1087.594.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE)

HSP 1 Score: 522 bits (1344), Expect = 9.110e-172
Identity = 295/357 (82.63%), Postives = 301/357 (84.31%), Query Frame = 1 
Query:    1 GGGSGKSVVADKSGDSIVSDEGPPGIPSLPAANHGETSGKPCDVSRTAAAAAVAAGAVAATKAYGIREKLEEEEDTGGGADPALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDDXXXXXXXXXXXXXXXXEEVAGRRAPGSCSPLSRPPLNSGPDDGRGERVGQGXXXXXXXXXXXXXXXXXXXTMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPEFDDECGLKVHCSTWDSGSTTASTVSPLRAAVSTVEVDTTVVPIPSPAQRPESSDESGEATE 1071
            GG S KSVVAD+SGDS+VSD  PPG+PSLPAANHGETSGKP  VSRTAAAAAVAAGAVAATKAYGIREK +EEEDTGGGADPALSPRGAPP APFGGMLSGFGCMAPQLSPGKG ARLSPRAGSRLPEIDD                 EVAG+RAPGSCSP SRPPLNSG  DGR ERVGQG                   TMTP+LKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPE DDECGLKVH S WDSGSTT STVSPLRAAVS V VDTTVVPIPSPAQRPESSDESGE TE
Sbjct:  557 GGSSDKSVVADRSGDSVVSDGRPPGMPSLPAANHGETSGKPYGVSRTAAAAAVAAGAVAATKAYGIREKFDEEEDTGGGADPALSPRGAPPSAPFGGMLSGFGCMAPQLSPGKGGARLSPRAGSRLPEIDDDDSSLAEEEEMEENG--EVAGKRAPGSCSPFSRPPLNSGTGDGRSERVGQGGGSASAVSLEKALALSRSCTMTPDLKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPESDDECGLKVH-SPWDSGSTTTSTVSPLRAAVSKVGVDTTVVPIPSPAQRPESSDESGEVTE 910
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BLAST of mRNA_E-siliculosus-1a_F_contig1087.594.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI)

HSP 1 Score: 453 bits (1166), Expect = 3.070e-142
Identity = 268/308 (87.01%), Postives = 272/308 (88.31%), Query Frame = 1 
Query:    1 GGGSGKSVVADKSGDSIVSDEGPPGIPSLPAANHGETSGKPCDVSRTAAAAAVAAGAVAATKAYGIREKLEEEEDTGGGADPALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDDXXXXXXXXXXXXXXXXEEVAGRRAPGSCSPLSRPPLNSGPDDGRGERVGQGXXXXXXXXXXXXXXXXXXXTMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPEFDDECGLKVHCS 924
            GG S KSVVADKSGDS+VSDEGPPG+PSLPAANHGETSGKP DVSRTAAAAAVAAGAVAA KAY IREK + EEDTG GAD ALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDDXXXXXXXXXXXXXXX EEVAGRRAPGSCSPLSRP LNSGPDDGRGERVGQG                   TMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGR LSSVQEVPMEGVPLPGLATPE DDEC LK   +
Sbjct: 1327 GGDSDKSVVADKSGDSVVSDEGPPGMPSLPAANHGETSGKPYDVSRTAAAAAVAAGAVAAAKAYDIREKPDGEEDTGEGADLALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDDXXXXXXXXXXXXXXX-EEVAGRRAPGSCSPLSRPQLNSGPDDGRGERVGQGEASASAVSLEKALDLSRSRTMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRSLSSVQEVPMEGVPLPGLATPEIDDECDLKASAA 1633
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1087.594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEE7_9PHAE9.110e-17282.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLC6_ECTSI3.070e-14287.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1087contigE-siliculosus-1a_F_contig1087:23602..24686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1083
Model size1086
Exons1
Ec32 orthologEc-12_007660.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.9699202-CDS-E-siliculosus-1a_F_contig1087:23601..246841622927586.9699202-CDS-E-siliculosus-1a_F_contig1087:23601..24684Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1087 23602..24684 +
1696318599.099359-CDS-E-siliculosus-1a_F_contig1087:23601..246841696318599.099359-CDS-E-siliculosus-1a_F_contig1087:23601..24684Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1087 23602..24684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1087.594.1prot_E-siliculosus-1a_F_contig1087.594.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1087 23602..24684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1087.594.1

>prot_E-siliculosus-1a_F_contig1087.594.1 ID=prot_E-siliculosus-1a_F_contig1087.594.1|Name=mRNA_E-siliculosus-1a_F_contig1087.594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=361bp
GGGSGKSVVADKSGDSIVSDEGPPGIPSLPAANHGETSGKPCDVSRTAAA
AAVAAGAVAATKAYGIREKLEEEEDTGGGADPALSPRGAPPPAPFGGMLS
GFGCMAPQLSPGKGAARLSPRAGSRLPEIDDDDDESSLAEEEEMEENEEV
AGRRAPGSCSPLSRPPLNSGPDDGRGERVGQGEGSASAVSLETALALSRS
RTMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAAL
LAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPEFDDE
CGLKVHCSTWDSGSTTASTVSPLRAAVSTVEVDTTVVPIPSPAQRPESSD
ESGEATEEEEE
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mRNA from alignment at E-siliculosus-1a_F_contig1087:23602..24686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1087.594.1 ID=mRNA_E-siliculosus-1a_F_contig1087.594.1|Name=mRNA_E-siliculosus-1a_F_contig1087.594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1085bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1087:23602..24686+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGGCGGCTCTGGCAAGAGCGTTGTCGCTGACAAGAGCGGCGACAGCAT
CGTGTCCGACGAAGGGCCTCCGGGGATTCCGTCCCTACCCGCCGCCAATC
ACGGCGAAACCTCTGGGAAACCCTGTGATGTCTCGAGAACGGCCGCGGCC
GCTGCAGTCGCCGCCGGGGCCGTCGCCGCCACGAAGGCGTACGGCATTCG
CGAGAAGCTCGAAGAAGAAGAAGACACCGGTGGGGGTGCTGACCCCGCCC
TGTCCCCTCGCGGTGCGCCTCCTCCCGCGCCTTTCGGGGGCATGCTTTCT
GGCTTCGGGTGTATGGCGCCCCAGCTTTCTCCGGGGAAGGGGGCCGCGCG
TCTGTCGCCGAGGGCCGGCAGCCGTCTGCCAGAGATCGACGACGATGACG
ATGAGAGCAGCTTGGCCGAGGAGGAGGAGATGGAGGAAAACGAGGAAGTC
GCCGGGAGACGTGCGCCTGGGAGTTGCTCGCCCCTTTCGCGGCCGCCGCT
CAACTCCGGGCCTGACGACGGCCGCGGCGAGCGTGTCGGCCAGGGGGAAG
GATCGGCGTCCGCGGTGTCCCTCGAGACGGCGCTCGCTCTGTCTCGCTCG
CGCACGATGACCCCCGAACTCAAGCCGATCGCCGAGATGGCGGACAGCGG
GTCCTTCACCGATTCGGAGGCCGGCAGCGACGTTAGCTCGTGCTTGTCGT
CCATGAGCGGCAGGAGCGGGTACCGGGTCCCCCGCGACCCAGCCGCTCTC
CTCGCGGCGGCGATGGAGAAGGCCGGCCAGGTAGCGGCGATCCCCCCGCC
GTCCTCCGGGAGCCACGGCAGGCCTCTCAGCTCGGTGCAAGAGGTCCCGA
TGGAAGGCGTCCCGCTGCCCGGGCTTGCTACCCCCGAGTTTGACGATGAG
TGCGGCCTCAAGGTCCACTGCAGTACCTGGGATTCCGGGAGCACGACCGC
CTCGACGGTGTCCCCCTTGAGGGCGGCGGTCTCTACGGTAGAGGTTGACA
CGACGGTTGTGCCGATACCGTCGCCGGCTCAGCGTCCCGAGAGCAGCGAT
GAGTCCGGCGAGGCGACGGAGGAAGAGGAGGAGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1087:23602..24686+

>mRNA_E-siliculosus-1a_F_contig1087.594.1 ID=mRNA_E-siliculosus-1a_F_contig1087.594.1|Name=mRNA_E-siliculosus-1a_F_contig1087.594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2166bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1087:23602..24686+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGGCGGCTCTGGCAAGAGCGTTGTCGCTGACAAGAGCGGCGACAGCAT
CGTGTCCGACGAAGGGCCTCCGGGGATTCCGTCCCTACCCGCCGCCAATC
ACGGCGAAACCTCTGGGAAACCCTGTGATGTCTCGAGAACGGCCGCGGCC
GCTGCAGTCGCCGCCGGGGCCGTCGCCGCCACGAAGGCGTACGGCATTCG
CGAGAAGCTCGAAGAAGAAGAAGACACCGGTGGGGGTGCTGACCCCGCCC
TGTCCCCTCGCGGTGCGCCTCCTCCCGCGCCTTTCGGGGGCATGCTTTCT
GGCTTCGGGTGTATGGCGCCCCAGCTTTCTCCGGGGAAGGGGGCCGCGCG
TCTGTCGCCGAGGGCCGGCAGCCGTCTGCCAGAGATCGACGACGATGACG
ATGAGAGCAGCTTGGCCGAGGAGGAGGAGATGGAGGAAAACGAGGAAGTC
GCCGGGAGACGTGCGCCTGGGAGTTGCTCGCCCCTTTCGCGGCCGCCGCT
CAACTCCGGGCCTGACGACGGCCGCGGCGAGCGTGTCGGCCAGGGGGAAG
GATCGGCGTCCGCGGTGTCCCTCGAGACGGCGCTCGCTCTGTCTCGCTCG
CGCACGATGACCCCCGAACTCAAGCCGATCGCCGAGATGGCGGACAGCGG
GTCCTTCACCGATTCGGAGGCCGGCAGCGACGTTAGCTCGTGCTTGTCGT
CCATGAGCGGCAGGAGCGGGTACCGGGTCCCCCGCGACCCAGCCGCTCTC
CTCGCGGCGGCGATGGAGAAGGCCGGCCAGGTAGCGGCGATCCCCCCGCC
GTCCTCCGGGAGCCACGGCAGGCCTCTCAGCTCGGTGCAAGAGGTCCCGA
TGGAAGGCGTCCCGCTGCCCGGGCTTGCTACCCCCGAGTTTGACGATGAG
TGCGGCCTCAAGGTCCACTGCAGTACCTGGGATTCCGGGAGCACGACCGC
CTCGACGGTGTCCCCCTTGAGGGCGGCGGTCTCTACGGTAGAGGTTGACA
CGACGGTTGTGCCGATACCGTCGCCGGCTCAGCGTCCCGAGAGCAGCGAT
GAGTCCGGCGAGGCGACGGAGGAAGAGGAGGAGGGCGGCGGCTCTGGCAA
GAGCGTTGTCGCTGACAAGAGCGGCGACAGCATCGTGTCCGACGAAGGGC
CTCCGGGGATTCCGTCCCTACCCGCCGCCAATCACGGCGAAACCTCTGGG
AAACCCTGTGATGTCTCGAGAACGGCCGCGGCCGCTGCAGTCGCCGCCGG
GGCCGTCGCCGCCACGAAGGCGTACGGCATTCGCGAGAAGCTCGAAGAAG
AAGAAGACACCGGTGGGGGTGCTGACCCCGCCCTGTCCCCTCGCGGTGCG
CCTCCTCCCGCGCCTTTCGGGGGCATGCTTTCTGGCTTCGGGTGTATGGC
GCCCCAGCTTTCTCCGGGGAAGGGGGCCGCGCGTCTGTCGCCGAGGGCCG
GCAGCCGTCTGCCAGAGATCGACGACGATGACGATGAGAGCAGCTTGGCC
GAGGAGGAGGAGATGGAGGAAAACGAGGAAGTCGCCGGGAGACGTGCGCC
TGGGAGTTGCTCGCCCCTTTCGCGGCCGCCGCTCAACTCCGGGCCTGACG
ACGGCCGCGGCGAGCGTGTCGGCCAGGGGGAAGGATCGGCGTCCGCGGTG
TCCCTCGAGACGGCGCTCGCTCTGTCTCGCTCGCGCACGATGACCCCCGA
ACTCAAGCCGATCGCCGAGATGGCGGACAGCGGGTCCTTCACCGATTCGG
AGGCCGGCAGCGACGTTAGCTCGTGCTTGTCGTCCATGAGCGGCAGGAGC
GGGTACCGGGTCCCCCGCGACCCAGCCGCTCTCCTCGCGGCGGCGATGGA
GAAGGCCGGCCAGGTAGCGGCGATCCCCCCGCCGTCCTCCGGGAGCCACG
GCAGGCCTCTCAGCTCGGTGCAAGAGGTCCCGATGGAAGGCGTCCCGCTG
CCCGGGCTTGCTACCCCCGAGTTTGACGATGAGTGCGGCCTCAAGGTCCA
CTGCAGTACCTGGGATTCCGGGAGCACGACCGCCTCGACGGTGTCCCCCT
TGAGGGCGGCGGTCTCTACGGTAGAGGTTGACACGACGGTTGTGCCGATA
CCGTCGCCGGCTCAGCGTCCCGAGAGCAGCGATGAGTCCGGCGAGGCGAC
GGAGGAAGAGGAGGAG
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