mRNA_E-siliculosus-1a_F_contig1075.526.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1075.526.1
Unique NamemRNA_E-siliculosus-1a_F_contig1075.526.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1075.526.1 vs. uniprot
Match: D7G1Z3_ECTSI (Catabolite repression protein creC n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z3_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 4.010e-96
Identity = 291/309 (94.17%), Postives = 292/309 (94.50%), Query Frame = 1 
Query:  103 YVYPALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPLQMDGADFGREKGDDSGSGGTSAAMDGQQEEAGTASPPLESSSLRSSPSYRGKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGLSVVGVAPSSGGGNKNDPSSRGGKNANAAVVSPLQPAALDALINTEILTPRADGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFSALSAANAKGRDPSELKGRKTASP 1029
            YVYPALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPLQMDGADFGR KGDDSGSGGTSAAMDGQQEEAGTASP LESSSLRSSPSYRGK V     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ATAAGLSVVGV PSSGGG+KNDPSSRGGKNANAAVVSPLQPAALDALINTEILTPRADG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GFSALSAANAKGRDPSELKGRK ASP
Sbjct:  852 YVYPALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPLQMDGADFGRGKGDDSGSGGTSAAMDGQQEEAGTASPSLESSSLRSSPSYRGKTVAASVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAE-ATAAGLSVVGVDPSSGGGSKNDPSSRGGKNANAAVVSPLQPAALDALINTEILTPRADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFSALSAANAKGRDPSELKGRKAASP 1159
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BLAST of mRNA_E-siliculosus-1a_F_contig1075.526.1 vs. uniprot
Match: A0A6H5L471_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L471_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 3.530e-94
Identity = 275/319 (86.21%), Postives = 282/319 (88.40%), Query Frame = 1 
Query:   97 AGYVYPALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPLQMDGADFGREKGDDSGSGGTSAAMDGQQEEAGTASPPLESSSLRSSPSYRGKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGLSVVGVAPSSGGGNKNDPSSRGGKNANAAVVSPLQPAALDALINTEILTPRADGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---GFSALSAANAKGRDPSELKGRKTASPPDTRG 1044
            AG+VYPALSRQ TPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCA+GLLKLWARPTMPPPLPPLQ+DGADFGR+KGD+SGSGGTSAAM+ QQEEAGTASP LESSSLRSSPSYRGKAV     XXXXXXXXXXXXXXXXXXXXX                     TAAGLSVVGV PSSGGGNKNDPSSR G+NANAAVVSPLQPAALDALINTEILTPRADG GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GFSALSAANAKGRDPSELKGRK ASPPDTRG
Sbjct:  988 AGHVYPALSRQLTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCADGLLKLWARPTMPPPLPPLQVDGADFGRKKGDNSGSGGTSAAMESQQEEAGTASPSLESSSLRSSPSYRGKAVAASVGXXXXXXXXXXXXXXXXXXXXXPGASASAGAVTTMAVNEP---TAAGLSVVGVDPSSGGGNKNDPSSRVGRNANAAVVSPLQPAALDALINTEILTPRADGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFSALSAANAKGRDPSELKGRKAASPPDTRG 1303
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BLAST of mRNA_E-siliculosus-1a_F_contig1075.526.1 vs. uniprot
Match: A0A836CCN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCN0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.520e-14
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   82 ESGGGAGYVYPA------LSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPP 282
            E+G GAG   P       L    TP G PLCCK+LA++PL+QV V+R G+VTLC EGLLK+W RP +PPP PP
Sbjct:  777 EAGEGAGGTAPESKFNPPLKITETPTGTPLCCKQLARLPLTQVAVLRCGIVTLCEEGLLKVWQRPVIPPPQPP 849
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1075.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1Z3_ECTSI4.010e-9694.17Catabolite repression protein creC n=1 Tax=Ectocar... [more]
A0A6H5L471_9PHAE3.530e-9486.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCN0_9STRA3.520e-1456.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1075contigE-siliculosus-1a_F_contig1075:1510..3185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1125
Model size1128
Exons2
Ec32 orthologEc-07_003600.1
Ec32 ortholog descriptionWD40 repeat
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.KLT
EggNOG OGsCOG2319@1,KOG2394@2759
EggNOG free text desc.carbon catabolite repression
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016579,GO:0019219,GO:0019222,GO:0019538,GO:0030428,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032153,GO:0032991,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045013,GO:0045892,GO:0045934,GO:0045990,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051286,GO:0051716,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0070646,GO:0070647,GO:0070887,GO:0071496,GO:0071704,GO:0080090,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
KEGG koko:K03115
Preferred namecreC
Seed eggNOG ortholog2880.D7G1Z3
Seed ortholog evalue3.3e-86
Seed ortholog score325.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.6269214-CDS-E-siliculosus-1a_F_contig1075:1509..18271622927575.6269214-CDS-E-siliculosus-1a_F_contig1075:1509..1827Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1075 1510..1827 +
1696318593.7696757-CDS-E-siliculosus-1a_F_contig1075:1509..18271696318593.7696757-CDS-E-siliculosus-1a_F_contig1075:1509..1827Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1075 1510..1827 +
1622927575.637879-CDS-E-siliculosus-1a_F_contig1075:2377..31841622927575.637879-CDS-E-siliculosus-1a_F_contig1075:2377..3184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1075 2378..3184 +
1696318593.7822933-CDS-E-siliculosus-1a_F_contig1075:2377..31841696318593.7822933-CDS-E-siliculosus-1a_F_contig1075:2377..3184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1075 2378..3184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1075.526.1prot_E-siliculosus-1a_F_contig1075.526.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1075 1510..3184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1075.526.1

>prot_E-siliculosus-1a_F_contig1075.526.1 ID=prot_E-siliculosus-1a_F_contig1075.526.1|Name=mRNA_E-siliculosus-1a_F_contig1075.526.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=375bp
KGGGGAGAAQGKAAEEEEGRGKEDEGRESGGGAGYVYPALSRQSTPRGEP
LCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPLQMDGA
DFGREKGDDSGSGGTSAAMDGQQEEAGTASPPLESSSLRSSPSYRGKAVA
ASVGGGSGGGTAAAPAAAVRNATSSSAPGASTSAGAASTTTAVAEATAAG
LSVVGVAPSSGGGNKNDPSSRGGKNANAAVVSPLQPAALDALINTEILTP
RADGSGGGGGGATGTGGPSNGKKKGFFAKVIFSKSAAGRNGGGGGGTGGG
GGSGAGSRQYNNNDDSGGFSALSAANAKGRDPSELKGRKTASPPDTRGGS
SAVAASAGGEATGSAAAASGRGTRG
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mRNA from alignment at E-siliculosus-1a_F_contig1075:1510..3185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1075.526.1 ID=mRNA_E-siliculosus-1a_F_contig1075.526.1|Name=mRNA_E-siliculosus-1a_F_contig1075.526.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1676bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1075:1510..3185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGGCGGCGGCGGCGCCGGGGCGGCGCAAGGAAAGGCCGCCGAAGAGGA
AGAAGGTAGAGGGAAGGAAGACGAGGGAAGAGAGAGCGGCGGCGGCGCGG
GCTACGTGTACCCGGCTCTCAGCAGGCAGTCGACCCCCCGGGGGGAGCCC
CTGTGCTGCAAGCGCCTGGCGCAGGTGCCGCTGAGCCAGGTGATGGTGGT
GAGGGCCGGGGTGGTGACGCTCTGCGCCGAGGGGTTGCTGAAGCTCTGGG
CGCGGCCGACGATGCCGCCGCCGCTGCCGCCGCTGCAGATGGACGGGGCA
GACTTTGGGAGAGAAAAGGTACACAGGCGGTGACGGAGGGGGGTATACGG
GGCATATTTATAGCCGATGGTAGTTTTGTTGACGGTGGTGAGAAGAGCCG
ATTGCGTAAGGGGTACACTGCGTCGTCTTTTTCTATTCAAAGACTTAACG
GTGAGTTGTGCTTTCCTCGGGCAGAGCAGTTAGGCCTTTCGGTATGGTCG
TTGACAAAACCTGTTGGACTAGGTCGCGACGTTTTTTTTTTCCTTCTTGA
ACCTGTTCATGCAGACAAGCAACAAAATGTGTGGACATTGATTGAGCTTG
TAGATGCGATGCGATGCGATGCGATGCGACAGATAAGCGTCGCACGTCCT
CGCTTCGGGTAGAAGCTGCGGGGAGGCGGGTCTCACTTCCCACCTTTGGC
ACTCTGTGCTGACAACGGCAGCAACCACCACCGGTTGTTGCCCCCGTCAT
ATCCGGTTAGTATACCTCGGTTCGACAAGAGCCGTGTCGTGAATGCGCCC
GACGCACGCGTCAAACTCCCTGCCCGATCCCCGCCCGCCCTGATGCTACT
TCACCTTGCCTCCCTCAGGGAGACGACAGCGGTAGCGGCGGCACGAGCGC
GGCAATGGACGGCCAGCAGGAAGAAGCAGGCACCGCGTCGCCGCCGCTCG
AGTCTTCATCCCTCCGAAGCAGCCCCTCCTACCGCGGAAAGGCCGTCGCC
GCCTCTGTTGGCGGCGGGAGCGGCGGCGGCACCGCCGCCGCCCCCGCGGC
GGCCGTCCGAAACGCCACCTCTTCTTCAGCCCCTGGCGCTAGCACTAGCG
CTGGCGCCGCAAGTACCACTACGGCGGTGGCTGAAGCAACGGCGGCCGGC
CTCTCGGTGGTCGGCGTAGCCCCGTCCTCGGGCGGGGGGAACAAGAACGA
CCCTTCTTCCCGGGGGGGCAAGAACGCCAACGCGGCGGTGGTGTCCCCCT
TGCAGCCCGCCGCCCTAGACGCGCTGATCAACACGGAGATCCTTACCCCT
CGGGCGGACGGCAGCGGCGGCGGCGGCGGGGGAGCGACGGGGACAGGCGG
GCCCTCCAACGGCAAGAAGAAGGGCTTCTTCGCCAAGGTTATCTTCTCCA
AGAGCGCCGCCGGTCGAAACGGCGGCGGCGGCGGCGGTACCGGCGGCGGC
GGCGGAAGCGGGGCAGGGTCGCGGCAGTACAACAACAACGACGACAGCGG
CGGGTTCTCGGCCTTGTCGGCGGCCAACGCCAAGGGTAGAGACCCTTCCG
AGCTCAAGGGACGGAAGACGGCATCCCCGCCCGACACCAGGGGAGGAAGC
AGCGCCGTCGCCGCTTCCGCTGGCGGCGAGGCGACCGGGTCCGCCGCCGC
TGCTAGCGGACGAGGGACACGTGGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1075:1510..3185+

>mRNA_E-siliculosus-1a_F_contig1075.526.1 ID=mRNA_E-siliculosus-1a_F_contig1075.526.1|Name=mRNA_E-siliculosus-1a_F_contig1075.526.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2250bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1075:1510..3185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGGCGGCGGCGGCGCCGGGGCGGCGCAAGGAAAGGCCGCCGAAGAGGA
AGAAGGTAGAGGGAAGGAAGACGAGGGAAGAGAGAGCGGCGGCGGCGCGG
GCTACGTGTACCCGGCTCTCAGCAGGCAGTCGACCCCCCGGGGGGAGCCC
CTGTGCTGCAAGCGCCTGGCGCAGGTGCCGCTGAGCCAGGTGATGGTGGT
GAGGGCCGGGGTGGTGACGCTCTGCGCCGAGGGGTTGCTGAAGCTCTGGG
CGCGGCCGACGATGCCGCCGCCGCTGCCGCCGCTGCAGATGGACGGGGCA
GACTTTGGGAGAGAAAAGAAGGGCGGCGGCGGCGCCGGGGCGGCGCAAGG
AAAGGCCGCCGAAGAGGAAGAAGGTAGAGGGAAGGAAGACGAGGGAAGAG
AGAGCGGCGGCGGCGCGGGCTACGTGTACCCGGCTCTCAGCAGGCAGTCG
ACCCCCCGGGGGGAGCCCCTGTGCTGCAAGCGCCTGGCGCAGGTGCCGCT
GAGCCAGGTGATGGTGGTGAGGGCCGGGGTGGTGACGCTCTGCGCCGAGG
GGTTGCTGAAGCTCTGGGCGCGGCCGACGATGCCGCCGCCGCTGCCGCCG
CTGCAGATGGACGGGGCAGACTTTGGGAGAGAAAAGGGAGACGACAGCGG
TAGCGGCGGCACGAGCGCGGCAATGGACGGCCAGCAGGAAGAAGCAGGCA
CCGCGTCGCCGCCGCTCGAGTCTTCATCCCTCCGAAGCAGCCCCTCCTAC
CGCGGAAAGGCCGTCGCCGCCTCTGTTGGCGGCGGGAGCGGCGGCGGCAC
CGCCGCCGCCCCCGCGGCGGCCGTCCGAAACGCCACCTCTTCTTCAGCCC
CTGGCGCTAGCACTAGCGCTGGCGCCGCAAGTACCACTACGGCGGTGGCT
GAAGCAACGGCGGCCGGCCTCTCGGTGGTCGGCGTAGCCCCGTCCTCGGG
CGGGGGGAACAAGAACGACCCTTCTTCCCGGGGGGGCAAGAACGCCAACG
CGGCGGTGGTGTCCCCCTTGCAGCCCGCCGCCCTAGACGCGCTGATCAAC
ACGGAGATCCTTACCCCTCGGGCGGACGGCAGCGGCGGCGGCGGCGGGGG
AGCGACGGGGACAGGCGGGCCCTCCAACGGCAAGAAGAAGGGCTTCTTCG
CCAAGGTTATCTTCTCCAAGAGCGCCGCCGGTCGAAACGGCGGCGGCGGC
GGCGGTACCGGCGGCGGCGGCGGAAGCGGGGCAGGGTCGCGGCAGTACAA
CAACAACGACGACAGCGGCGGGTTCTCGGCCTTGTCGGCGGCCAACGCCA
AGGGTAGAGACCCTTCCGAGCTCAAGGGACGGAAGACGGCATCCCCGCCC
GACACCAGGGGAGGAAGCAGCGCCGTCGCCGCTTCCGCTGGCGGCGAGGC
GACCGGGTCCGCCGCCGCTGCTAGCGGACGAGGGACACGTGGCGGAGACG
ACAGCGGTAGCGGCGGCACGAGCGCGGCAATGGACGGCCAGCAGGAAGAA
GCAGGCACCGCGTCGCCGCCGCTCGAGTCTTCATCCCTCCGAAGCAGCCC
CTCCTACCGCGGAAAGGCCGTCGCCGCCTCTGTTGGCGGCGGGAGCGGCG
GCGGCACCGCCGCCGCCCCCGCGGCGGCCGTCCGAAACGCCACCTCTTCT
TCAGCCCCTGGCGCTAGCACTAGCGCTGGCGCCGCAAGTACCACTACGGC
GGTGGCTGAAGCAACGGCGGCCGGCCTCTCGGTGGTCGGCGTAGCCCCGT
CCTCGGGCGGGGGGAACAAGAACGACCCTTCTTCCCGGGGGGGCAAGAAC
GCCAACGCGGCGGTGGTGTCCCCCTTGCAGCCCGCCGCCCTAGACGCGCT
GATCAACACGGAGATCCTTACCCCTCGGGCGGACGGCAGCGGCGGCGGCG
GCGGGGGAGCGACGGGGACAGGCGGGCCCTCCAACGGCAAGAAGAAGGGC
TTCTTCGCCAAGGTTATCTTCTCCAAGAGCGCCGCCGGTCGAAACGGCGG
CGGCGGCGGCGGTACCGGCGGCGGCGGCGGAAGCGGGGCAGGGTCGCGGC
AGTACAACAACAACGACGACAGCGGCGGGTTCTCGGCCTTGTCGGCGGCC
AACGCCAAGGGTAGAGACCCTTCCGAGCTCAAGGGACGGAAGACGGCATC
CCCGCCCGACACCAGGGGAGGAAGCAGCGCCGTCGCCGCTTCCGCTGGCG
GCGAGGCGACCGGGTCCGCCGCCGCTGCTAGCGGACGAGGGACACGTGGC
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