mRNA_E-siliculosus-1a_F_contig10826.576.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10826.576.1
Unique NamemRNA_E-siliculosus-1a_F_contig10826.576.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10826.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10826contigE-siliculosus-1a_F_contig10826:97..1551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size447
Model size848
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10826.576.1prot_E-siliculosus-1a_F_contig10826.576.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10826 120..1173 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927584.3324866-UTR-E-siliculosus-1a_F_contig10826:96..1191622927584.3324866-UTR-E-siliculosus-1a_F_contig10826:96..119Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10826 97..119 +
1696318597.9405446-UTR-E-siliculosus-1a_F_contig10826:96..1191696318597.9405446-UTR-E-siliculosus-1a_F_contig10826:96..119Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10826 97..119 +
1622927584.3651369-UTR-E-siliculosus-1a_F_contig10826:1173..15511622927584.3651369-UTR-E-siliculosus-1a_F_contig10826:1173..1551Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10826 1174..1551 +
1696318597.9632738-UTR-E-siliculosus-1a_F_contig10826:1173..15511696318597.9632738-UTR-E-siliculosus-1a_F_contig10826:1173..1551Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10826 1174..1551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927584.344851-CDS-E-siliculosus-1a_F_contig10826:119..2331622927584.344851-CDS-E-siliculosus-1a_F_contig10826:119..233Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10826 120..233 +
1696318597.9478114-CDS-E-siliculosus-1a_F_contig10826:119..2331696318597.9478114-CDS-E-siliculosus-1a_F_contig10826:119..233Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10826 120..233 +
1622927584.3553002-CDS-E-siliculosus-1a_F_contig10826:840..11731622927584.3553002-CDS-E-siliculosus-1a_F_contig10826:840..1173Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10826 841..1173 +
1696318597.9556296-CDS-E-siliculosus-1a_F_contig10826:840..11731696318597.9556296-CDS-E-siliculosus-1a_F_contig10826:840..1173Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10826 841..1173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10826.576.1

>prot_E-siliculosus-1a_F_contig10826.576.1 ID=prot_E-siliculosus-1a_F_contig10826.576.1|Name=mRNA_E-siliculosus-1a_F_contig10826.576.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
MQEKHRGAGDQVGPTKATVTPQATEEEKRVMMPLSGGEVAFVAGVTGSSG
SGWGAYKALAEPIATVRVGMWLPLRSTCETSLKMGLLAELEIVSNCFALD
YEWYRTVRAIVRFLLALRGCFVSRPVTSNRHEAPPPYMFSVRMPATCD*
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mRNA from alignment at E-siliculosus-1a_F_contig10826:97..1551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10826.576.1 ID=mRNA_E-siliculosus-1a_F_contig10826.576.1|Name=mRNA_E-siliculosus-1a_F_contig10826.576.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1455bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10826:97..1551+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGGACTCCTGCGACGCATGGCATGCAGGAGAAGCACCGTGGGGCAGGC
GATCAAGTGGGCCCGACGAAGGCTACCGTTACGCCCCAAGCCACTGAGGA
GGAGAAACGGGTCATGATGCCCCTCTCCGGTGGCGAGGTAAGAGAAGGGT
CGGTATGGTGCGGGTCCTCTCAAAATTGGTCCAATCCTCTGCCTAACCAG
GGTAGTAGCCCAAAGGCGTAGCGACAGCCGCAGCACGCAGCATCTACGGA
CAATCTCCGCGGTCCATCACCGGCACACGCGCCGTACCACATCCAATTTT
ATTTTCCAGACCAACTCCCAACACATGCAGGTCTTCGGCCGTAGTTCTGC
AATGTGCGGCTGAAACACGTCATTTTCCCCGTAGACTGATTTTCACGGCT
CGATATTCCACGTCATATCAAACAACTTTTCTTTTCGCGACATACGCAGA
ACTTGGCCTAGTTTTTCAAAATGGGCAGCGTTGAGTTGTTGACGAGCGCC
CTTCTACTGTTTACCACCATCGTGGTTTGTATGCATACCCGCTGGTTCAC
AACTGGCGTCGCCCCCTGGCGCTGATTCCACGCTCCACACTTGCCTCAGG
GCCATCCCATCTCCATGAAATCGTAGGCAACGGCCAGTTCTTGGTCACAA
AACTCTGCATGACATGATGCTATTCTCGCCACCTCCCTGCCTTTTTCACC
TGCCCAACTCCGACACCCACACCCACACCCACACCCACACCCAGGTAGCG
TTCGTGGCTGGAGTGACGGGCTCGTCCGGCTCAGGGTGGGGTGCCTACAA
GGCTTTGGCGGAACCAATCGCGACGGTGAGAGTGGGCATGTGGCTGCCGT
TGCGGAGCACCTGCGAGACGTCGCTCAAGATGGGTTTGTTGGCCGAGTTG
GAGATCGTGTCTAATTGTTTTGCGCTTGATTACGAATGGTACAGGACCGT
GCGTGCTATTGTACGATTTCTTCTCGCTCTTCGGGGTTGTTTTGTTAGCC
GACCCGTGACAAGCAACCGTCATGAGGCGCCCCCTCCGTATATGTTCAGC
GTACGCATGCCCGCTACGTGTGACTAGGGCTGGTCCGACGCATTGCCGCT
CAACACTCCCTCAAATACATCGATATTCCTGCACCCCTATGCCGTCTACA
CCAAATTGGGACCACGACGCGCAACCCACGCAATGACAAGGCGTTTGTTT
TTGCCGAGAAGCCGTGCCCGCCTTGATGGAACAACTCTACCCCTTCATCA
TGTTCTAGCCCACCATCGAGGATAGTCGTGTCTTGCTCGACCACCGCCGA
CTCGTCAACAATCCAGCAAAGTGCATCAGACGTGCAGCCGTGGTGTTTTA
ATGCATCACACGTGTCCCCCCGCCTCCCTCTCATGTCTCCGCAGAGTCCC
GGGTTCTCCCGACTCGGCAGGGCCCTGGACTTCGTGGTCATCATTGCGAC
AGCGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10826:97..1551+

>mRNA_E-siliculosus-1a_F_contig10826.576.1 ID=mRNA_E-siliculosus-1a_F_contig10826.576.1|Name=mRNA_E-siliculosus-1a_F_contig10826.576.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10826:97..1551+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGAGAAGCACCGTGGGGCAGGCGATCAAGTGGGCCCGACGAAGGC
TACCGTTACGCCCCAAGCCACTGAGGAGGAGAAACGGGTCATGATGCCCC
TCTCCGGTGGCGAGATGCAGGAGAAGCACCGTGGGGCAGGCGATCAAGTG
GGCCCGACGAAGGCTACCGTTACGCCCCAAGCCACTGAGGAGGAGAAACG
GGTCATGATGCCCCTCTCCGGTGGCGAGGTAGCGTTCGTGGCTGGAGTGA
CGGGCTCGTCCGGCTCAGGGTGGGGTGCCTACAAGGCTTTGGCGGAACCA
ATCGCGACGGTGAGAGTGGGCATGTGGCTGCCGTTGCGGAGCACCTGCGA
GACGTCGCTCAAGATGGGTTTGTTGGCCGAGTTGGAGATCGTGTCTAATT
GTTTTGCGCTTGATTACGAATGGTACAGGACCGTGCGTGCTATTGTACGA
TTTCTTCTCGCTCTTCGGGGTTGTTTTGTTAGCCGACCCGTGACAAGCAA
CCGTCATGAGGCGCCCCCTCCGTATATGTTCAGCGTACGCATGCCCGCTA
CGTGTGACTAGGTAGCGTTCGTGGCTGGAGTGACGGGCTCGTCCGGCTCA
GGGTGGGGTGCCTACAAGGCTTTGGCGGAACCAATCGCGACGGTGAGAGT
GGGCATGTGGCTGCCGTTGCGGAGCACCTGCGAGACGTCGCTCAAGATGG
GTTTGTTGGCCGAGTTGGAGATCGTGTCTAATTGTTTTGCGCTTGATTAC
GAATGGTACAGGACCGTGCGTGCTATTGTACGATTTCTTCTCGCTCTTCG
GGGTTGTTTTGTTAGCCGACCCGTGACAAGCAACCGTCATGAGGCGCCCC
CTCCGTATATGTTCAGCGTACGCATGCCCGCTACGTGTGACTAG
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