mRNA_E-siliculosus-1a_F_contig107.502.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig107.502.1
Unique NamemRNA_E-siliculosus-1a_F_contig107.502.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: D7FJ03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ03_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 3.800e-52
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 2 
Query:   62 MSFPYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGGLGQAGR 334
            MSFPYHCD EVTFPSASLA IACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGGLG+AGR
Sbjct:    1 MSFPYHCDAEVTFPSASLATIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGGLGEAGR 91
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: K3WQ75_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ75_GLOUD)

HSP 1 Score: 96.7 bits (239), Expect = 8.860e-22
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:   71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
            PY CD+ + FP A  AA A  TL VDAELQP+KI RTL VEG++L+  FEATE R LR  +S FYDM  +VART LEF +
Sbjct:    6 PYECDISLAFPEAVDAAYALETLRVDAELQPDKITRTLAVEGTNLVVHFEATEIRLLRAAVSSFYDMGLLVARTLLEFKE 85
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A2D4BZ60_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZ60_PYTIN)

HSP 1 Score: 91.7 bits (226), Expect = 7.220e-20
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:   59 TMSFPYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
            T + PY C++ ++FP A  A  A  T+ VD ELQP KI RTL V GS L+  FEATE R LR  +S FYDMA +V+RT LEF D
Sbjct:    2 TATHPYECEIALSFPEAEDAQHAMMTIQVDEELQPEKIHRTLSVNGSDLIVHFEATEIRLLRAAVSSFYDMALLVSRTLLEFKD 85
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A5D6XF77_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF77_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.750e-19
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:   71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
            P+ CDV++ FP+   A  A  TL VD E+QP+KI RTL V+G++L A FEATE R LR  ++ FYDMA +VART LEF +
Sbjct:    6 PFECDVQLVFPAPLDAQYALETLQVDGEIQPDKIHRTLAVDGAALTAHFEATEIRLLRAAVASFYDMALLVARTLLEFKE 85
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A835YW33_9STRA (Transcription factor Pcc1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW33_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.630e-18
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:   71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGG 316
            PY C +E+ +PS + AAIA  ++ VD ELQPNK+ RTL ++G+ L+A+F ATEA+ LRV +S F D A++V+RT LEFD+ G
Sbjct:    5 PYVCKLELRYPSEATAAIAKASMEVDEELQPNKVSRTLELDGNKLMAQFAATEAKVLRVSVSTFCDTAALVSRTMLEFDETG 86
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A8K1CRT8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRT8_PYTOL)

HSP 1 Score: 87.4 bits (215), Expect = 2.870e-18
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:   71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
            PY CD+ ++FP A  A  A  T+ VD ELQP+KI R+L V+G+ L+  FEATE R LR  ++ FYDM+ +VART LEF +
Sbjct:    7 PYECDIRLSFPEAEDAEHAMLTIQVDEELQPDKIHRSLSVDGTDLIVHFEATEIRLLRAAVASFYDMSLLVARTLLEFKE 86
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A024TZ00_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZ00_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.570e-16
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:   71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
            PY C++ +TF S   AA A  TL VD E+ P+KI + LRV+   L+A F A E R LR   S FYDMA VV R  LEFDD
Sbjct:    6 PYDCEIVLTFGSTDAAAHALATLNVDEEISPDKITKELRVQDKKLIAHFWANEIRMLRAAASSFYDMALVVTRVLLEFDD 85
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A6G0X3D3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3D3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.350e-15
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:   71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
            PY C++ +TF SA  AA A  TL+VD E+ P+KI + L V+ + L+A   A E R LR   S FYDMA VV R  LEFDD
Sbjct:    6 PYECEIVLTFGSADAAANALATLSVDEEISPDKITKELTVQDNRLIAHIWANEIRMLRAAASSFYDMALVVTRVLLEFDD 85
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A3R7ZLV6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ZLV6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.190e-14
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 2 
Query:   83 DVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
            ++ +TF S+  A  A  TL VDAE+ P+KI + LRV+G+ L+A F A E R LR   S FYDMA VV R  LEFDD
Sbjct:    8 EIVLTFGSSDAAVHALATLNVDAEISPDKITKELRVQGNQLIAHFWANEIRMLRAAASSFYDMALVVTRVLLEFDD 83
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BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A484E6M7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E6M7_BRELC)

HSP 1 Score: 77.4 bits (189), Expect = 1.940e-14
Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 2 
Query:   47 SNCETMSFPYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEF 304
            SN  T+  P+ C + + F     A    RTL VD ELQP KIIRTL V+G+ LL    ATE R LR  +S FYDM+ + ART LEF
Sbjct:    9 SNSATL--PFECKMTLRFTDKLDALYVLRTLEVDEELQPKKIIRTLTVKGTELLVHIAATEIRLLRAAVSSFYDMSMLSARTLLEF 92
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ03_ECTSI3.800e-5296.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WQ75_GLOUD8.860e-2260.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BZ60_PYTIN7.220e-2054.76Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6XF77_9STRA3.750e-1955.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A835YW33_9STRA2.630e-1853.66Transcription factor Pcc1-domain-containing protei... [more]
A0A8K1CRT8_PYTOL2.870e-1852.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TZ00_9STRA3.570e-1652.50Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A6G0X3D3_9STRA1.350e-1551.25Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A3R7ZLV6_9STRA1.190e-1452.63Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A484E6M7_BRELC1.940e-1450.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig107contigE-siliculosus-1a_F_contig107:61965..63986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size276
Model size902
Exons3
Ec32 orthologEc-07_004940.1
Ec32 ortholog descriptionCTAG/Pcc1 family
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03016
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CYNW@1,2S5DA@2759
EggNOG free text desc.Transcription factor Pcc1
KEGG koko:K15902
Seed eggNOG ortholog2880.D7FJ03
Seed ortholog evalue4.7e-42
Seed ortholog score176.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig107.502.1prot_E-siliculosus-1a_F_contig107.502.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig107 62530..63925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927572.2639742-UTR-E-siliculosus-1a_F_contig107:61964..625291622927572.2639742-UTR-E-siliculosus-1a_F_contig107:61964..62529Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 61965..62529 -
1696318591.9069538-UTR-E-siliculosus-1a_F_contig107:61964..625291696318591.9069538-UTR-E-siliculosus-1a_F_contig107:61964..62529Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 61965..62529 -
1622927572.3457274-UTR-E-siliculosus-1a_F_contig107:63925..639861622927572.3457274-UTR-E-siliculosus-1a_F_contig107:63925..63986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 63926..63986 -
1696318591.9581525-UTR-E-siliculosus-1a_F_contig107:63925..639861696318591.9581525-UTR-E-siliculosus-1a_F_contig107:63925..63986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 63926..63986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927572.3095849-CDS-E-siliculosus-1a_F_contig107:62529..626561622927572.3095849-CDS-E-siliculosus-1a_F_contig107:62529..62656Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 62530..62656 -
1696318591.9259553-CDS-E-siliculosus-1a_F_contig107:62529..626561696318591.9259553-CDS-E-siliculosus-1a_F_contig107:62529..62656Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 62530..62656 -
1622927572.3246064-CDS-E-siliculosus-1a_F_contig107:63431..635601622927572.3246064-CDS-E-siliculosus-1a_F_contig107:63431..63560Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 63432..63560 -
1696318591.9395125-CDS-E-siliculosus-1a_F_contig107:63431..635601696318591.9395125-CDS-E-siliculosus-1a_F_contig107:63431..63560Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 63432..63560 -
1622927572.3348935-CDS-E-siliculosus-1a_F_contig107:63905..639251622927572.3348935-CDS-E-siliculosus-1a_F_contig107:63905..63925Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 63906..63925 -
1696318591.9482217-CDS-E-siliculosus-1a_F_contig107:63905..639251696318591.9482217-CDS-E-siliculosus-1a_F_contig107:63905..63925Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 63906..63925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig107.502.1

>prot_E-siliculosus-1a_F_contig107.502.1 ID=prot_E-siliculosus-1a_F_contig107.502.1|Name=mRNA_E-siliculosus-1a_F_contig107.502.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=92bp
MSFPYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLA
KFEATEARTLRVVLSGFYDMASVVARTFLEFDDGGLGQAGR*
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mRNA from alignment at E-siliculosus-1a_F_contig107:61965..63986-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig107.502.1 ID=mRNA_E-siliculosus-1a_F_contig107.502.1|Name=mRNA_E-siliculosus-1a_F_contig107.502.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2022bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:61965..63986- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAAGGGCATCAAAGAGAACGGATACCTTGAACTGCCCCTCTGTTGGTCGA
ATTGCGAGACAATGAGCTTTCCGTATCACTGGTGAGTGCATCTCGTCCTA
CATATGCATACAAAGCAATCTAGACTACTTGGATAAGACTATTAGTTGTT
CCAAGGGTGTTCCCGCCAGCCCCGTATGACTTTGCGTGGGCGGCATCTGC
TTTGGCGAACCATCGATGTGATTATGTCTTCTTTGCCGCACGACTCTTGA
ACGTAGTTCGCTGAACGGATCAAGGGCTGTATGTCCTTGGATCGTTTTCA
GTTACGTAGATACTTTGTATTGAGGAAATAACCTAACGCGTCATATCCGT
ATGCAAAGTTCTCCCGCATGTGCTCTGTTTTGATTGCACGTGTTCGCTTG
GCCGTCTTATTCTGGGGGGCCTACAGTGACGTCGAGGTCACCTTCCCATC
AGCGTCGCTGGCGGCAATAGCTTGCAGAACTCTGGCTGTGGACGCAGAGT
TGCAGCCAAATAAAATCATCCGAACTCTTCGCGTGGAAGGATCATCCCTC
TTGGCGTAAGTGTCATGTTTGTTCCTCCACACAGCCATGCTTGTTGCGCA
CAATACAACACCTAGACCTTAGTACTTTTGGAGCTCTCACTGACGATAAA
AGCTTTTGTGCGGGTCTCCGCCAATGGTACGACAACTCGTTGAACACATA
TAGAGTAGATGACGATCTGCTTCCACAACGCAATAATCGAGACGATTGCA
AGAAAGATCCCTTGGGAGAGGAAGCCGATCGGGCTTTGATGTAGCGACCT
GCTGTATAGCCTAACACACCCGCGTTCAACAGCCTACGTAGTCTCGGCGT
GCAAACTTGTTTTTGAGTGACAGAGAGTGCTTGGAATAGGAGTTCGCCGC
TCCACATCCTTGCTTCTCGACCATGACGTCCGTTCCAGGATTCGAGCAAA
TTGATGGAAGCGCACATATACTGGCGGTCATCCCATGTGGCGCTCCCGCC
CGTGCCCTCTTTACAGGCCTCCTACTCTTCAGGAAGTTCTCCTATTTGAT
GGACGCATGGGCATTCGCTTCCATATGGCAACCTTGTCCACTCCTAATAA
AGAACTTTGGCTCCCAAGCAGCGAACCATACTTGGCGAAACACACAACAC
AGATGGATGCACACTGTAGATCAACACGAAAGCAAGTGCTAGGGTTGATG
GTAGCTTATTCACCACAGTATGGCGGTGTCGTTTCACATCAAGTTGGAGG
TATACACAACTCACGGTTACCGTCAGGTAAATCACGTTCCATGCACGCCC
TTGCAACCTGTTTTACTTTCCAAACTCAAGGAAGTTCGAGGCGACAGAAG
CACGTACACTTCGCGTTGTCCTGTCCGGATTTTACGACATGGCTTCGGTG
GTGGCAAGAACGTTCTTGGAGTTCGATGATGGGGGTCTCGGTCAAGCAGG
TCGATGATTGCAAACGGACACTTTGTTGGCTTTAGCACCAGCTGTGTGCG
AGAGAGAGAGAAAGCTGCCAGCAGGTCGCCTACGAGAACTTCTCTGCCAT
CGCGCACGAAGCGATGGGTGTATACGTGGGTTCAACGCACGCCTCGTCGG
ATTGCCGAGCTGGCGGTGTGCATCGAAGGCAAATGGAAGTGAACTGTTCA
GGGTTTTAAAATAGCATGTACGCCAGCAGTTAGAGTAGTCTCCCGTTGTT
CTTTCTAGAAATGTTTTTTCTCGTCATCTGCCGTCCCGCTCGCTACCTCC
ACAAATCCAGTGTTGAATGAGAGGGAGGGACGGAATGTGCACGATTGAGG
GGACGAACCGAGGGGGAAGTCACTAGCGTCATACGTGCGCACTGGAAGGT
GCTCTGGAGACGGGACGCAGACGATGGGAATGGGATAGAAACATTTGAAG
AGGAAGAAAACGTCGTTCCGGACATAGGGAGTGAAAAGTTGCAATTCTGT
GATGGAAAGCAATATATTCGGGGGGTATATACAATACAGTAAAGGGGAAG
AAACTGCTGAACCTATCCCGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:61965..63986-

>mRNA_E-siliculosus-1a_F_contig107.502.1 ID=mRNA_E-siliculosus-1a_F_contig107.502.1|Name=mRNA_E-siliculosus-1a_F_contig107.502.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:61965..63986- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCTTTCCGTATCACTGATGAGCTTTCCGTATCACTGTGACGTCGAG
GTCACCTTCCCATCAGCGTCGCTGGCGGCAATAGCTTGCAGAACTCTGGC
TGTGGACGCAGAGTTGCAGCCAAATAAAATCATCCGAACTCTTCGCGTGG
AAGGATCATCCCTCTTGGCTGACGTCGAGGTCACCTTCCCATCAGCGTCG
CTGGCGGCAATAGCTTGCAGAACTCTGGCTGTGGACGCAGAGTTGCAGCC
AAATAAAATCATCCGAACTCTTCGCGTGGAAGGATCATCCCTCTTGGCGA
AGTTCGAGGCGACAGAAGCACGTACACTTCGCGTTGTCCTGTCCGGATTT
TACGACATGGCTTCGGTGGTGGCAAGAACGTTCTTGGAGTTCGATGATGG
GGGTCTCGGTCAAGCAGGTCGATGAGAAGTTCGAGGCGACAGAAGCACGT
ACACTTCGCGTTGTCCTGTCCGGATTTTACGACATGGCTTCGGTGGTGGC
AAGAACGTTCTTGGAGTTCGATGATGGGGGTCTCGGTCAAGCAGGTCGAT
GA
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