mRNA_E-siliculosus-1a_F_contig107.504.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig107.504.1
Unique NamemRNA_E-siliculosus-1a_F_contig107.504.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: D7FJ05_ECTSI (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ05_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 6.340e-117
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1
Query:  118 MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFVNR 618
            MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFVNR
Sbjct:    1 MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFVNR 167          
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: A0A835YIK6_9STRA (Protein-tyrosine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK6_9STRA)

HSP 1 Score: 251 bits (641), Expect = 2.070e-80
Identity = 122/170 (71.76%), Postives = 140/170 (82.35%), Query Frame = 1
Query:  118 MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDK-----RNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFV 612
            MFFPPV+F  VEEGLYRS LP EINYPFLERL LKTIIYL+PD+DIDAQL SFLEDQ+V LV LGE D+      ++++   + EE V+ AL  +VD+ HYP+L+ C TGKHRTGTVVACLRKLQRWNL+SIFEEYR FTKHKVRVQNEQFIELFDTDLV +PP  PRF+
Sbjct:    1 MFFPPVNFAPVEEGLYRSGLPTEINYPFLERLKLKTIIYLFPDEDIDAQLESFLEDQEVKLVCLGEQDESAQLANKSRNNHMIAEETVIEALSYLVDTTHYPLLVMCGTGKHRTGTVVACLRKLQRWNLSSIFEEYRHFTKHKVRVQNEQFIELFDTDLVRIPPRPPRFL 170          
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: A0A485KRG3_9STRA (Aste57867_10594 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KRG3_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.150e-61
Identity = 94/167 (56.29%), Postives = 131/167 (78.44%), Query Frame = 1
Query:  121 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHD--DKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFVN 615
            F PPV++G++EE LYRS +PNE+N+PFLERL L+ I+YL P++  +AQL+SF+E+Q++ L+ LG +   + R K+W P+ EE VLAAL+ I+D  +YP+ +TC+ G+ RTG VV CLRK+Q+W+L+SIFEEYRRF   KVR+QNEQFIELFDTDLV +P   P ++ 
Sbjct:    4 FIPPVNYGMIEEDLYRSGIPNELNFPFLERLNLRKIVYLAPEEP-NAQLLSFVEEQEIELIVLGGNTKLENRRKAWEPMSEETVLAALDIILDRGNYPLFLTCHLGRDRTGAVVGCLRKIQQWHLSSIFEEYRRFAGSKVRLQNEQFIELFDTDLVTIPSNPPNWIK 169          
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: F0ZWN6_DICPU (Tyrosine-protein phosphatase domain-containing protein n=4 Tax=Dictyostelia TaxID=33083 RepID=F0ZWN6_DICPU)

HSP 1 Score: 201 bits (512), Expect = 5.180e-61
Identity = 96/162 (59.26%), Postives = 123/162 (75.93%), Query Frame = 1
Query:  127 PPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFV 612
            PP++FG+V + LYRS  PNE+N+PFLE+L LK II+L PDD    Q  +F+EDQD+ L+ LG   D     W P+ EEIV++AL+ I++   YP+++ CN G+HRTGTV+ CLRKLQRWNLTSIFEEYRRF   KVR+ NEQFIELFDTDLV +P  AP+F+
Sbjct:    6 PPLNFGMVADDLYRSGQPNELNFPFLEKLQLKKIIFLAPDDP-SQQFQNFVEDQDIELIHLGM--DTHQNPWNPISEEIVISALKIILNMESYPLMVMCNLGRHRTGTVIGCLRKLQRWNLTSIFEEYRRFAGSKVRLLNEQFIELFDTDLVGIPDNAPKFL 164          
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: A0A1V9YB19_9STRA (Tyrosine phosphatase n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YB19_9STRA)

HSP 1 Score: 201 bits (512), Expect = 6.940e-61
Identity = 94/167 (56.29%), Postives = 130/167 (77.84%), Query Frame = 1
Query:  121 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHD--DKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFVN 615
            F PPV++G++EE LYRS +PNE+N+PFLERL L+ I+YL P++  + QL+SF+E+Q++ LV LG +   + R K+W P+ EE VLAAL+ I+D  +YP+ +TC+ G+ RTG VV CLRK+Q+W+L+SIFEEYRRF   KVR+QNEQFIELFDTDLV +P   P ++ 
Sbjct:    4 FIPPVNYGMIEEDLYRSGIPNELNFPFLERLNLRKIVYLAPEEP-NPQLLSFVEEQEIELVVLGCNTKLESRRKAWEPMSEETVLAALDIILDRSNYPLFLTCHLGRDRTGAVVGCLRKIQQWHLSSIFEEYRRFAGSKVRLQNEQFIELFDTDLVTIPTNPPNWIK 169          
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: A0A139ANM7_GONPJ (Protein-tyrosine phosphatase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139ANM7_GONPJ)

HSP 1 Score: 200 bits (509), Expect = 2.230e-60
Identity = 98/167 (58.68%), Postives = 126/167 (75.45%), Query Frame = 1
Query:  121 FFPPV--SFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFVN 615
            F PP+  +FG+VEE LYRS  PNE+N+PFLERLGLKTIIYL P+D  +   ++F++DQD+ +  LG        +W P+ EE+VL AL+ I+D  +YPV++ CN G+HRTGTV+ CLRKLQRWNLTSIFEEYRR+T  KVRV NEQFIELFDTDLV     +P+++ 
Sbjct:    5 FIPPLVRNFGMVEEDLYRSGQPNELNFPFLERLGLKTIIYLAPEDP-NQTFLNFVDDQDIQMHHLGTTTS--TNAWDPISEEVVLEALDIILDPKNYPVMVMCNLGRHRTGTVIGCLRKLQRWNLTSIFEEYRRYTGPKVRVLNEQFIELFDTDLVPTRATSPKWIE 168          
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: A0A7S2BN42_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BN42_9STRA)

HSP 1 Score: 201 bits (511), Expect = 3.650e-60
Identity = 107/184 (58.15%), Postives = 128/184 (69.57%), Query Frame = 1
Query:  118 MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYL-YPDD--DIDAQLVSFLEDQDVTLVSLGEHDDKRN--------KSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFVNR*SGQVA 636
            M FPP +FG+VE+ L+R  +PN+IN PFLE+L L TI+ L +P D  DID  L++FL+D  V LV L E DD           K+  PV E++VL AL  +VD+  YP+LIT   GKHRTGTVVACLRKLQRWNLTSIFEEYRRF  HK R QNEQFIELFD D VH+PP AP F+   S  +A
Sbjct:   10 MLFPPTNFGVVEQDLFRGTIPNQINTPFLEKLNLHTIVLLEHPGDYEDIDPMLLAFLKDNCVELVRLREDDDSGAREMQLSGPKTSQPVSEDVVLRALREVVDATKYPILITDIYGKHRTGTVVACLRKLQRWNLTSIFEEYRRFAGHKRRPQNEQFIELFDIDQVHVPPRAPAFLPSSSDSMA 193          
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: M4C493_HYAAE (Tyrosine-protein phosphatase domain-containing protein n=18 Tax=Oomycota TaxID=4762 RepID=M4C493_HYAAE)

HSP 1 Score: 199 bits (505), Expect = 7.360e-60
Identity = 97/168 (57.74%), Postives = 129/168 (76.79%), Query Frame = 1
Query:  121 FFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHD--DKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFVNR 618
            F PPV++G+VEE LYRS  PNE+N+PFLERL L+TIIYL  ++  + Q  SF+E+Q++ LV LG +   + R KSW P+ EE VLAAL+ I+D  +YP+ +TC+ G+ RTG VV CLRK+Q W+L+SIFEEYRRF   KVR+QNEQFIELFDTDLV +P ++P +V +
Sbjct:    4 FIPPVNYGMVEEDLYRSGQPNELNFPFLERLNLRTIIYLALEEP-NPQFQSFVEEQEIQLVFLGGNTRMESRRKSWEPLSEETVLAALDIILDRSNYPLYLTCHLGRDRTGAVVGCLRKIQGWHLSSIFEEYRRFAGSKVRLQNEQFIELFDTDLVTIPAKSPSWVRK 170          
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: A0A1Y3NIN6_PIRSE (Tyrosine-protein phosphatase domain-containing protein n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y3NIN6_PIRSE)

HSP 1 Score: 197 bits (501), Expect = 2.200e-59
Identity = 91/163 (55.83%), Postives = 126/163 (77.30%), Query Frame = 1
Query:  109 SSVMFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPE 597
            +S  + PP++FGLVEE LYRS  PNE+N+P+LERLGLKT+++L P++  + + ++F++DQ++ L  LG        +W  + EEIVL AL+ I++  +YP+++ CN G+HRTGTV+ CLRKLQRWNLTSIFEEYRR+   KVR+ NEQFIELFDTDLV +PP+
Sbjct:    2 TSQHYIPPLNFGLVEEDLYRSGQPNELNFPYLERLGLKTVVFLAPEEP-NQKFLNFIDDQEIQLYHLGSTS---TSAWDNISEEIVLEALDLILNPENYPLIVMCNLGRHRTGTVIGCLRKLQRWNLTSIFEEYRRYAGPKVRLLNEQFIELFDTDLVRIPPQ 160          
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Match: A0A5J4YWC4_PORPP (Putative tyrosine-protein phosphatase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWC4_PORPP)

HSP 1 Score: 197 bits (501), Expect = 2.850e-59
Identity = 94/166 (56.63%), Postives = 125/166 (75.30%), Query Frame = 1
Query:  118 MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDS-VHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFV 612
            +  PP++FG+VEE LYRS +PNE+N+PFLERL L+ IIYL P+D +  Q ++F++DQ + L+ L    +K    W PV EE+VL AL+ I+D+  +YP+ I CN G+HRTGT+V CLRKLQRWNLT++FEEYRRF   KVR+ NEQFIELFDTDLV +P   P ++
Sbjct:   11 LLIPPINFGMVEENLYRSGMPNELNFPFLERLNLRKIIYLAPED-LTQQFLNFVDDQGIELLPLSWEGNK--SPWKPVSEEVVLTALDYILDANSNYPLYIMCNLGRHRTGTIVGCLRKLQRWNLTAVFEEYRRFAGPKVRLLNEQFIELFDTDLVRVPQNPPEWL 173          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ05_ECTSI6.340e-117100.00Tyrosine-protein phosphatase domain-containing pro... [more]
A0A835YIK6_9STRA2.070e-8071.76Protein-tyrosine phosphatase n=1 Tax=Tribonema min... [more]
A0A485KRG3_9STRA1.150e-6156.29Aste57867_10594 protein n=2 Tax=Aphanomyces TaxID=... [more]
F0ZWN6_DICPU5.180e-6159.26Tyrosine-protein phosphatase domain-containing pro... [more]
A0A1V9YB19_9STRA6.940e-6156.29Tyrosine phosphatase n=9 Tax=Saprolegniaceae TaxID... [more]
A0A139ANM7_GONPJ2.230e-6058.68Protein-tyrosine phosphatase n=1 Tax=Gonapodya pro... [more]
A0A7S2BN42_9STRA3.650e-6058.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
M4C493_HYAAE7.360e-6057.74Tyrosine-protein phosphatase domain-containing pro... [more]
A0A1Y3NIN6_PIRSE2.200e-5955.83Tyrosine-protein phosphatase domain-containing pro... [more]
A0A5J4YWC4_PORPP2.850e-5956.63Putative tyrosine-protein phosphatase n=1 Tax=Porp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig107contigE-siliculosus-1a_F_contig107:70560..73522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size504
Model size1009
Exons5
Ec32 orthologEc-07_004920.1
Ec32 ortholog descriptionProtein-tyrosine phosphatase, SIW14-like
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko01009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.T
EC3.1.3.48
EggNOG OGsCOG2365@1,KOG1572@2759
EggNOG free text desc.protein tyrosine phosphatase activity
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033554,GO:0034599,GO:0035335,GO:0036211,GO:0042221,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071704,GO:0140096,GO:1901564
KEGG koko:K18043
Preferred nameOCA1
Seed eggNOG ortholog2880.D7FJ05
Seed ortholog evalue1.1e-92
Seed ortholog score345.9
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927572.5140371-UTR-E-siliculosus-1a_F_contig107:70559..708841622927572.5140371-UTR-E-siliculosus-1a_F_contig107:70559..70884Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 70560..70884 -
1696318592.0483549-UTR-E-siliculosus-1a_F_contig107:70559..708841696318592.0483549-UTR-E-siliculosus-1a_F_contig107:70559..70884Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 70560..70884 -
1622927572.525286-UTR-E-siliculosus-1a_F_contig107:71315..713781622927572.525286-UTR-E-siliculosus-1a_F_contig107:71315..71378Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 71316..71378 -
1696318592.0607731-UTR-E-siliculosus-1a_F_contig107:71315..713781696318592.0607731-UTR-E-siliculosus-1a_F_contig107:71315..71378Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 71316..71378 -
1622927572.5754004-UTR-E-siliculosus-1a_F_contig107:73405..735221622927572.5754004-UTR-E-siliculosus-1a_F_contig107:73405..73522Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 73406..73522 -
1696318592.1014428-UTR-E-siliculosus-1a_F_contig107:73405..735221696318592.1014428-UTR-E-siliculosus-1a_F_contig107:73405..73522Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 73406..73522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927572.5344453-CDS-E-siliculosus-1a_F_contig107:71378..714681622927572.5344453-CDS-E-siliculosus-1a_F_contig107:71378..71468Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 71379..71468 -
1696318592.0685244-CDS-E-siliculosus-1a_F_contig107:71378..714681696318592.0685244-CDS-E-siliculosus-1a_F_contig107:71378..71468Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 71379..71468 -
1622927572.5449557-CDS-E-siliculosus-1a_F_contig107:71872..719581622927572.5449557-CDS-E-siliculosus-1a_F_contig107:71872..71958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 71873..71958 -
1696318592.0759854-CDS-E-siliculosus-1a_F_contig107:71872..719581696318592.0759854-CDS-E-siliculosus-1a_F_contig107:71872..71958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 71873..71958 -
1622927572.5542397-CDS-E-siliculosus-1a_F_contig107:72201..723801622927572.5542397-CDS-E-siliculosus-1a_F_contig107:72201..72380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 72202..72380 -
1696318592.083498-CDS-E-siliculosus-1a_F_contig107:72201..723801696318592.083498-CDS-E-siliculosus-1a_F_contig107:72201..72380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 72202..72380 -
1622927572.565313-CDS-E-siliculosus-1a_F_contig107:73256..734051622927572.565313-CDS-E-siliculosus-1a_F_contig107:73256..73405Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 73257..73405 -
1696318592.09327-CDS-E-siliculosus-1a_F_contig107:73256..734051696318592.09327-CDS-E-siliculosus-1a_F_contig107:73256..73405Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 73257..73405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig107.504.1prot_E-siliculosus-1a_F_contig107.504.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig107 71379..73405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig107.504.1

>prot_E-siliculosus-1a_F_contig107.504.1 ID=prot_E-siliculosus-1a_F_contig107.504.1|Name=mRNA_E-siliculosus-1a_F_contig107.504.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=168bp
MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQL
VSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLI
TCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELF
DTDLVHLPPEAPRFVNR*
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mRNA from alignment at E-siliculosus-1a_F_contig107:70560..73522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig107.504.1 ID=mRNA_E-siliculosus-1a_F_contig107.504.1|Name=mRNA_E-siliculosus-1a_F_contig107.504.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2963bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:70560..73522- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCGTTCACCAACTCATGCACTCACCCCACATGTGCCTCGCCCACTCAC TCGACCTTGCTGATTAGCTTGCGAAGGGGGGAGTGCACTCTGGTGGTGAG CAACAGCCAGCAGCGTGATGTTTTTCCCTCCTGTGAGCTTTGGTCTCGTT GAGGAGGGTCTCTACCGGTCCGCATTACCCAACGAAATCAACTACCCCTT CCTAGAGCGGCTAGGTCTGAAGACCATCATCTACCTATACCCGGACGACG ATATCGATGCACAGCTGTGAGTTTTGTAGAAAAAGCCTTGTACAGATTTC CTATAAAAAAAAGGCGTCGCCGCCAGCAGCGCACATCTTGACGTGTGTGA CGCCAGAATTCACGGGCTGCGTGTATTTTGAGCTGTTTACATGTAAATGG TATGATATGCCAGGATATGCGTACAACCATTGTATGGACGTATCTTTACA TGGGATATATTACGTACCAGGTCCACAATATCCATCTCTATGCATACAAC CTCTATGATATGCGTATAATACGGGAGAGAACCTCTGTGATACTTGGCAT GCGCTTGTGTGGCCTGTACGTGCGAGCCCACTCAAATAAGCAGTTCGTGC GATCCCACCGATTAGTCAATGAGTCAATGAGGGTGATCAACGTTATATCC TGTGTACAGAGTACGCCCGCACTTGAGAACCTCTAGGGTCGGTCGAGGCT GGTTCTTAGTTCCTAGGGTCATGCTACGAATGGTCGCCATATAGGTTTTA GTGTAGGGTTTCTTAACCGAGCTCACAAATGGTGCTCAAGTTCTCAAATA TTGTTGTTTTTTTAGCTCAATTTCTGGAACTCCTGGGTTCTAAGTGCGGG CGCGTTCTTGTATTCGTGTATTGTATGCATAGCTATCGTTGGTTGCGCAG GCAGAGACATCCCACGTAAGGAAGCACTTCGTGCGATCTCCAACCGATTA ATCAATGAGGGTGATCAATGATTATCTTGTTTATTCGTGTATTGATGCAT AGCTATCGGTGGTCCCGCAGGCAGAGACAGAGAGAGTGACGTCGGTTGGC ACACTCGTGCTCAATCAACCAAGCTTGGTTCAACCGAGGTAGGCCGACCA CTCTTCCTTTTACCATGTTTTTGCGCTTCTCCACGTGCTTAGGGTGAGTT TTCTGGAGGACCAAGACGTGACTCTGGTATCCCTAGGAGAACACGACGAC AAGCGCAACAAGAGTTGGGCACCTGTTGGAGAGGAGATCGTGTTGGCGGC CCTCGAACGCATTGTGGACTCTGTTCATTATCCAGTTCTTATAACGTGCA ACACTGGCAAGCACAGGACGGGTGAGAAGCAAATGCTGTCATCGTGGTAC ACCTGTCGGTTAGCTTGTTCGTTGTCGTTGCCACAGGTCCTTGTTGGTTT TACTACTGCTGTACACCGGTAGCCAAGCCTGAGAAACAGGTGCCTGGTAC CATAGGACAAGGTAGCGATGATCGTGCGCAGCGAATGATCAGGTAGCACA GCAGCATTCATGACCCACGTTGTGCCAATTCTATTTTGCACAACATGGTC TGATTGCTGCAAAGGAACGGTGGTGGCGTGCCTTCGGAAACTTCAGCGAT GGAATTTGACATCAATCTTTGAGGAGTACCGTCGGTTCACCAAACACAAG GTGCGGTTCTACCCTGTTTCCCATATGATCGTTCGCGGATGTAAAGCGAG CTGGAGTTTTGGTACTCAGGAGATTTCATGGTCATGCCTTCACGTGTGCG ACGTCTCCCTTTGATGTTTGCGTCGTAGAGCACCTCTTCCATGAATATGC CATGCCATGTCAGACACCCTCAAGTGATCCCTTTTTCGGAGAGTCAGGCT GAAGATTGGCTACAACAGAAGACCAATAATTTATCATTTACGTTGTGTTT TGTAGCATTGCGTACGTTGCCGAATCCCCCCGTTGTTTGTGTTTGTTCGT CTCGCTACCCCAGTTTAGGATGGCCGAAAACATGTGTGACTTTTACTTTT CTCGATCGCAGTGCACGATTTTCGCGCTCTCCGGCATTCGTTGTTCGCGT TCAGGTCAGAGTACAGAATGAACAATTTATCGAGCTTTTCGACACGGATC TGGTGCACCTTCCACCGGAGGCTCCACGATTTGTAAATAGATGAAGCGGC CAGGTAGCTTGATGGGATGCACCAACACCAGCACCTACGATCGAGAGAAC CTTCAAGGTAAGAGGGCGGATTAGGCGTTCAATTTAGTGGTGTGTCCTCG CTGTTCCTGCCGACTGCCTGAGAGGAATATGGTACCTGCCCTCCTCTTCC GATTCCCTGCTGTTGTGCATGCCTGGTTTACTGCTCTGAGGGATTACGCT AAAGAGGCAGAAGCTGTTCTAATCATTTGGTTGATTTATTAGTTGACACA CGCATCGCATCTGCCAACAATCATGTTGGTTGTCGATGTGTTCTGGAGGG ATTCACGTTATTGGATCTGTTTGGTCTCAATTTAGGCATGCTCCAAGTAA ACGTGAAGACACCCAAGGCGTTTGCTCTTGATGAGTTCGTTTGATGCGGC GTCAGTCACGCCAAATGTTTAGTAGGTCAGACAAGAAGCGCCTATCTTAC TTAATGTCTATTTTTTTTACATTTTGTTTCCGATGCAGGTGTTTCCAGGC TGATCGTCGCTGTACGGTTCTGGGCAGCAATTCGGTAGGGGTTTTCGAAG CCCCTCGGTAACCGGACGCAGTGGAGAGTCAAGACCTGTTCTAGTCATCG TAGGAAACGATTATAGAGCATAGTTTGCCAGCATTGCTTGGCTCGTACGT TTGGGCCTTGGTAGGCATGTTGTAAGGTTTGAGTGTGTTGACGATCGATA CCGGGGTCTCTGCACGCGCCAACTAAGATACCATGATACCATGGTTTCGC AAAAATGCAACCTACAGCAGTGTTTCCTTCCAGCATTGGGGAAACAACAG GTGACCCCCGCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:70560..73522-

>mRNA_E-siliculosus-1a_F_contig107.504.1 ID=mRNA_E-siliculosus-1a_F_contig107.504.1|Name=mRNA_E-siliculosus-1a_F_contig107.504.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:70560..73522- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTTTCCCTCCTGTGAGCTTTGGTCTCGTTGAGGAGGGTCTCTACCG
GTCCGCATTACCCAACGAAATCAACTACCCCTTCCTAGAGCGGCTAGGTC
TGAAGACCATCATCTACCTATACCCGGACGACGATATCGATGCACAGCTA
TGTTTTTCCCTCCTGTGAGCTTTGGTCTCGTTGAGGAGGGTCTCTACCGG
TCCGCATTACCCAACGAAATCAACTACCCCTTCCTAGAGCGGCTAGGTCT
GAAGACCATCATCTACCTATACCCGGACGACGATATCGATGCACAGCTGG
TGAGTTTTCTGGAGGACCAAGACGTGACTCTGGTATCCCTAGGAGAACAC
GACGACAAGCGCAACAAGAGTTGGGCACCTGTTGGAGAGGAGATCGTGTT
GGCGGCCCTCGAACGCATTGTGGACTCTGTTCATTATCCAGTTCTTATAA
CGTGCAACACTGGCAAGCACAGGACGGGGTGAGTTTTCTGGAGGACCAAG
ACGTGACTCTGGTATCCCTAGGAGAACACGACGACAAGCGCAACAAGAGT
TGGGCACCTGTTGGAGAGGAGATCGTGTTGGCGGCCCTCGAACGCATTGT
GGACTCTGTTCATTATCCAGTTCTTATAACGTGCAACACTGGCAAGCACA
GGACGGGAACGGTGGTGGCGTGCCTTCGGAAACTTCAGCGATGGAATTTG
ACATCAATCTTTGAGGAGTACCGTCGGTTCACCAAACACAAGGAACGGTG
GTGGCGTGCCTTCGGAAACTTCAGCGATGGAATTTGACATCAATCTTTGA
GGAGTACCGTCGGTTCACCAAACACAAGGTCAGAGTACAGAATGAACAAT
TTATCGAGCTTTTCGACACGGATCTGGTGCACCTTCCACCGGAGGCTCCA
CGATTTGTAAATAGATGAGTCAGAGTACAGAATGAACAATTTATCGAGCT
TTTCGACACGGATCTGGTGCACCTTCCACCGGAGGCTCCACGATTTGTAA
ATAGATGA
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