prot_E-siliculosus-1a_M_contig90.17143.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig90.17143.1
Unique Name	prot_E-siliculosus-1a_M_contig90.17143.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	584

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig90.17143.1 vs. uniprot
Match: D8LKK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK6_ECTSI)

HSP 1 Score: 659 bits (1701), Expect = 3.580e-233
Identity = 418/466 (89.70%), Postives = 421/466 (90.34%), Query Frame = 0

Query:  125 MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRTIKTRAIQWALEDRRDHANGGGIKYIGDKITQQMSRYATFKVDPNRPQTIEVTPIDEWWQFKKARKDTGKNMTVKEAEELMKKQENFLGPLSLANKILGKKSLEAAAKEKADKSRYGGLDHEDTQASKPRLTSFCSNGPGTSTSVLKEAGMKLASPEDAQAVDGFGDGSGSDGGAGEIEKGEVDSDAGGEDDDFGDEVRSDXXXXXXXXXXXXXXXXXXXXXXXLNDXXDEHLTDDEHHELQKLSRSVNAEGGHVEEEDDYTVSGDIGRASPTVPPPGNPKPAAGAPAGDGADXXXXXXXXXXXS---GKRGASAMEVXXXXXXXXXXXRAEGKXXXXXXXXXX----KRARTAQKKGAQEINQANVVATLKRYGGRLASKALLGHFVAALKADGKKNKEAAVANLRAILKKVATKVDDAIEGTVWVLKKHFS 583
            MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRTIKTRAIQWALEDRRDHA GGGIKY GDKITQQMSRYATFKVDPNRPQTIEVTPIDEWWQFKKA KDTGKNMTVKEAEELMKKQENFLGPLSLAN+ILGKKSLEAAAKEKA++SRYGGLDHEDTQ                   VLKEAGMKLASPED QAVDGFGDGSGSDGGAGEIEKGEVDSDAGGEDDDFGDEVRSDXXXXXXXXXXXXXXXXXXXXXXXLNDXXDEHLTDDEHHELQKLSRSVNAEGGHVEEEDDYTVSGDIGRASPTVPPPGNPKPAAGAPAGDGADXXXXXXXXXXX    GKRGASAMEV    XXXXXXX     XXX   X  X    KRARTAQKKGAQEINQANVVATLKRYGGRLASKALLGHFVAALKADGKKNKEAAVANLRAILKKVATKVDDAIEGTVWVLKKHFS
Sbjct:    1 MYREQEAEEHSEDEDYEGPGKFDAFERPAFKRRTIKTRAIQWALEDRRDHAQGGGIKYTGDKITQQMSRYATFKVDPNRPQTIEVTPIDEWWQFKKAPKDTGKNMTVKEAEELMKKQENFLGPLSLANRILGKKSLEAAAKEKAEQSRYGGLDHEDTQ-------------------VLKEAGMKLASPEDTQAVDGFGDGSGSDGGAGEIEKGEVDSDAGGEDDDFGDEVRSDXXXXXXXXXXXXXXXXXXXXXXXLNDXXDEHLTDDEHHELQKLSRSVNAEGGHVEEEDDYTVSGDIGRASPTVPPPGNPKPAAGAPAGDGADXXXXXXXXXXXXXXXGKRGASAMEVGGGEXXXXXXXXXXXXXXXTGSXGEXXSGSKRARTAQKKGAQEINQANVVATLKRYGGRLASKALLGHFVAALKADGKKNKEAAVANLRAILKKVATKVDDAIEGTVWVLKKHFS 447

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig90.17143.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig90.17143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LKK6_ECTSI	3.580e-233	89.70	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction	SUPERFAMILY	50916	Rap30/74 interaction domains	coord: 149..241

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig90	contig	E-siliculosus-1a_M_contig90:329974..339183 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig90.17143.1	mRNA_E-siliculosus-1a_M_contig90.17143.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig90 329974..339183 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig90.17143.1 ID=prot_E-siliculosus-1a_M_contig90.17143.1|Name=mRNA_E-siliculosus-1a_M_contig90.17143.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=584bp
MPVPPSLYSVVSCACPPFGLSAFSIYAPSVIASRVAPIGTMSAAGAKARE
GSGARGGPAKKGPPKKGDDIVSVEEKVWTLRMGARDPPSNVARFEEIWVG
KGDSKRKVPRPPFDDPTVFSKPAYMYREQEAEEHSEDEDYEGPGKFDAFE
RPAFKRRTIKTRAIQWALEDRRDHANGGGIKYIGDKITQQMSRYATFKVD
PNRPQTIEVTPIDEWWQFKKARKDTGKNMTVKEAEELMKKQENFLGPLSL
ANKILGKKSLEAAAKEKADKSRYGGLDHEDTQASKPRLTSFCSNGPGTST
SVLKEAGMKLASPEDAQAVDGFGDGSGSDGGAGEIEKGEVDSDAGGEDDD
FGDEVRSDDEEEVGNDDANEGGGTLHQDDEDLNDSDDEHLTDDEHHELQK
LSRSVNAEGGHVEEEDDYTVSGDIGRASPTVPPPGNPKPAAGAPAGDGAD
SSAGGGGGGGGSGKRGASAMEVGGGEGGGSAGGRAEGKGSGGEGGSGSKR
ARTAQKKGAQEINQANVVATLKRYGGRLASKALLGHFVAALKADGKKNKE
AAVANLRAILKKVATKVDDAIEGTVWVLKKHFS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011039	TFIIF_interaction