mRNA_E-siliculosus-1a_F_contig1075.528.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: D7G1Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Z5_ECTSI) HSP 1 Score: 766 bits (1979), Expect = 5.140e-264 Identity = 574/649 (88.44%), Postives = 578/649 (89.06%), Query Frame = 1 Query: 1 MVEPSSAPRDLDSAGAAAAASRSDLTFRRRNKDNSNAGSVVXXXXXXXXXXXXXXXSRPEASGRRKDKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAASNNSKLRTPLERYLLLSVMLVAAGLGVRFLWRQLAGLVGAALILSAARRWSGAPAVRKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCFADAPAELRRFWEDGGPGCQFLVRGPKYISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQQRDGVALGEEGGSSSVPAGGGDSARHDTFLAMLARYAEVPGSGYKKLERTRSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPLTLGGVAGLEGGNGPPAAVGAAGAGAEALSKGAGSRGGGLGGAPAERNSDPAGLLPMDDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPLHRGPSSPRGRGRGR 1947
MVEPSSAPRDLDS GAAAAASRSDLT RRRNKDNSNAGSVVXXXXXXXXXXXXXXXSRPEASGRRKDKGXXXXXXXXXXXXX XXXXXXXXXXXXX KLRTPLERYLLLSVMLVAAGLGVRFLWRQLAGLVGAALILSAARRWSGAPAVRKPXXXXXXXXXX XXXXXXXXXX TCFADAPAELRRFW+DGGPGCQFLVRGPKYISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQ+RDGV LGEEG SS VPAGGGDSARHDTFLAMLARYAEVPGSGY KLERTRSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L GVAGLEGGNGPPAA GAAGAGAEALS GA SRGGGLGGAPA+RNSDPAGLLP+DDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPLHR PSSPRGRGRGR
Sbjct: 1 MVEPSSAPRDLDSTGAAAAASRSDLTLRRRNKDNSNAGSVVXXXXXXXXXXXXXXXSRPEASGRRKDKGXXXXXXXXXXXXXRTQXXXXXXXXXXXXXXXXXXX-KLRTPLERYLLLSVMLVAAGLGVRFLWRQLAGLVGAALILSAARRWSGAPAVRKPXXXXXXXXXXLGAPVSGGDQTVEATASSAADCETAGDRGXXXXXXXXXXTGRREGDVVGDGGG--TCFADAPAELRRFWKDGGPGCQFLVRGPKYISDRKKIPAGPAAMRLVHVDFFSVEGEVFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQTTQRRDGVGLGEEGVSSPVPAGGGDSARHDTFLAMLARYAEVPGSGYNKLERTRSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLA--GVAGLEGGNGPPAAEGAAGAGAEALSTGAASRGGGLGGAPADRNSDPAGLLPVDDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPLHRSPSSPRGRGRGR 644
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: A0A835ZES7_9STRA (EDR2_C domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES7_9STRA) HSP 1 Score: 147 bits (370), Expect = 8.770e-38 Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 1 Query: 1576 DDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDI 1887
DDFRN+RFKLIPS+V GPF+VR AVGNKPALLGRK++QRY+RG YVETDVDV SS +A IVS+CRG + L+V+LGI LEGR ELPE +GV+RL +D+
Sbjct: 1 DDFRNERFKLIPSIVEGPFLVRGAVGNKPALLGRKLTQRYYRGAHYVETDVDVASSSVAAHIVSMCRGASNGLSVDLGIVLEGRARAELPERCLGVVRLNRLDL 104
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: A0A7S2CMY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMY1_9STRA) HSP 1 Score: 156 bits (395), Expect = 8.850e-37 Identity = 74/125 (59.20%), Postives = 96/125 (76.80%), Query Frame = 1 Query: 1534 PAERNSDPAGLLPMDDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPLH 1908
P ++ AG+ P++ RNQRFKLIP++ GPF+V++AVG KPALLG+K++QRYFRG YVETDV VGSS IA ++V LCRGY KALTVE+GI LEGR + ELPE ++GV R +DI+ E L+
Sbjct: 357 PPASDTPDAGVYPLEHLRNQRFKLIPAITEGPFLVKQAVGAKPALLGQKLTQRYFRGEHYVETDVHVGSSAIANQVVGLCRGYCKALTVEIGIVLEGRSEAELPEKLIGVGRFKKIDIEAGEDLY 481
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: A0A7S3XTA9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTA9_HETAK) HSP 1 Score: 145 bits (366), Expect = 1.640e-36 Identity = 72/133 (54.14%), Postives = 97/133 (72.93%), Query Frame = 1 Query: 1549 SDPA--GLLPMDDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPLHRGPSSPRGRGR 1941
+DPA G LP D F+N RFKL+PS+V GP+I ++AV NKPA+LG+K++QRYFR Y+E D+D+GSS++A+KIV LCRGYA L V++GI LEG+ ELPE ++ R+ VD+ +A PL R P G GR
Sbjct: 27 ADPADEGRLPADAFQNLRFKLVPSIVEGPWICQRAVKNKPAILGQKITQRYFRTEHYLEVDLDIGSSVVADKIVGLCRGYAVNLVVDIGITLEGQTGAELPEVLLAATRMARVDLALAAPL-RPPDEGEGGGR 158
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: D7FIG2_ECTSI (EDR2_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG2_ECTSI) HSP 1 Score: 150 bits (379), Expect = 6.570e-35 Identity = 121/432 (28.01%), Postives = 165/432 (38.19%), Query Frame = 1 Query: 715 WEDGGPGCQFLVRGPKYISDRKKIPAGPAAMRLVHVDFFSVEGE----VFHVASKGRCRDRVSAFLKSYEDKGEAAPFLFILNILVPGNPVVATVMYLALDQT----------------------------------TQQRDGVALGEEGGSSSV-PAGGGD-SARHDTFLAMLARYAEVPGSGYKKLERTRSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPLTLGGVAGLEGGNGPPAAVGAAGAGAEALSKGAGSRGGGLGGAPAERNSDPAGLLPMDDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDID 1890
W+D FLVRGP Y+ D+ K+PAG A RLV D F+ + + H+AS+G CR+RV A G+ APFLFI+NI V G P V+ V Y A+D+ T+ G ++GE G + P G GD S R F ++A YA++P S + G A+ D A P D RN RFKLIP V+ GP++VRKAVG+ P LLG K++ RY+RG YVETD+D GSS A + CRG ++ + VELGI L+ +ELPE ++G +RL ++
Sbjct: 160 WKDAASIHSFLVRGPTYLQDKAKLPAGRAMCRLVGFDCFTENSKGTTRIDHIASRGTCRERVEAMTS-----GDDAPFLFIMNIQVRGTPPVSMVAYWAVDRDGLEEAKDAATAAGTLQGVPSDHIDTTEAAVDETDTENGLGQSVGESNGLTGAGPQGEGDVSGRESVFSRIVASYADIPVSTF-------------------------------------------------------------------------------------------------GGDECAM-----------------------------MDTAPPPPYSDERNTRFKLIPRVIGGPWMVRKAVGSTPVLLGTKITHRYYRGERYVETDMDTGSSPAAASLCGRCRGLSRKIDVELGIVLQANSAQELPEALLGAVRLNGFGVE 460
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: A0A7S2WM21_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WM21_9STRA) HSP 1 Score: 143 bits (360), Expect = 4.040e-33 Identity = 65/116 (56.03%), Postives = 89/116 (76.72%), Query Frame = 1 Query: 1558 AGLLPMDDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPL 1905
AGL P D FRNQRFKLIP +V GPF+VR AVG KPALLG+K++QRY+RG Y+ETDV VGS+ +A I + R Y+K++TVE+ I +EGR + ELPE ++GV++ + DI++ E +
Sbjct: 266 AGLSPSDHFRNQRFKLIPRIVDGPFLVRNAVGAKPALLGQKLTQRYYRGKNYIETDVHVGSNAVANHITGISRTYSKSVTVEIAITIEGRQEAELPEKLVGVVKFTHTDIEVGEDI 381
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: A0A835YZD8_9STRA (EDR2_C domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD8_9STRA) HSP 1 Score: 127 bits (318), Expect = 8.000e-31 Identity = 56/100 (56.00%), Postives = 79/100 (79.00%), Query Frame = 1 Query: 1585 RNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVD 1884
RN+ FKL+P V GP++V+ A G+ P LLGRK++QRYF GPGY E +DVGSS IA +IVS+C G A+ALT+++G+ LEGRCD+ELPE ++G + + ++D
Sbjct: 1 RNRCFKLLPLVREGPWVVKTATGSTPTLLGRKLTQRYFSGPGYTEVCIDVGSSAIASRIVSVCMGAARALTIDVGVTLEGRCDDELPERLLGCLTICHLD 100
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: A0A7S2FI89_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI89_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.390e-30 Identity = 58/99 (58.59%), Postives = 75/99 (75.76%), Query Frame = 1 Query: 1612 SVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPLH 1908
+++ GP+IVR AV KPAL+GRK+ QRYFRG GYVETD+ +GSS IA I LCRGYAKA+ V+L CLEGR +EELPE ++GV R + D++ E L+
Sbjct: 1 AIIEGPWIVRSAVPVKPALMGRKLKQRYFRGEGYVETDIHIGSSAIANNITGLCRGYAKAMVVDLAFCLEGRAEEELPERLIGVARYRHPDVEKYEDLY 99
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: A0A2R5GJQ0_9STRA (Protein ENHANCED DISEASE RESISTANCE 2-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJQ0_9STRA) HSP 1 Score: 139 bits (351), Expect = 2.220e-30 Identity = 68/116 (58.62%), Postives = 89/116 (76.72%), Query Frame = 1 Query: 1576 DDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPLHRGPSS 1923
++FR+QRFKLIP + GPFIVRKAVG+KPAL+G+K++QRYFR +E D+D+GSS IA +IV L GYAK LTV++ +EG+ EELPE V+G+IR V+VD A PL + PSS
Sbjct: 533 NEFRDQRFKLIPRINEGPFIVRKAVGSKPALVGKKLTQRYFRAKNVLELDLDIGSSSIAHRIVQLSIGYAKLLTVDMAFVIEGQDAEELPEQVIGLIRAVHVDFSKAVPLRKVPSS 648
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Match: D0NDN7_PHYIT (EDR2_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0NDN7_PHYIT) HSP 1 Score: 132 bits (331), Expect = 1.660e-29 Identity = 60/110 (54.55%), Postives = 82/110 (74.55%), Query Frame = 1 Query: 1576 DDFRNQRFKLIPSVVSGPFIVRKAVGNKPALLGRKVSQRYFRGPGYVETDVDVGSSMIAEKIVSLCRGYAKALTVELGICLEGRCDEELPETVMGVIRLVNVDIDMAEPL 1905
D+FRN+RFKLIP +V G FIVR+AVG+ PAL+G+K+ Q YFRG Y E DVD+GSS +A ++V L GY K L +++G LEG+ EELPE + G RLV++D+ +A+ L
Sbjct: 255 DEFRNERFKLIPCIVEGSFIVRQAVGSTPALIGKKLRQPYFRGKQYFELDVDIGSSAVANRVVGLVSGYTKKLVIDMGFVLEGQNPEELPERLFGTCRLVHIDLSVAKKL 364 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1075.528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1075.528.1 >prot_E-siliculosus-1a_F_contig1075.528.1 ID=prot_E-siliculosus-1a_F_contig1075.528.1|Name=mRNA_E-siliculosus-1a_F_contig1075.528.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=650bp MVEPSSAPRDLDSAGAAAAASRSDLTFRRRNKDNSNAGSVVEPSPAPRGLback to top mRNA from alignment at E-siliculosus-1a_F_contig1075:13509..20544+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1075.528.1 ID=mRNA_E-siliculosus-1a_F_contig1075.528.1|Name=mRNA_E-siliculosus-1a_F_contig1075.528.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7036bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1075:13509..20544+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1075:13509..20544+ >mRNA_E-siliculosus-1a_F_contig1075.528.1 ID=mRNA_E-siliculosus-1a_F_contig1075.528.1|Name=mRNA_E-siliculosus-1a_F_contig1075.528.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1075:13509..20544+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |