mRNA_E-siliculosus-1a_F_contig100.53.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig100.53.1
Unique NamemRNA_E-siliculosus-1a_F_contig100.53.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: D7FN51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN51_ECTSI)

HSP 1 Score: 959 bits (2478), Expect = 0.000e+0
Identity = 535/558 (95.88%), Postives = 541/558 (96.95%), Query Frame = 3 
Query:  168 MSSFHPLGSSADADPLTAAAPAELRFHHXXXXXXSWTPPSLPGETRILPRSSASAGRTRSDRGGGTKGITDPLHNXXXXXXXXXXXXXXXXXXXXXXXXXYSRAVRNNGGAIGNNAAPTRGQREWERGPSPAAGASRTLSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCRTPESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGAPDAPVEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGAKHGTPAAIDAIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDGGGFVPPPSTSRXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDGRGYDSLSPVRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTTSAGRAPPLDAEQYYEEGLEEEGGVWGEENAGMEETTDWSTSGAVV 1841
            MSSFHPLGSSADADPLTAAAPA+LRFHHXXXXXXSWTPPSLPGETRILPRSSASAGRTRSDRGGGTKGITDPLHNXXXXXXXXXXXXXXXXXXXXXXXX YSRAVRNNGGA G+NAAPTRGQREWERGPSPAAGASRTLS+VHSF LHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCR PESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGG  DA VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGA+HGTPAAI+AIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDGGGFVPPPSTSR     XXXXXXXXXXXXXXXXXXXX HGGGDGRGYDS SPVRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTTSAGRAP  DAEQYYEEGLEEEGGVWGEE+AGMEETTDWS SGAVV
Sbjct:    1 MSSFHPLGSSADADPLTAAAPADLRFHHXXXXXXSWTPPSLPGETRILPRSSASAGRTRSDRGGGTKGITDPLHNXXXXXXXXXXXXXXXXXXXXXXXXSYSRAVRNNGGATGSNAAPTRGQREWERGPSPAAGASRTLSVVHSFRLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCRPPESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGTSDALVEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAINAIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDGGGFVPPPSTSRPNAEEXXXXXXXXXXXXXXXXXXXXYHGGGDGRGYDSESPVRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTTSAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNSGAVV 558
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BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A835YKQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ1_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.570e-45
Identity = 98/231 (42.42%), Postives = 133/231 (57.58%), Query Frame = 3 
Query:  552 PSPAAGASRTLSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCRTPESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGAPDAPV-----EDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRK-GWGAKHG 1226
            P  +  A R LS VH F +H++  PTFC+ C +LL+G   QG+ C  C M +H  CQ   C+ DH C    +++++         GV L    P      L G+ +   P  P+     EDP +SDWH+ L+++ ++ VPD  A  CMVCS  FN+V RRHHCRRCG C+CG CS   VSDKV+  + + G V  +   EPVR CT CTRV+D+ LA AL ++ G G KHG
Sbjct:  232 PRLSLSAYRPLSQVHQFQVHTFTKPTFCNSCGKLLMGFTNQGVCCTKCEMAVHAACQHALCTADHKCFHAAALKVTL------TDGVPLGEQVP-----ELSGASAALNPPLPLAHSRSEDPTHSDWHKHLLRSCEMRVPDRTALACMVCSAMFNIVRRRHHCRRCGACVCGACSAVKVSDKVMVQDFSGGPVRYVKETEPVRTCTRCTRVVDEALARALSKRVGGGRKHG 451
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BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A7S3XR58_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR58_HETAK)

HSP 1 Score: 125 bits (315), Expect = 4.980e-27
Identity = 69/192 (35.94%), Postives = 95/192 (49.48%), Query Frame = 3 
Query:  576 RTLSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCRTPESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGA-----------PDAP----------VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVL 1088
            R L  VH F   S   P  C +CS+ ++ ++  G++C+VC M +H EC+    + DH CR P+++ +   V   R     L   +   +    G S++              P AP          +EDPL S WHQ+L    + WVPDSVA  CMVC   F L  RRHHCRRCG C+C  CS + V+D  L
Sbjct:  241 RVLRDVHQFQPTSVKLPVMCAICSKPIVSLLHTGVRCSVCRMEVHAECRVALVTPDHKCRQPQALSVRESVPEVRMTAHELAVAHRRSR----GNSQTXXXXXXXXXXXXXXPSAPAPGRNDDEVELEDPLASVWHQRLRARGEAWVPDSVAPACMVCGAAFGLFTRRHHCRRCGACVCAGCSASRVTDPAL 428
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BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A7S2XYB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.720e-25
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 3 
Query:  891 VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRL-------------SSGEPVRCCTPCTRVLDQQLAHAL 1196
            VEDPL+S+WH+QLV+  Q WVPDSVA  CMVC   F ++ RRHHCRRCG C+CG+CS   +++KVL  +     +I L             +S   VR C  CT ++D+++A +L
Sbjct:    8 VEDPLDSNWHKQLVKRRQEWVPDSVAPCCMVCGSVFGMLRRRHHCRRCGACVCGYCSSATITEKVLRTDPRNDEIISLMTVAGPTPDGGAAASEALVRVCAKCTVLIDRRIATSL 122
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BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A1D2MG42_ORCCI (Pleckstrin y domain-containing family F member 2 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MG42_ORCCI)

HSP 1 Score: 75.1 bits (183), Expect = 3.520e-11
Identity = 46/133 (34.59%), Postives = 61/133 (45.86%), Query Frame = 3 
Query:  891 VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGAKHGTPAAIDAIRKRFPGPSSSSTP 1289
            V D L     +   Q+  +WVPDS AA C VC  PF  V RRHHCR+CG+ +CG CS     ++ L  NQ         S +P+R C PC   +  +     Q   W     +    D+  +    PS SS P
Sbjct:  130 VNDLLKKSGKKPTEQHAAVWVPDSEAAACQVCRNPFTFVNRRHHCRKCGSVICGPCS----KNRALLPNQ---------SKKPLRVCNPCHNSVSGKNQDGNQNS-WAGNADSSGEDDSDDEGEENPSWSSAP 248
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A0C2G1L1_9BILA (Phorbol esters/diacylglycerol binding domain protein (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2G1L1_9BILA)

HSP 1 Score: 66.2 bits (160), Expect = 1.120e-9
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 3 
Query:  582 LSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQ---ATPCSDDHCCRTPESVQISAGVDGSRNMGVRLK 821
            ++M H F +HSY  PTFCD C  +L G++ QGLQC+VC +N+H  CQ   A  C  +      E  Q+  G+ G + M VR K
Sbjct:    8 INMPHRFSVHSYKRPTFCDHCGSMLYGLINQGLQCSVCKLNVHKRCQRNVANNCGINAKQMAAELAQL--GLTGDK-MSVRSK 87
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BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A0M3KFD5_ANISI (Protein kinase C-like 1B (inferred by orthology to a C. elegans protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3KFD5_ANISI)

HSP 1 Score: 65.9 bits (159), Expect = 8.870e-9
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 3 
Query:  582 LSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQ 722
            ++M H F +HSY  PTFCD C  +L G++ QGLQC+VC +N+H  CQ
Sbjct:   66 INMPHRFSVHSYKRPTFCDHCGSMLYGLINQGLQCSVCKLNVHKRCQ 112
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BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A0R3RMD4_9BILA (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3RMD4_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 8.880e-9
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 3 
Query:  588 MVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQ 722
            M H F +HSY  PTFCD C  +L G++ QGLQC+VC +N+H  CQ
Sbjct:    1 MPHRFTVHSYKRPTFCDHCGSMLYGLINQGLQCSVCKLNVHKRCQ 45
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BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A0N4TCF3_BRUPA (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4TCF3_BRUPA)

HSP 1 Score: 65.1 bits (157), Expect = 9.050e-9
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 3 
Query:  582 LSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQ 722
            ++M H F +HSY  PTFCD C  +L G++ QGLQC+VC +N+H  CQ
Sbjct:   33 INMPHRFTVHSYKRPTFCDHCGSMLYGLINQGLQCSVCKLNVHKRCQ 79
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A8B7PAX6_HYAAZ (pleckstrin homology domain-containing family F member 2-like isoform X2 n=3 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PAX6_HYAAZ)

HSP 1 Score: 68.2 bits (165), Expect = 1.160e-8
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 3 
Query:  891 VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSR-PFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPC 1160
            V+D LN    +    +  +WVPD  A  C  C R  FN++ RRHHCR+CG  +CG CS    S K+L  +Q         S +P+RCC  C
Sbjct:  130 VQDLLNKSGKKAADTHAAVWVPDDAATTCQHCQRVQFNVIQRRHHCRKCGRVVCGACS----SKKILLPHQ---------SSKPLRCCLAC 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN51_ECTSI0.000e+095.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKQ1_9STRA3.570e-4542.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XR58_HETAK4.980e-2735.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XYB4_9STRA2.720e-2545.22Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1D2MG42_ORCCI3.520e-1134.59Pleckstrin y domain-containing family F member 2 n... [more]
A0A0C2G1L1_9BILA1.120e-942.17Phorbol esters/diacylglycerol binding domain prote... [more]
A0A0M3KFD5_ANISI8.870e-953.19Protein kinase C-like 1B (inferred by orthology to... [more]
A0A0R3RMD4_9BILA8.880e-955.56Phorbol-ester/DAG-type domain-containing protein n... [more]
A0A0N4TCF3_BRUPA9.050e-953.19Phorbol-ester/DAG-type domain-containing protein n... [more]
A0A8B7PAX6_HYAAZ1.160e-839.56pleckstrin homology domain-containing family F mem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig100contigE-siliculosus-1a_F_contig100:14482..19915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1677
Model size2439
Exons7
Ec32 orthologEc-06_008410.1
Ec32 ortholog descriptionFYVE zinc finger
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01001,ko01009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.13
EggNOG OGsKOG0694@1,KOG0694@2759,KOG1841@1,KOG1841@2759
EggNOG free text desc.1-phosphatidylinositol binding
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
KEGG Pathwayko01521,ko04010,ko04012,ko04014,ko04015,ko04020,ko04062,ko04064,ko04066,ko04070,ko04071,ko04140,ko04144,ko04150,ko04270,ko04310,ko04350,ko04370,ko04510,ko04540,ko04650,ko04658,ko04659,ko04660,ko04662,ko04666,ko04670,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04750,ko04911,ko04912,ko04916,ko04918,ko04919,ko04920,ko04921,ko04925,ko04931,ko04933,ko04960,ko04961,ko04970,ko04971,ko04972,ko04973,ko05031,ko05032,ko05140,ko05143,ko05146,ko05161,ko05162,ko05200,ko05205,ko05206,ko05214,ko05223,ko05225,ko05231,map01521,map04010,map04012,map04014,map04015,map04020,map04062,map04064,map04066,map04070,map04071,map04140,map04144,map04150,map04270,map04310,map04350,map04370,map04510,map04540,map04650,map04658,map04659,map04660,map04662,map04666,map04670,map04713,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04750,map04911,map04912,map04916,map04918,map04919,map04920,map04921,map04925,map04931,map04933,map04960,map04961,map04970,map04971,map04972,map04973,map05031,map05032,map05140,map05143,map05146,map05161,map05162,map05200,map05205,map05206,map05214,map05223,map05225,map05231
KEGG koko:K04679,ko:K18052,ko:K19662
Seed eggNOG ortholog2880.D7FN51
Seed ortholog evalue1.5e-279
Seed ortholog score968.4
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.6666558-UTR-E-siliculosus-1a_F_contig100:14481..150761622927504.6666558-UTR-E-siliculosus-1a_F_contig100:14481..15076Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 14482..15076 -
1696318555.7996912-UTR-E-siliculosus-1a_F_contig100:14481..150761696318555.7996912-UTR-E-siliculosus-1a_F_contig100:14481..15076Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 14482..15076 -
1622927504.75981-UTR-E-siliculosus-1a_F_contig100:19475..195201622927504.75981-UTR-E-siliculosus-1a_F_contig100:19475..19520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 19476..19520 -
1696318555.8758817-UTR-E-siliculosus-1a_F_contig100:19475..195201696318555.8758817-UTR-E-siliculosus-1a_F_contig100:19475..19520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 19476..19520 -
1622927504.7717843-UTR-E-siliculosus-1a_F_contig100:19793..199151622927504.7717843-UTR-E-siliculosus-1a_F_contig100:19793..19915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 19794..19915 -
1696318555.890121-UTR-E-siliculosus-1a_F_contig100:19793..199151696318555.890121-UTR-E-siliculosus-1a_F_contig100:19793..19915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 19794..19915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.683962-CDS-E-siliculosus-1a_F_contig100:15076..157211622927504.683962-CDS-E-siliculosus-1a_F_contig100:15076..15721Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 15077..15721 -
1696318555.8126035-CDS-E-siliculosus-1a_F_contig100:15076..157211696318555.8126035-CDS-E-siliculosus-1a_F_contig100:15076..15721Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 15077..15721 -
1622927504.6962934-CDS-E-siliculosus-1a_F_contig100:16433..165501622927504.6962934-CDS-E-siliculosus-1a_F_contig100:16433..16550Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 16434..16550 -
1696318555.8214555-CDS-E-siliculosus-1a_F_contig100:16433..165501696318555.8214555-CDS-E-siliculosus-1a_F_contig100:16433..16550Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 16434..16550 -
1622927504.7079759-CDS-E-siliculosus-1a_F_contig100:17002..171551622927504.7079759-CDS-E-siliculosus-1a_F_contig100:17002..17155Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 17003..17155 -
1696318555.8303192-CDS-E-siliculosus-1a_F_contig100:17002..171551696318555.8303192-CDS-E-siliculosus-1a_F_contig100:17002..17155Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 17003..17155 -
1622927504.7200487-CDS-E-siliculosus-1a_F_contig100:17325..175721622927504.7200487-CDS-E-siliculosus-1a_F_contig100:17325..17572Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 17326..17572 -
1696318555.8388226-CDS-E-siliculosus-1a_F_contig100:17325..175721696318555.8388226-CDS-E-siliculosus-1a_F_contig100:17325..17572Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 17326..17572 -
1622927504.7333758-CDS-E-siliculosus-1a_F_contig100:18092..182041622927504.7333758-CDS-E-siliculosus-1a_F_contig100:18092..18204Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 18093..18204 -
1696318555.84877-CDS-E-siliculosus-1a_F_contig100:18092..182041696318555.84877-CDS-E-siliculosus-1a_F_contig100:18092..18204Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 18093..18204 -
1622927504.746235-CDS-E-siliculosus-1a_F_contig100:19072..194751622927504.746235-CDS-E-siliculosus-1a_F_contig100:19072..19475Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 19073..19475 -
1696318555.857838-CDS-E-siliculosus-1a_F_contig100:19072..194751696318555.857838-CDS-E-siliculosus-1a_F_contig100:19072..19475Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 19073..19475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig100.53.1prot_E-siliculosus-1a_F_contig100.53.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig100 15077..19475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig100.53.1

>prot_E-siliculosus-1a_F_contig100.53.1 ID=prot_E-siliculosus-1a_F_contig100.53.1|Name=mRNA_E-siliculosus-1a_F_contig100.53.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=559bp
MSSFHPLGSSADADPLTAAAPAELRFHHNDDDDDSWTPPSLPGETRILPR
SSASAGRTRSDRGGGTKGITDPLHNNNSAGGSFASGGGDGADGAAAEEES
YSRAVRNNGGAIGNNAAPTRGQREWERGPSPAAGASRTLSMVHSFGLHSY
YAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCRTPES
VQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGAPDAPVEDPLNSDW
HQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHT
AVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGA
KHGTPAAIDAIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDG
GGFVPPPSTSRSNAEEEEYEGQEEQEGMGGSGGNGNYHGGGDGRGYDSLS
PVRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSS
RLPAATPKSAVTTSAGRAPPLDAEQYYEEGLEEEGGVWGEENAGMEETTD
WSTSGAVV*
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mRNA from alignment at E-siliculosus-1a_F_contig100:14482..19915-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig100.53.1 ID=mRNA_E-siliculosus-1a_F_contig100.53.1|Name=mRNA_E-siliculosus-1a_F_contig100.53.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5434bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:14482..19915- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAACTTCGTTTCGCGTTGGAACAATCTACCACGCGCGACGTCCCACCTGA
TACGGGAAACTCGAGAGGCCGCACGCAACTTGGGGCGTTTCATAGGATAA
GCACTTGTTCACTTCAGCACAGGTATGGCGAGCGCTACGCATTTTTGAAA
TCCCTCCGCATGTTCGACATAGAGGTAGGTGTCCTCCCAGCAACTGCCTC
CAGTGAGTAGCGCAGGAAAGTTACGAAGTGTGTGCAGGATCACACAAGAC
TGCACATGCATGTTGTGCAAGAAATCTACTGTGTCACGAATCTTCTGGTT
GACCAAGTTAGTCGAGAACGCCACTTCCTTCAATCCCATCTCGACTACTA
CTCGCTTGGGTCGATTCCCGAAACGCAAAACAAATGTCCCTGCAGGTATA
TATATAAGAGGCTTGTGCGCCTAGAAAGCCGAGCGGCGAGATGAGCTCCT
TCCATCCGCTGGGGTCGTCCGCAGATGCTGATCCCCTCACTGCCGCTGCC
CCGGCCGAGCTTCGATTCCATCACAACGATGATGACGACGACTCGTGGAC
GCCACCTTCGTTGCCTGGAGAGACCCGTATTCTCCCTCGTTCCAGCGCTA
GCGCTGGTCGAACGCGCAGCGACCGTGGCGGTGGCACCAAGGGCATCACA
GACCCTCTCCACAACAACAACAGCGCCGGCGGTAGCTTTGCAAGCGGTGG
CGGTGATGGTGCTGACGGGGCGGCTGCGGAAGAGGAGAGCTACAGCCGTG
CGGTAAGGAACAATGGTGGCGCTATCGGGAATAACGCCGCCCCCACAAGA
GGGCAACGAGAGTGGGAAAGAGGGCCATCGCCGGCAGCGGGAGGTGAGAC
GGATTCAAGAAGAGTGTAATAGTGCGACCGTAGACTGTTTTGGTGCCTCA
TTGAAATAATCAGCTGCGCTAAAGCAGCAGCAGCAGCATTGACAACAACA
GCAACGGCTCTACATTGCGTGTGCATGCGAACAATTCTAAGTTGCCCCGC
TGTGAAAGTGGTACCATAATCTTTGTTGTAGTGAAACGAGACGAGGGAGA
TTGGAGACCGGACATGCATGTTCCTGTCTTGCACCGTGACACGGGGACGG
ACAAGAGATAACATGCGCCTTACGTGCTACGGACAGACGGGGTGGACGGA
CGGAGTTTGATAGAATGCAAAACGTGTGTGTCGGACGGACAGACGGGAAA
GTAATGTAGTATGCATGCACCATATCATATGTGCACCATATCATACGTGC
AGCGGACGGATGGAAGGACATCTGCAACTACAAGCAGGCACGGTATGTGT
CAAGGGAAGCCGGAACAGGAAAGGAGATGTACTTGTAGTGCGTGTAACAT
CGGGTCGGCGTCAGAGCATCATCCTTCCTAAGCCCCGTAGAAATTTAGTT
AAGATAAATCTAAGTTTCGCTTGGTGTAGACGTGTAGACTCACGTTCCAA
GAGAAAGCGCGGAAGAGGGGTGTCGATTGCCAAGGACGGCTCCGCAGGTC
TTGCTGGCAAATGCCAAACGGAGGAAGATGGACACCTGAACGCCGTGAAA
GGAATTATATATATTTTTCTTTTCTTCACGGCGTGGGGCCGCCATGTACT
CACTTGTCTCTTCCTCTCTTCCTTTATTTGTGGTAGTAATCAACGCATCC
CTGCCGTTGTTTGCTGTCGACGTTGCTGTGTTTGCTCGATGTTTTCTTGT
CCACGTTGCAGCATCCCGCACGCTCTCCATGGTGCACTCGTTTGGGCTGC
ACAGCTACTACGCCCCCACTTTTTGCGACGTCTGCTCGCAGCTGCTCATC
GGGATCATGCAGCAAGGGTTGCAGTGAGTGTGCGGTTTCATATGACAAGC
AGTATTTAGTGTTGTTTGCTGATTTTCGTATGTTGCGTGGGGGGTGCGCC
ACCCGTTGGCTCAATGTTTTCGAGCAACTTCTGTGTCACATACGTAGATC
CTCTCGCGTTCGGTATAACAGGGACGTACATTGACGAGCGAGGTTTGTTT
GTCTCTTTGATCGGCTTTGCAGCTCCGATTTTCAGGTGCTACCCAGTCTC
GGCCAGGGATCCTCGCCACGTTGTCATCTCGCTGGCTATTAGGAGCCGAA
ACCAAAGCATTTGACTAGCCAGCGGCTGACTAGGCTAACTAGGCTGATTG
TTTGGTTCGACTTCTGAAAGGGTTTGTCATGTGGTCCGAATGACCCGGTG
ACTGGTCTAGTGGTGTGAATTCGGCTTCTATACGACTTACGGTACCCCAA
AGGAAAGTGCACAGCACGATACATATGCTGATACCCTTCTAACCCTTGTC
CGTGTCCTCTCCCTCCCCCCTCCCCCGCCTCTCCATACGAAAGGTGCGCT
GTGTGTGGCATGAACATTCACCCCGAGTGTCAAGCCACGCCCTGCTCCGA
CGACCACTGCTGCCGCACGCCCGAATCCGTTCAAATATCGGCCGGAGTTG
ACGGCTCTCGGAACATGGGGGTACGCCTGAAGCCGGGGTACCCTGGTGGG
AAAAACGGGGTGTTGGGCGGGAGTAGGAGCGGTGGTGCTCCCGACGCTCC
GGTGGAGGACCCGCTAAACAGCGATTGGCACCAGCAGCTGGTAAGTTTTT
GTGGACAAGTTTTTTGTCATTACTGATGCTGTTCTTTGTTTGCTTCTGCC
CCATGTTTTTTCCTTGCGTGACTGCACTGGCCGGTGAACGGCTGCTCCGT
GTTGTTCTCATCTCCCTGCCGTCCATTCCCGTATGTGGTATGCAACTATC
CCGTGTCAAGGTGCAAAACAACCAGCTGTGGGTGCCAGACTCGGTGGCCG
CGGGTTGCATGGTCTGCTCCCGCCCGTTCAACCTCGTTCTCCGAAGGCAC
CACTGCCGTCGGTGCGGGACGTGCATGTGCGGTTTTTGCTCCCACACGGC
TGTGAGCGACAAGGTGCGTTTTCGAAGAGTCTCCAAGGTTTTCTTTGTGT
TTACTGCATACGGCACATGACGGGACCTTGTGGGCTCGTTTTGCTATGTC
AGTGTGTGAGGCTGTGTTGACACCAGGTCAATCGTGTCCAATGGCGCCAC
ATGGGTGGCAGTCTCCGACCAAATTTCGCCATCGGATCCGTTTGCCACGT
GACAGAACCGACTGTTGTTGCTGTGCCCTATGGCTGCGTTGTTGCTCGCG
CACAAGTCACGAACATGTAGCAGGAGCGGGCGGAACGACATGGTCTTGCT
GACGACTTGTCATGCTACTGTACATGTACATGGTGGAAGAGAGTGTATTG
CGTCGTGTGTTGGCACGGACGGGTCTCTTTACTGCGCACTTTTGGCGTTG
GGATCCCCCTAGGTTTGTCGCTAACCGCTGCTTGTCGTCTCGTCTCGAGT
TTGTGCCGCACCCAGGTCCTTTCCGTGAACCAGACAACCGGTGCAGTGAT
ACGGTTGTCTTCCGGGGAACCCGTCCGCTGTTGCACCCCATGTACGCGCG
TCCTTGACCAGCAGCTCGCGCATGCTTTGCAGGTCCGTGGGTGCAGGGTA
GTAGTGGTGGTATGATGCGTACTGTTGATATTTCATGCCTTAGTCGTAAG
ACCGTTGACCTCGCAGTCTACTAACCGGGGACGGAGCACGCCCGGCTTCC
ACCGGACCCAGACTGAAACGCTTTGCACCAACCCCGTGCGGTGTTCATCG
AGTTGATATCGTGTTTCTCTCCCCTTGTATATGGATGACATCTCCGAATG
GGTTGATCTATTTCACGTCTCGCCACTTGCTATGAAACGCTTCGTTTGTG
TGTATGTGGAAACTTCACACACGTAGTACCGTCAGCCCCATTTGTGCGGG
ACCAAGGTTCTCCACCCGCTCGCAATGAGTTATACCAAACGCACAACCCC
TCCCCGACAACCTGGTTTTGTGGTAGTGAGTGGCGTGTTTTACGGCGTCG
TTGCCAATCCGGGGCCAACCCAAAGTGCGGGTGTGTGTGGGTGGGGGGGA
CCGAGGAAAGTGAAGCCGGCGGATCTCTCTTTGGTACTAAATTGTTACCC
TGCGATTCCACATTCCAGTCAGCATTTCCCAGTGAAGGAGGAGAGACGCC
GATCTTGCTTCTGTCAACTCTTTTAAGTTTTAAGGAAATTTGAGGGTAGC
CCATCTTTGTCTGTACCGCGGCATTGGCTGGGTTTTTGACCTTCCTCTCC
CCCCCCCCCCCACCCGCATGATAACCCTCATTGACCACCACCAGCGAAAA
GGGTGGGGTGCTAAGCATGGCACACCGGCCGCCATTGATGCAATTCGCAA
GAGGTTTCCGGGCCCGTCTTCGTCATCAACTCCTTTCGTCGCCGCCGGAG
GGGCAGGCTATGCTGCCACGCTGCCGATATTGTCGGCTGCTGCAACGGAG
GGCTACGACGGCGGCGGTTTCGTGCCCCCCCCATCCACATCCCGCTCGAA
CGCCGAGGAGGAGGAATACGAGGGGCAGGAGGAGCAGGAAGGCATGGGTG
GTTCAGGTGGCAACGGCAACTATCATGGCGGTGGAGATGGGAGAGGCTAT
GATAGTTTGAGCCCTGTCCGCCGTATGAAGCACGGCGTCGAAGACCCACT
CGCCAGCGTGCAGGAGCATTCGCCTCCACCCCCGCCGCGTCGATGGCAAG
AGCCACAACCAACCGCTGGAGAAGTTCCGTCTTGGCTGGGCAAGAGCTCG
TTGGGCTCGTCCCGACTCCCGGCGGCAACACCGAAAAGTGCTGTCACTAC
GAGCGCCGGCAGGGCGCCGCCGCTCGATGCGGAACAATACTACGAGGAGG
GTCTCGAGGAAGAGGGTGGGGTGTGGGGCGAAGAGAACGCCGGCATGGAA
GAAACGACAGACTGGTCCACCTCCGGGGCTGTGGTGTAATCTTTCTCAAG
TCGAACTCAAGCCCATGTCAAAAGCGATGCGTGCCGATTTGTTGGCGGAA
GGTTGGGTGGGGTAGGGGTTAGCGACGGTGGTGTTCGTGTCATGGCGCGA
CTCTGTTGTCGCTTTGCGTTGAGGTGGGTGTATTGGTAGCTTGGGTGGTG
TTTGTGTAGGAAAGAAGGTCACGGTGGTGGTTACAAGAAGCGCTGCAGTG
GTTTTCGATAAGGAGGAAGTTGTGCTGATTTCCGTGTGATTTTTTCCAGA
CGAGAAACAACTCTCAAAATTTTGCGCTTGTTTGAAACGCTTCGACAACG
CGGGACTTTCGAGGCACTGACCACAATATGCTTTGTGTGGAAGTTTGATA
GATAAATGCCGATAACTAAAAGAATGGCGCGTAGGGAAGGGAGCTCTGTT
GGTGAACTGAATAAGAGAGGGTTGGAGACGTTAGTTTTCTTTTAATCTCC
CAGAAGGAAAAAATCGTCGAAACTATCTACTTTTGCTGGGTATGACATGC
TTTGGTTCCTCTAGAATCCTTTGTCAAGCAAAACATTAGGATTGGCCACG
GCAGCCTTAATAGTTGAATCGCCAACCATTCAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig100:14482..19915-

>mRNA_E-siliculosus-1a_F_contig100.53.1 ID=mRNA_E-siliculosus-1a_F_contig100.53.1|Name=mRNA_E-siliculosus-1a_F_contig100.53.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:14482..19915- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCTCCTTCCATCCGCTGGGGTCGTCCGCAGATGCTGATCCCCTCAC
TGCCGCTGCCCCGGCCGAGCTTCGATTCCATCACAACGATGATGACGACG
ACTCGTGGACGCCACCTTCGTTGCCTGGAGAGACCCGTATTCTCCCTCGT
TCCAGCGCTAGCGCTGGTCGAACGCGCAGCGACCGTGGCGGTGGCACCAA
GGGCATCACAGACCCTCTCCACAACAACAACAGCGCCGGCGGTAGCTTTG
CAAGCGGTGGCGGTGATGGTGCTGACGGGGCGGCTGCGGAAGAGGAGAGC
TACAGCCGTGCGGTAAGGAACAATGGTGGCGCTATCGGGAATAACGCCGC
CCCCACAAGAGGGCAACGAGAGTGGGAAAGAGGGCCATCGCCGGCAGCGG
GAGATGAGCTCCTTCCATCCGCTGGGGTCGTCCGCAGATGCTGATCCCCT
CACTGCCGCTGCCCCGGCCGAGCTTCGATTCCATCACAACGATGATGACG
ACGACTCGTGGACGCCACCTTCGTTGCCTGGAGAGACCCGTATTCTCCCT
CGTTCCAGCGCTAGCGCTGGTCGAACGCGCAGCGACCGTGGCGGTGGCAC
CAAGGGCATCACAGACCCTCTCCACAACAACAACAGCGCCGGCGGTAGCT
TTGCAAGCGGTGGCGGTGATGGTGCTGACGGGGCGGCTGCGGAAGAGGAG
AGCTACAGCCGTGCGGTAAGGAACAATGGTGGCGCTATCGGGAATAACGC
CGCCCCCACAAGAGGGCAACGAGAGTGGGAAAGAGGGCCATCGCCGGCAG
CGGGAGCATCCCGCACGCTCTCCATGGTGCACTCGTTTGGGCTGCACAGC
TACTACGCCCCCACTTTTTGCGACGTCTGCTCGCAGCTGCTCATCGGGAT
CATGCAGCAAGGGTTGCACATCCCGCACGCTCTCCATGGTGCACTCGTTT
GGGCTGCACAGCTACTACGCCCCCACTTTTTGCGACGTCTGCTCGCAGCT
GCTCATCGGGATCATGCAGCAAGGGTTGCAGTGCGCTGTGTGTGGCATGA
ACATTCACCCCGAGTGTCAAGCCACGCCCTGCTCCGACGACCACTGCTGC
CGCACGCCCGAATCCGTTCAAATATCGGCCGGAGTTGACGGCTCTCGGAA
CATGGGGGTACGCCTGAAGCCGGGGTACCCTGGTGGGAAAAACGGGGTGT
TGGGCGGGAGTAGGAGCGGTGGTGCTCCCGACGCTCCGGTGGAGGACCCG
CTAAACAGCGATTGGCACCAGCAGCTGGTGCGCTGTGTGTGGCATGAACA
TTCACCCCGAGTGTCAAGCCACGCCCTGCTCCGACGACCACTGCTGCCGC
ACGCCCGAATCCGTTCAAATATCGGCCGGAGTTGACGGCTCTCGGAACAT
GGGGGTACGCCTGAAGCCGGGGTACCCTGGTGGGAAAAACGGGGTGTTGG
GCGGGAGTAGGAGCGGTGGTGCTCCCGACGCTCCGGTGGAGGACCCGCTA
AACAGCGATTGGCACCAGCAGCTGGTGCAAAACAACCAGCTGTGGGTGCC
AGACTCGGTGGCCGCGGGTTGCATGGTCTGCTCCCGCCCGTTCAACCTCG
TTCTCCGAAGGCACCACTGCCGTCGGTGCGGGACGTGCATGTGCGGTTTT
TGCTCCCACACGGCTGTGAGCGACAAGGTGCAAAACAACCAGCTGTGGGT
GCCAGACTCGGTGGCCGCGGGTTGCATGGTCTGCTCCCGCCCGTTCAACC
TCGTTCTCCGAAGGCACCACTGCCGTCGGTGCGGGACGTGCATGTGCGGT
TTTTGCTCCCACACGGCTGTGAGCGACAAGGTCCTTTCCGTGAACCAGAC
AACCGGTGCAGTGATACGGTTGTCTTCCGGGGAACCCGTCCGCTGTTGCA
CCCCATGTACGCGCGTCCTTGACCAGCAGCTCGCGCATGCTTTGCAGGTC
CTTTCCGTGAACCAGACAACCGGTGCAGTGATACGGTTGTCTTCCGGGGA
ACCCGTCCGCTGTTGCACCCCATGTACGCGCGTCCTTGACCAGCAGCTCG
CGCATGCTTTGCAGCGAAAAGGGTGGGGTGCTAAGCATGGCACACCGGCC
GCCATTGATGCAATTCGCAAGAGGTTTCCGGGCCCGTCTTCGTCATCAAC
TCCTTTCGTCGCCGCCGGAGGGGCAGGCTATGCTGCCACGCTGCCGATAT
TGTCGGCTGCTGCAACGGAGGGCTACGACGGCGGCGGTTTCGTGCCCCCC
CCATCCACATCCCGCTCGAACGCCGAGGAGGAGGAATACGAGGGGCAGGA
GGAGCAGGAAGGCATGGGTGGTTCAGGTGGCAACGGCAACTATCATGGCG
GTGGAGATGGGAGAGGCTATGATAGTTTGAGCCCTGTCCGCCGTATGAAG
CACGGCGTCGAAGACCCACTCGCCAGCGTGCAGGAGCATTCGCCTCCACC
CCCGCCGCGTCGATGGCAAGAGCCACAACCAACCGCTGGAGAAGTTCCGT
CTTGGCTGGGCAAGAGCTCGTTGGGCTCGTCCCGACTCCCGGCGGCAACA
CCGAAAAGTGCTGTCACTACGAGCGCCGGCAGGGCGCCGCCGCTCGATGC
GGAACAATACTACGAGGAGGGTCTCGAGGAAGAGGGTGGGGTGTGGGGCG
AAGAGAACGCCGGCATGGAAGAAACGACAGACTGGTCCACCTCCGGGGCT
GTGGTGTAACGAAAAGGGTGGGGTGCTAAGCATGGCACACCGGCCGCCAT
TGATGCAATTCGCAAGAGGTTTCCGGGCCCGTCTTCGTCATCAACTCCTT
TCGTCGCCGCCGGAGGGGCAGGCTATGCTGCCACGCTGCCGATATTGTCG
GCTGCTGCAACGGAGGGCTACGACGGCGGCGGTTTCGTGCCCCCCCCATC
CACATCCCGCTCGAACGCCGAGGAGGAGGAATACGAGGGGCAGGAGGAGC
AGGAAGGCATGGGTGGTTCAGGTGGCAACGGCAACTATCATGGCGGTGGA
GATGGGAGAGGCTATGATAGTTTGAGCCCTGTCCGCCGTATGAAGCACGG
CGTCGAAGACCCACTCGCCAGCGTGCAGGAGCATTCGCCTCCACCCCCGC
CGCGTCGATGGCAAGAGCCACAACCAACCGCTGGAGAAGTTCCGTCTTGG
CTGGGCAAGAGCTCGTTGGGCTCGTCCCGACTCCCGGCGGCAACACCGAA
AAGTGCTGTCACTACGAGCGCCGGCAGGGCGCCGCCGCTCGATGCGGAAC
AATACTACGAGGAGGGTCTCGAGGAAGAGGGTGGGGTGTGGGGCGAAGAG
AACGCCGGCATGGAAGAAACGACAGACTGGTCCACCTCCGGGGCTGTGGT
GTAA
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