Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17308.1 vs. uniprot
Match: D7FKR4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKR4_ECTSI) HSP 1 Score: 132 bits (332), Expect = 4.410e-30 Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 0 Query: 478 RLSRRVEVLQSIGVQINFTDHLWLVSSATTLRFNRWVEKVLMHDVGAIRRGDAEVERRMKSCRAMLRGT 546
RLSRRVEVLQS+GVQINFTDH+WLVSSATTLRFN+WVEKVLMHDVGA+ RGDAEVERRMKSCRAMLRGT
Sbjct: 347 RLSRRVEVLQSLGVQINFTDHVWLVSSATTLRFNKWVEKVLMHDVGAVHRGDAEVERRMKSCRAMLRGT 415
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 403..423 |
| None | No IPR available | PANTHER | PTHR13068 | CGI-12 PROTEIN-RELATED | coord: 192..418
coord: 275..489
coord: 91..369 |
| IPR003690 | Transcription termination factor, mitochondrial/chloroplastic | SMART | SM00733 | mt_12 | coord: 242..273
e-value: 0.0065
score: 25.7
coord: 389..420
e-value: 4.3E-4
score: 29.6
coord: 425..456
e-value: 0.089
score: 21.9
coord: 316..348
e-value: 0.014
score: 24.6
coord: 133..164
e-value: 3100.0
score: 0.1
coord: 205..237
e-value: 2.0E-4
score: 30.7
coord: 279..311
e-value: 0.033
score: 23.3
coord: 169..200
e-value: 0.027
score: 23.6
coord: 353..384
e-value: 0.13
score: 21.3
coord: 461..492
e-value: 0.031
score: 23.4 |
| IPR003690 | Transcription termination factor, mitochondrial/chloroplastic | PFAM | PF02536 | mTERF | coord: 124..268
e-value: 5.9E-17
score: 61.6
coord: 197..492
e-value: 4.4E-46
score: 157.2 |
| IPR038538 | MTERF superfamily, mitochondrial/chloroplastic | GENE3D | 1.25.70.10 | | coord: 81..232
e-value: 6.6E-21
score: 76.7
coord: 345..511
e-value: 7.2E-32
score: 112.6 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_E-siliculosus-1a_M_contig92.17308.1 ID=prot_E-siliculosus-1a_M_contig92.17308.1|Name=mRNA_E-siliculosus-1a_M_contig92.17308.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=547bp
MHVAWVLAGLAPQHTIFWQASQKHTSTLGSRPSQQYHRGKSMEPRHLPRV
PDFFGPRRRSRLSTSTDDSEAEDAELVHMDKLRDKMNSLGVGLSPSEASH
LLATNASIVDGDFSTSAIGLLSRTLGLSPREMVEIVAGRPAIAKSPVDTL
ERQLGFYLDVVKLSKQDLKTLVIKDPTILRLSLSNLREKMRFFTEDLGFR
RLQVAKVILQTPHILGSSVENKMRPNVAYLEGALGVPRRDIRRYIVALPN
LLSYSVEENLRPKVEWLEARLFLGQDQLRKLLRKRPQVWSLSVENNLNPK
IRWLEETVGVNDVALRDMVLKNPSLLLYNIDTGIKDKMSFFSSELGVEEA
QVMKILVRSPMLLSYSLESMRRKVSYFEEGLQLGANDVSSLISRCPQVLG
YSIDRIESKLTFLMQALNASREEVTSIALRYPQVLNLSVTNLRGKVNFYT
QEIGGSIEEVRAVIIGSPSLLGYSLTNRLSRRVEVLQSIGVQINFTDHLW
LVSSATTLRFNRWVEKVLMHDVGAIRRGDAEVERRMKSCRAMLRGT* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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