mRNA_E-siliculosus-1a_F_contig1079.550.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: D7FU67_ECTSI (Glucose-6-phosphate isomerase, cytosolic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU67_ECTSI) HSP 1 Score: 538 bits (1385), Expect = 4.720e-192 Identity = 291/308 (94.48%), Postives = 294/308 (95.45%), Query Frame = 1 Query: 1 MGFGHQRDGNSLFGWGGSSS-WGGWATGXXXXXXXXXXXXXXX-------DDRRMGWTNREWRKFTAGLRGHTDDYDKIWSSWVPFKVDTSGLQEVLKTKTSDLAIKTLAKLQTMAGQEDQAEETLLKLIRDPYNLGDVSWLAKSAAETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDDPPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHEAS 900 MGFGHQRDGNSLFGWGGSSS WG WATG XXXXXXXXXXX DDRRMGWTN+EW+KFTAGLRGHTDDYDKIWSSWVPFKVDTSGLQEVLKTKTSDLAIKTLAKLQTMAGQEDQAEETLLKLIRDPYNLGDVSWLAKSAAETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDDPPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHE + Sbjct: 1 MGFGHQRDGNSLFGWGGSSSSWGEWATGGTEGXXXXXXXXXXXXXXXXXPDDRRMGWTNKEWKKFTAGLRGHTDDYDKIWSSWVPFKVDTSGLQEVLKTKTSDLAIKTLAKLQTMAGQEDQAEETLLKLIRDPYNLGDVSWLAKSAAETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDDPPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHEVA 308
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: A0A836CFZ0_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ0_9STRA) HSP 1 Score: 203 bits (516), Expect = 2.210e-57 Identity = 113/181 (62.43%), Postives = 133/181 (73.48%), Query Frame = 1 Query: 355 LKLIRDPYNLGDVSWLAKSAAETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDDPPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHEA 897 ++ IRD Y+LG + KS TAEWRRL VH + I HL+DV+ + R ALSAEFEG+ LDYSRM V+Q TM LL LA+RQ L ++I AM G+K+N TE RAVLH ALRS DD PI VD V+V++ VH+ L KVK FSE VRSGE RGATG+ L NIVAVGIGGSYLGPEFVHEA Sbjct: 3 MESIRDTYSLG-LKPQPKSVTATAEWRRLKVHARHIAKMHLRDVLGVASRCEALSAEFEGSFLDYSRMQVTQRTMDLLYALARRQRLREKIAAMCRGDKVNVTEGRAVLHTALRSAPDDAPIVVDGVNVVEDVHEVLRKVKAFSEAVRSGEQRGATGRLLRNIVAVGIGGSYLGPEFVHEA 182
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: A0A836C893_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C893_9STRA) HSP 1 Score: 205 bits (521), Expect = 2.660e-57 Identity = 116/181 (64.09%), Postives = 133/181 (73.48%), Query Frame = 1 Query: 355 LKLIRDPYNLGDVSWLAKSAAETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDDPPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHEA 897 ++ IRD Y+LG + KS + TAEWRRL H + IK HL+DVM R ALSAEFEG+ LDYSRM V+Q TM LL LA+RQNL +I AM G+KIN TE RAVLH LRS DD PI VD V+V+++VH L+KVK FSE VRSGE RGATGK L NIVAVGIGGSYLGPEFVHEA Sbjct: 3 MESIRDSYSLG-MKPQPKSVSATAEWRRLKAHARHIKRMHLRDVMGDAARCEALSAEFEGSFLDYSRMQVTQRTMDLLYALARRQNLKLKIEAMCRGDKINTTEGRAVLHTVLRSAPDDAPIVVDGVNVVEEVHAVLNKVKAFSEAVRSGEQRGATGKLLRNIVAVGIGGSYLGPEFVHEA 182
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: A0A2P6V0L1_9CHLO (Glucose-6-phosphate isomerase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L1_9CHLO) HSP 1 Score: 166 bits (420), Expect = 2.110e-43 Identity = 88/161 (54.66%), Postives = 117/161 (72.67%), Query Frame = 1 Query: 415 AETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDDPPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHEA 897 A T EW L H K I++ HL+D++ E+R+ L E G +D+SR N++++TM+LLL+LA+R L ++ AMF GE INNTE+RAVLH ALR RD+ +YVD +V+ V + LDK+KDFSERVRSGE GATGK L ++VA+GIGGSYLGP F+H A Sbjct: 31 AYTPEWNALREHTKEIESLHLRDLLLDEERTDNLIREHNGLYVDFSRQNITEVTMQLLLNLAERAKLRSKMNAMFAGEHINNTEDRAVLHAALRMPRDEA-VYVDGANVVPDVWEVLDKIKDFSERVRSGEWLGATGKPLTDVVAIGIGGSYLGPLFIHNA 190
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: A0A1Z5JRC9_FISSO (Glucose-6-phosphate isomerase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRC9_FISSO) HSP 1 Score: 167 bits (423), Expect = 3.680e-43 Identity = 98/166 (59.04%), Postives = 118/166 (71.08%), Query Frame = 1 Query: 403 AKSAAETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDD-PPIYVD-DVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHE 894 A + TAEW+RL H + I+ HL+ +M RS AL A +G LDYSR V+ TMKLL DLAKRQ+L +I AMF G+KIN TE+RAVLH ALR+ R + VD DVD IQ+VHD LD++K F+ VRSG+LRG TGK L NIV+VGIGGSYLGPEFVHE Sbjct: 193 ATLVSRTAEWKRLQKHAEYIQTTHLRQLMQDAVRSEALYATHDGVYLDYSRQRVTVETMKLLGDLAKRQDLRGKIEAMFRGDKINFTEDRAVLHTALRASRSKIGTVLVDEDVDAIQEVHDVLDQIKVFTNGVRSGQLRGYTGKRLRNIVSVGIGGSYLGPEFVHE 358
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: A0A2P6V0P9_9CHLO (Glucose-6-phosphate isomerase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0P9_9CHLO) HSP 1 Score: 166 bits (420), Expect = 1.520e-42 Identity = 88/161 (54.66%), Postives = 117/161 (72.67%), Query Frame = 1 Query: 415 AETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDDPPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHEA 897 A T EW L H K I++ HL+D++ E+R+ L E G +D+SR N++++TM+LLL+LA+R L ++ AMF GE INNTE+RAVLH ALR RD+ +YVD +V+ V + LDK+KDFSERVRSGE GATGK L ++VA+GIGGSYLGP F+H A Sbjct: 436 AYTPEWNALREHTKEIESLHLRDLLLDEERTDNLIREHNGLYVDFSRQNITEVTMQLLLNLAERAKLRSKMNAMFAGEHINNTEDRAVLHAALRMPRDEA-VYVDGANVVPDVWEVLDKIKDFSERVRSGEWLGATGKPLTDVVAIGIGGSYLGPLFIHNA 595
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: A0A7S2M9T3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M9T3_9STRA) HSP 1 Score: 157 bits (397), Expect = 1.640e-42 Identity = 87/162 (53.70%), Postives = 114/162 (70.37%), Query Frame = 1 Query: 415 AETAEWRRLVVHQKR-IKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDD-PPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHE 894 + T EWR+L H + IK+ HL++++ R A+ AE +G DYSR V+ TM LL DLA++Q L KRI AM GEKIN TE+RAVLH ALR+ +D ++VDD D I++VHD LD++K F+E RSG + G TGK + NIV+VGIGGSYLGPEF+HE Sbjct: 128 SSTQEWRKLQRHAAQTIKSTHLRELLQDPVRCDAMFAEHDGVYFDYSRQQVTLETMDLLFDLAEKQELTKRIQAMVNGEKINFTEDRAVLHTALRASKDKIGTVFVDDEDAIKEVHDVLDQIKQFTEAFRSGHITGYTGKRMRNIVSVGIGGSYLGPEFLHE 289
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: A0A7J7IM63_9RHOD (Glucose-6-phosphate isomerase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM63_9RHOD) HSP 1 Score: 164 bits (415), Expect = 1.740e-42 Identity = 91/161 (56.52%), Postives = 115/161 (71.43%), Query Frame = 1 Query: 415 AETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDDPPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHEA 897 +ETAEW+ L H + IK HL+++M +R +L AEF+G LDYSR V++ TM+LL DLA+R L +I AM G IN TE RAVLH ALR+ R + VD VDVI++V + LD V+DFSERVR+G RG TGK L N++AVGIGGSYLGP+FVHEA Sbjct: 79 SETAEWKGLEAHSEEIKRLHLRELMRDAERVRSLRAEFDGIYLDYSRQRVNRQTMQLLFDLARRTRLTDKIRAMQSGAHINATEGRAVLHTALRADRR-ATLVVDGVDVIREVWEVLDHVRDFSERVRNGIHRGVTGKPLRNVIAVGIGGSYLGPDFVHEA 238
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: A0A7S2YCA4_9STRA (Glucose-6-phosphate isomerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCA4_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.790e-42 Identity = 87/164 (53.05%), Postives = 119/164 (72.56%), Query Frame = 1 Query: 406 KSAAETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRDD-PPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHE 894 K +E +EW+RL H + +K +HL+D++ E R ++ A +G LDYSR V+ TMK L LA++Q+L +I M G+KIN TE RAVLH ALR+ R++ + VD +DVI++VH+ LD++K+F+E VRSGELRG TGK L NIV+VGIGGSYLGPEF+HE Sbjct: 225 KLVSECSEWKRLQKHAEYMKTQHLRDLLTDEARCNSMYATADGIYLDYSRQRVTPDTMKFLYALAEKQDLEGQIKGMMRGDKINFTEKRAVLHTALRAEREEIGSVIVDGMDVIEEVHEVLDQIKEFTEGVRSGELRGYTGKRLRNIVSVGIGGSYLGPEFLHE 388
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Match: A0A7S3KVV6_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KVV6_9STRA) HSP 1 Score: 164 bits (415), Expect = 6.380e-42 Identity = 88/164 (53.66%), Postives = 121/164 (73.78%), Query Frame = 1 Query: 406 KSAAETAEWRRLVVHQKRIKNKHLKDVMALEDRSLALSAEFEGTILDYSRMNVSQLTMKLLLDLAKRQNLNKRITAMFEGEKINNTENRAVLHVALRSHRD-DPPIYVDDVDVIQQVHDTLDKVKDFSERVRSGELRGATGKNLVNIVAVGIGGSYLGPEFVHE 894 K +E ++WRRL H + I+ +HL+D + E R + A +G LDYSR V+ TMK L +LA++Q+L +I AM +GEKIN TE+RAVLH ALR+ R+ + + VD +DVI++VH+ LD++K+F+E VRSG+LRG TGK L NIV+VGIGGSYLGPEF+HE Sbjct: 308 KLVSECSQWRRLAKHAEYIQTQHLRDFLQDEARCEGMYATHDGVYLDYSRNQVTLETMKFLYELAEKQDLKGKIDAMVKGEKINFTEDRAVLHTALRAERELEGTVMVDGMDVIKEVHEVLDQIKEFTEGVRSGKLRGYTGKRLRNIVSVGIGGSYLGPEFLHE 471 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1079.550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1079.550.1 >prot_E-siliculosus-1a_F_contig1079.550.1 ID=prot_E-siliculosus-1a_F_contig1079.550.1|Name=mRNA_E-siliculosus-1a_F_contig1079.550.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=300bp MGFGHQRDGNSLFGWGGSSSWGGWATGGTEGGGGGGGGGGGPDDRRMGWTback to top mRNA from alignment at E-siliculosus-1a_F_contig1079:1078..5776- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1079.550.1 ID=mRNA_E-siliculosus-1a_F_contig1079.550.1|Name=mRNA_E-siliculosus-1a_F_contig1079.550.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4699bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1079:1078..5776- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1079:1078..5776- >mRNA_E-siliculosus-1a_F_contig1079.550.1 ID=mRNA_E-siliculosus-1a_F_contig1079.550.1|Name=mRNA_E-siliculosus-1a_F_contig1079.550.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1800bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1079:1078..5776- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |