prot_E-siliculosus-1a_M_contig9.17029.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17029.1
Unique Nameprot_E-siliculosus-1a_M_contig9.17029.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length871
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17029.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 557..577
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 610..630
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 689..710
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 246..266
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 578..609
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 656..661
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 273..293
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 267..272
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 313..334
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 552..556
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 636..655
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 294..312
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 526..551
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 662..683
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 711..870
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..245
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 335..525
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 631..635
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 684..688
NoneNo IPR availableTMHMMTMhelixcoord: 561..583
NoneNo IPR availableTMHMMTMhelixcoord: 529..551
NoneNo IPR availableTMHMMTMhelixcoord: 279..297
NoneNo IPR availableTMHMMTMhelixcoord: 245..267
NoneNo IPR availableTMHMMTMhelixcoord: 635..657
NoneNo IPR availableTMHMMTMhelixcoord: 662..684
NoneNo IPR availableTMHMMTMhelixcoord: 312..334
NoneNo IPR availableTMHMMTMhelixcoord: 608..630
NoneNo IPR availableTMHMMTMhelixcoord: 688..710

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:1268876..1271488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17029.1mRNA_E-siliculosus-1a_M_contig9.17029.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig9 1250613..1273358 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig9.17029.1 ID=prot_E-siliculosus-1a_M_contig9.17029.1|Name=mRNA_E-siliculosus-1a_M_contig9.17029.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=871bp
MAGTVGVADQGSTTQQQTVNSSPVSPGVPAGDATGQDQKRTGVDPPGSEG
ASIDGGAASMSDGSTDVAGSGSSRGTPAPISGIGDPEDPIRGRESTPSSA
GVGGDLGGGVAGEGVSMGAVPLFAPFSGPNSSGSPAGSGVAGRGRGVVGG
AQRQAKPQRAAMTNVGLRAASSGSSGSSSRNAAGVGRGQARSSSPVQLSR
LVRRGGPQPVGRIPMYGGSAVVPVQRVSTDEEEHMRWQKKHPAEAMSVPL
AVVVLIVNFVAGASVFSRDNHSLELEVPVCALIFIATFVAPIYTHMYQKR
PWYGDWSSRTHLAELVVVAGDLSARLGCVNALLLRFYPSKMRGEIGERIA
MTATYCKLWNWIVHVGRRRLGDDLNRESVQKSIGWLGASGYMSVDTDGKV
SANRDISWLVMTLNHCLEVNGLNRTDEQEVRLGLAGIAPLGEIVLPCVLA
AKTGPKVATGGTREVWMREDGVYWRISDSSIRMAWSWDNKGIGYVGGVLV
RVSRSDPSVGWRVAGRDGKALLRGDLTLPGVSLLASVVGYANTMFGVAFL
IGRELSLGYWVIFANTVGEVVAILIVAGPSLGLGDIRAWWVMADPTNGLR
ALTRSSRGNCMGILVVEALSSLAGAVFAAAGSGSAYVWGAAGAISGVIAV
VVGLTPGAIARVAVACLSVFVVGLLGEVVLLVSTERSDWLAWCVVVFSMG
EVVLLGLLWLDLVRASRTKRRVLGKENGTSERATNVIGEHPSLKAGEFDS
LGVGVGTPDPVLSVGSMRGSSEWPPSTVIRVGGFRDGIRSFHCDRVPQNI
ADISDGWMVLRETRDRPAEQSGSTNAHAFGFEFWGFLVKLANGGAHPILG
THAFPGANLSPRGREQKIGV*
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