prot_E-siliculosus-1a_M_contig91.17217.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig91.17217.1
Unique Nameprot_E-siliculosus-1a_M_contig91.17217.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length263
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 493 bits (1268), Expect = 1.340e-175
Identity = 259/262 (98.85%), Postives = 260/262 (99.24%), Query Frame = 0 
Query:    1 MPTVRRRSFAIMASALCGAAGLTRVQGFCVVPALTGSNARCHGATAERQATQQAQQGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQGYPRREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQPKYAEEVGYDDXXXXXXXADLF 262
            MPTVRRRSFAIMASALCGAAGLTRVQGFC VPALTGSN RCHGATAERQATQQAQQGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQGYPRREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQPKYAEE+GYDDXXXXXXXADLF
Sbjct:    1 MPTVRRRSFAIMASALCGAAGLTRVQGFCFVPALTGSNTRCHGATAERQATQQAQQGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQGYPRREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQPKYAEEIGYDDXXXXXXXADLF 262
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: W7TTT9_9STRA (Rnp-1 like rna-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.250e-14
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 0 
Query:   61 TMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAI 173
            TM+ G S     G    +IG + + R+ +     P ++M+SNL +  +  ++  F S AG V  VK++       SKGYGFV F +PL+AT A+E L+G EL GR ++++PAI
Sbjct:   34 TMKVGKSSSTGRGK---SIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILDRETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAI 143
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: A0A7S2V4S3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4S3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.660e-10
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 0 
Query:   86 RKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPA 172
            RK V  +   CKV +SN  Y+ TE ++ E+CS AG V  VK++K  + K S+GYG+V++     AT AI  LN  +L GR V +  A
Sbjct:   73 RKNVFNA---CKVHVSNFPYTTTEEELREWCSQAGEVFAVKIIKNQWTKKSQGYGYVEYTISPYATAAINFLNETQLGGRTVYIAEA 156
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: B8LC97_THAPS (RNA binding protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC97_THAPS)

HSP 1 Score: 64.3 bits (155), Expect = 1.620e-9
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 0 
Query:   94 EPCKVMISNLDYSLTENDVAEFCSTA-GAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLN---GKELKGRVVEL 169
            +P KV I NL +  TE DV +  +T  G +  VK+V+ W +  SKGYGF+ F +P+ AT A++++N   G  +KGR + L
Sbjct:   13 DPNKVFIGNLPFDATEEDVNQLFATHWGRIESVKIVRDWKSGKSKGYGFIQFYEPMVATSAMKSVNEGKGLRIKGRPIRL 92
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: UPI0019E9B91D (RNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E9B91D)

HSP 1 Score: 63.5 bits (153), Expect = 2.280e-9
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0 
Query:   98 VMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKR 179
            + + NL Y +TE D+ +     G V  + ++K  Y+  SKG+GFV+      A  AIE LNGKELKGR++++  A    E R
Sbjct:    3 IYVGNLSYEVTEEDLKQAFGAFGQVESINIIKDKYSGESKGFGFVEMPAKAEAQSAIEGLNGKELKGRMLKVSEARPRSESR 84
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: A0A3N5SIC5_9SPIR (RNA-binding protein n=2 Tax=Bacteria TaxID=2 RepID=A0A3N5SIC5_9SPIR)

HSP 1 Score: 63.2 bits (152), Expect = 2.730e-9
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 0 
Query:   98 VMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRR 180
            + + NL YS+TE+D+ +     G VA V ++K  ++  SKG+GFV+      A  AI  +NGKELKGR + +  A    + RR
Sbjct:    3 IYVGNLSYSVTEDDLKQAFEAFGQVASVSIIKDKFSNQSKGFGFVEMPTQEEAQAAISGMNGKELKGRAMNVNEARPRTDDRR 85
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: A0A661LRS4_9DELT (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661LRS4_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 2.800e-9
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0 
Query:   98 VMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKR 179
            + + NL Y +TE D+ +    +G V  V+++   Y+  SKG+GFV+      A  AI+ LNGKELKGRV+ L  A    E R
Sbjct:    3 IYVGNLSYEVTEEDLRQAFEQSGQVESVRIIMDKYSGRSKGFGFVEMPSNHEAQAAIKGLNGKELKGRVLNLNEARPRTENR 84
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: A0A8J6P332_9DELT (RNA-binding protein n=1 Tax=Candidatus Desulfatibia vada TaxID=2841696 RepID=A0A8J6P332_9DELT)

HSP 1 Score: 63.5 bits (153), Expect = 2.970e-9
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 0 
Query:   98 VMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRR 180
            + + NL Y +TE D+ E     G V  VK++K  Y   SKG+GFV+      A  AIE LNGKELKGR + +  A    E RR
Sbjct:    3 IYVGNLSYEVTEEDLKEAFEVFGEVDTVKVIKDNYTGRSKGFGFVEMSVKAEAQSAIEGLNGKELKGRSLNVNEARPRPEGRR 85
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: UPI00168AE54E (RNA-binding protein n=1 Tax=Treponema zioleckii TaxID=331680 RepID=UPI00168AE54E)

HSP 1 Score: 63.2 bits (152), Expect = 4.410e-9
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 0 
Query:   97 KVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAI 173
            K+ I NL +S TE  ++      G VA   ++K  + + SKG+GFV+    ++AT AI +LNGKE+ GR V +  A+
Sbjct:    3 KIYIGNLSFSTTEERLSSIFGEYGEVASATIIKDKFTEMSKGFGFVEMPDDVSATSAISSLNGKEIDGRKVRVNEAV 79
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Match: A0A448ZIF6_9STRA (RRM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIF6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.740e-9
Identity = 32/89 (35.96%), Postives = 53/89 (59.55%), Query Frame = 0 
Query:   86 RKRVLESEEPCKVMISNLDYSLTENDVAEFC-STAGA----VAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVEL 169
            RK   +  +PCKV + NL + + +ND+A+F   T G     +   K+++ W    SKGYGF++F  P+ AT+ ++  +GK L GR V++
Sbjct:   80 RKGTKKFVDPCKVFVGNLPFDVDKNDLAQFVLDTMGQNRMILHSFKVIEDWKTGKSKGYGFIEFTDPIFATVCMDVCDGKMLNGRPVKI 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig91.17217.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT74_9PHAE1.340e-17598.85RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7TTT9_9STRA6.250e-1438.05Rnp-1 like rna-binding protein n=2 Tax=Monodopsida... [more]
A0A7S2V4S3_9STRA2.660e-1042.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8LC97_THAPS1.620e-941.25RNA binding protein (Fragment) n=1 Tax=Thalassiosi... [more]
UPI0019E9B91D2.280e-939.02RNA-binding protein n=1 Tax=Proteobacteria bacteri... [more]
A0A3N5SIC5_9SPIR2.730e-938.55RNA-binding protein n=2 Tax=Bacteria TaxID=2 RepID... [more]
A0A661LRS4_9DELT2.800e-940.24RNA-binding protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A8J6P332_9DELT2.970e-943.37RNA-binding protein n=1 Tax=Candidatus Desulfatibi... [more]
UPI00168AE54E4.410e-938.96RNA-binding protein n=1 Tax=Treponema zioleckii Ta... [more]
A0A448ZIF6_9STRA4.740e-935.96RRM domain-containing protein n=1 Tax=Pseudo-nitzs... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 97..170
e-value: 1.0E-16
score: 71.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 98..167
e-value: 6.8E-17
score: 61.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 96..174
score: 15.511
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 44..185
e-value: 1.0E-21
score: 79.5
NoneNo IPR availablePANTHERPTHR45735FAMILY NOT NAMEDcoord: 96..183
NoneNo IPR availablePANTHERPTHR45735:SF2CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2coord: 96..183
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..262
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.578
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 93..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig91contigE-siliculosus-1a_M_contig91:365370..370028 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig91.17217.1mRNA_E-siliculosus-1a_M_contig91.17217.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig91 365365..370623 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig91.17217.1 ID=prot_E-siliculosus-1a_M_contig91.17217.1|Name=mRNA_E-siliculosus-1a_M_contig91.17217.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=263bp
MPTVRRRSFAIMASALCGAAGLTRVQGFCVVPALTGSNARCHGATAERQA
TQQAQQGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMI
SNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTA
TIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQ
GYPRREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQPKYAEEVGYD
DDDDDDDDADLF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom