prot_E-siliculosus-1a_M_contig9.17069.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17069.1
Unique Nameprot_E-siliculosus-1a_M_contig9.17069.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length450
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17069.1 vs. uniprot
Match: D7G4J1_ECTSI (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI)

HSP 1 Score: 542 bits (1396), Expect = 3.150e-191
Identity = 271/299 (90.64%), Postives = 280/299 (93.65%), Query Frame = 0
Query:  150 MSREGEWESALNMLQCIRDKGMKPSMSTHMDVIGVCRRALEWDQASKTYREMIEAHLTDHPFDDMACEDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLETEGNGDGD----VEWPKWPLKVGRTGGAILELHELTQSIALETVQVALLDVIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLRPEFQQRNEGCVELKPASLEAYIRRMKRRGAAA 444
            MSREG+WE AL MLQ IRDKGMKPSMSTHMDVI VCRRALEWDQASK YREMIEAHLTDHPFDDMAC+DYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSK KLNLFSFDLLITTVA+QGYKEVSTMLYELGVVDADRALLETEGN        VEWPKWPLKVGRTGGAILELH+LTQ IALETVQVALLDVIRRPLRRPYWSGDKRWRI+TGMGNNSKDREA+IKPAVVELLEDLGLRPEFQQRNEGCVELKPA+LEAYIRR   + +AA
Sbjct:    1 MSREGDWEGALEMLQRIRDKGMKPSMSTHMDVISVCRRALEWDQASKAYREMIEAHLTDHPFDDMACQDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKAKLNLFSFDLLITTVAKQGYKEVSTMLYELGVVDADRALLETEGNXXXXXXXXVEWPKWPLKVGRTGGAILELHDLTQGIALETVQVALLDVIRRPLRRPYWSGDKRWRIITGMGNNSKDREAIIKPAVVELLEDLGLRPEFQQRNEGCVELKPANLEAYIRRQVTKASAA 299          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17069.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 5.790e-39
Identity = 99/292 (33.90%), Postives = 152/292 (52.05%), Query Frame = 0
Query:  154 GEWESALNMLQCIRDKGMKPSMSTHMDVIGVCRRALEWDQASKTYREM---------IEAHLTDHPFDDMACEDYEDESNHVFARACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLETEGNGDGDVEWPKWPLKVGRTGGAILELHELTQSIALETVQVALLDVIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLRPEFQQRNEGCVELKPASLEAYIRR 436
            G+WE ++ +++ +RD    PS++ ++  I  CR+A E+D AS    +M         I+A+   HP      +     +  VF      +A M     I+P   TYRA++ L   E  W+ ++LL+EH +R+      F +D + + + + G+ E++TM++E  + D    L     N     E               L+LH  T S AL  V+V LLD+ R+P  R +    +   I+TGMGNNSKD EAVIKP V+ELL D+GL P   + NEGC+ L+PA L+AY+ R
Sbjct:  167 GDWEKSVQLIKAMRDSDFVPSVNAYVATIEACRKAGEYDHASTLLSDMNKVCLPEDLIKAYAAPHPNAPGVTQ-----TQKVFC-----LAMMMRQDKIEPFEETYRAIMGLASKEKLWQVSLLLVEHLKRNGLVPGKFVYDEICSVLFKTGHPEMATMIFEDALGDKIEEL-----NSFAPPE---------------LDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIKPRVMELLSDMGLEPSMMRNNEGCIVLQPADLQAYMAR 428          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17069.1 vs. uniprot
Match: A0A835YUL6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.240e-25
Identity = 99/352 (28.12%), Postives = 165/352 (46.88%), Query Frame = 0
Query:  131 PSVSRVDPAAAEQETTIKRMSREGEWESALNMLQCIRDKGMKPSMSTHMDVIGVCRRALEWDQASKTYREMIEAHLTDHPFDDMACEDYEDESNH----VFA-----------RACGIVAGMQADAGIKPNNGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLETEGNGDGDVE-WPKWPLKVGRTGGAILELHELTQSIALETVQVALLDVIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLE-DLGLRPEF----------------QQRNEGCVELKPASLEAYIRRMKRRGAAAAATPP 449
            P  +   P  A+    IK+ +  GEW  A+ ++  +R+  + PS+  + D I   RR LE+D+A     +M +A +    F   A  D  D S+     VFA               ++  M+ D  ++P+  TYRA++ +C  +  W  ++LLLEH R    +   F ++ + T +  +G  +++ ++YE       R+L      G+G  E W +   KV        +LH  T + A   V+ AL D++R+P  RP+        I+TG+G  S++  AVIKPA++++L  +L +  E                 Q+ N GCVE++P  L+A+ R   R  A  A T P
Sbjct:   13 PPGAEAAPETAKYNDAIKKYASGGEWAKAVVLIDKMREINLSPSIEAYGDTITALRRGLEFDRADALLADMYDACMPADLFAKYAAADPSDASSTQTQCVFALENXXXXXXXXXXXXLLLCMRTDQ-LEPDVDTYRAVMGMCTKDRLWHLSLLLLEHMRLRGVQPGKFIYNEICTVLDMEGKHDLAEIVYE-------RSL------GEGVFEPWIEDDNKV--------DLHSFTLNTARAAVRSALTDMLRQPSGRPFHDPAAPMHIITGVGRRSEEGVAVIKPAILDMLNVELQIPAEXXXXXXXXXXXXXXXXVQKHNPGCVEIQPQHLQAWAR--ARLAAVGATTDP 340          
BLAST of mRNA_E-siliculosus-1a_M_contig9.17069.1 vs. uniprot
Match: A0A812I2Z0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812I2Z0_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 1.180e-5
Identity = 60/216 (27.78%), Postives = 102/216 (47.22%), Query Frame = 0
Query:  247 NGTYRALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEVSTMLYELGVVDADRALLE--------TEGNGDGDVE-----WPKWPLKVGRTGG--------------AILELHELTQSIALETVQVALLDVIR-RPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKPAVVELLEDLGLRPEFQQRNEGCVELKPASLEAYI 434
            +GT+ AL ++ +   SW++ + +LE +  +  +L+  +  ++++  A Q   +   +L  LG+++A   +L+        T     GD+      + + PL+  R GG                L+LH L    A   V  ALLD    +P   P W       +VTG GN+S+  E+V++PAV++LL++LGL       NEG V L    L  +I
Sbjct:  322 DGTFNALCRVFEHNSSWQSCLQILEEASLAGPQLSQLTLSVVVS--ACQKSTKWHQVLQLLGMMEASGMVLDDVFQAAGMTSHVYMGDLATALAWYRERPLRGLRLGGRKAGAGWFEHGRRWGHLDLHGLQPEEARLAVCCALLDATMVKPGMLPSWG----LVLVTGRGNHSEG-ESVVRPAVLQLLKELGLAARVDPYNEGRVVLPARELLTFI 530          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17069.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4J1_ECTSI3.150e-19190.64Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G4I1_ECTSI5.790e-3933.90Predicted mitochondrial protein n=2 Tax=Ectocarpus... [more]
A0A835YUL6_9STRA3.240e-2528.13Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A812I2Z0_9DINO1.180e-527.78Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 54..81
NoneNo IPR availableGENE3D3.30.1370.110coord: 336..426
e-value: 3.9E-10
score: 41.6
IPR002625Smr domainPROSITEPS50828SMRcoord: 344..428
score: 13.962
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 343..423

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1675110..1682122 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17069.1mRNA_E-siliculosus-1a_M_contig9.17069.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig9 1675055..1683158 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig9.17069.1 ID=prot_E-siliculosus-1a_M_contig9.17069.1|Name=mRNA_E-siliculosus-1a_M_contig9.17069.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=450bp
MQLLIRRLAPGVNSRKTLACVLTPPPAGGTRRAITCFSAPSVAAPTTAPP
TQRYHQQQQRRQQQQQQRQQLQRQSRNLTSSDRHQAPRAVPKNVLRRRSS
TASEATAATAAAAEQQGGSHASAGGGAPPFPSVSRVDPAAAEQETTIKRM
SREGEWESALNMLQCIRDKGMKPSMSTHMDVIGVCRRALEWDQASKTYRE
MIEAHLTDHPFDDMACEDYEDESNHVFARACGIVAGMQADAGIKPNNGTY
RALLQLCKDEGSWEAAILLLEHSRRSKTKLNLFSFDLLITTVAEQGYKEV
STMLYELGVVDADRALLETEGNGDGDVEWPKWPLKVGRTGGAILELHELT
QSIALETVQVALLDVIRRPLRRPYWSGDKRWRIVTGMGNNSKDREAVIKP
AVVELLEDLGLRPEFQQRNEGCVELKPASLEAYIRRMKRRGAAAAATPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036063Smr_dom_sf
IPR002625Smr_dom