prot_E-siliculosus-1a_M_contig9.17055.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17055.1
Unique Nameprot_E-siliculosus-1a_M_contig9.17055.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length280
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17055.1 vs. uniprot
Match: A0A835ZJK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.450e-12
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 0 
Query:   39 CISDAVQDYCGNPSYHVGAVSMMFLVFVSTSSMVIMASTITCRCWVDSDPEKQAMLMVLTGSPY 102
            C+    + YC +P Y     SM+F+VF+ST +  +MA TI C+CW+D+DPEKQA++MV++ SP+
Sbjct:  330 CLDQQQESYCEDPKYRYAGASMIFVVFISTFAQAMMACTIGCKCWLDADPEKQALMMVVSSSPH 393
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17055.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZJK2_9STRA2.450e-1246.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 184..205
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 182..210
score: 8.787
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..279
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..59
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.485

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1594635..1597898 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17055.1mRNA_E-siliculosus-1a_M_contig9.17055.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig9 1580358..1597898 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig9.17055.1 ID=prot_E-siliculosus-1a_M_contig9.17055.1|Name=mRNA_E-siliculosus-1a_M_contig9.17055.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=280bp
MLFSVIVSTTCAFVKLHVDVCCASVQVSNLCTQFVDDCCISDAVQDYCGN
PSYHVGAVSMMFLVFVSTSSMVIMASTITCRCWVDSDPEKQAMLMVLTGS
PYGSPRGQPESPKFSPRNTVLSALRFGDTSGGRPANGGTPTRKPSHNQSV
TARGEGRHGSGPGLGGWEAGEEKSAAGPATREQCPQCGAVFGDVSTLLNH
VERFHPKATTVTGIPAPSRASVSSSSTMPESNSAGIGRDSGRVRPSLARK
GSTYEPDEGPVLTVYPPSVSVAPARPSLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type