prot_E-siliculosus-1a_M_contig9.16990.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig9.16990.1
Unique Name	prot_E-siliculosus-1a_M_contig9.16990.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	662

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig9.16990.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI)

HSP 1 Score: 671 bits (1730), Expect = 1.620e-233
Identity = 376/390 (96.41%), Postives = 378/390 (96.92%), Query Frame = 0

Query:   70 PGEPAAAAPGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXGS--DGGDVPRSLSINSDGGGFGAGTXXXXXXXXXXATARSTELGPAIKRRAPGKTSRGLGASGGRGSGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRELALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITACSLTGPIPSQVGDMTILQAVVLSGN 457
            PG P    PGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXX    DGGDVPRSLSINSDGGGFGAGTXXXXXXXX  ATARSTELGPAIKRRAPGKTSRGLGASGGRGSGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIR+LALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITA SLTGPIPSQVGDMTIL+AVVLSGN
Sbjct:   18 PGSPRPPPPGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXXXDGGDVPRSLSINSDGGGFGAGTXXXXXXXXAAATARSTELGPAIKRRAPGKTSRGLGASGGRGSGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILRAVVLSGN 407

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BLAST of mRNA_E-siliculosus-1a_M_contig9.16990.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE)

HSP 1 Score: 595 bits (1535), Expect = 6.450e-208
Identity = 347/379 (91.56%), Postives = 353/379 (93.14%), Query Frame = 0

Query:    1 MMYLVFLAFLYKLQGGRFRSFVRAVLGHDVEADKTPTSHSASDEKGVSKPLKPAVAGYVSDGAASDVSAPGEPAAAAPGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXGSDGGDVPRSLSINSDGGGFGAGTXXXXXXXXXXATARSTELGPAIKRRAPGKTSRGLGASGGRGSGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQG-----------FLIRELALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLR 368
            MMYLVFLAFLYKLQGGRFRSFVRAVLGHDVEAD TPTSH+ASDEKGVSKP+KPAVAGY+SDGAASDVSAPGEPAAAA GDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXX  DGGDVPRSLSINSDGGGF AGT XXXXXXXXXATARSTELGPAIKRRAPGKTSRGLGASG RGSGGHSW+LSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDW FLKYGLAGQG           FLIR+LALFFAIVGTVMWALSTTEFSLMSKLKNMWK      LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKI+HG SSQRAPSLSTQFKMIDQDPAVTRNLFKLR
Sbjct:    1 MMYLVFLAFLYKLQGGRFRSFVRAVLGHDVEADMTPTSHNASDEKGVSKPVKPAVAGYISDGAASDVSAPGEPAAAALGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXDGGDVPRSLSINSDGGGFEAGTRXXXXXXXXXATARSTELGPAIKRRAPGKTSRGLGASGARGSGGHSWYLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKV-----LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374

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BLAST of mRNA_E-siliculosus-1a_M_contig9.16990.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.290e-44
Identity = 106/258 (41.09%), Postives = 152/258 (58.91%), Query Frame = 0

Query:  201 RQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRELALFFAIVGTVMWALSTTEFSLMSKLKNMW--KGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCST----------GEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITACSLTGPIPSQVGDM 446
            R+ LKR  I  ++TP+ +L+S V DLDL  DW FL+ GL     L+ ++A    +VGTVM+ L T EF  +S+    W  +G  LS LQHV LGWQLL NV +ED+PQ +IT +T PTSV GVLN+  +G +L AK+  G++++    +S+Q +MID DP V ++L   R +A++ A  A  L  L   NR              ++  A  FQV+Q+DP F+ G+L Y+R  L   SRL +    L G +P  +GD+
Sbjct:  122 RRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLV--NRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKL-EVSRLNLGRFGLKGSLPPSLGDV 375

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BLAST of mRNA_E-siliculosus-1a_M_contig9.16990.1 vs. uniprot
Match: A0A6H5JP38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP38_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.940e-22
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0

Query:  389 RCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITACSLT 436
            RCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYIT+CSLT
Sbjct:    9 RCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITSCSLT 56

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig9.16990.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig9.16990.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7G1J8_ECTSI	1.620e-233	96.41	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
A0A6H5JNU7_9PHAE	6.450e-208	91.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FK13_ECTSI	1.290e-44	41.09	Hypothetical leucine rich repeat protein n=2 Tax=E...	[more]
A0A6H5JP38_9PHAE	9.940e-22	97.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 542..566 e-value: 7.4 score: 14.3 coord: 567..591 e-value: 210.0 score: 2.4 coord: 494..518 e-value: 42.0 score: 8.1 coord: 470..493 e-value: 300.0 score: 1.1
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 345..511 e-value: 3.8E-25 score: 90.3
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 512..619 e-value: 1.9E-26 score: 94.6
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 543..605 e-value: 4.4E-8 score: 32.8
None	No IPR available	GENE3D	3.30.1490.310		coord: 359..420 e-value: 3.8E-25 score: 90.3
None	No IPR available	PANTHER	PTHR27008:SF193		coord: 404..565 coord: 470..607
None	No IPR available	PANTHER	PTHR27008	FAMILY NOT NAMED	coord: 404..565 coord: 470..607
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 249..270
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..208
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 209..229
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 271..661
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 230..248
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 426..607

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig9	contig	E-siliculosus-1a_M_contig9:759507..774248 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig9.16990.1	mRNA_E-siliculosus-1a_M_contig9.16990.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig9 759507..776710 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig9.16990.1 ID=prot_E-siliculosus-1a_M_contig9.16990.1|Name=mRNA_E-siliculosus-1a_M_contig9.16990.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=662bp
MMYLVFLAFLYKLQGGRFRSFVRAVLGHDVEADKTPTSHSASDEKGVSKP
LKPAVAGYVSDGAASDVSAPGEPAAAAPGDKSRALAGLGLSASKGGGTFS
GSYQRLPSWGGDDEEAGGGGGGSGSDGGDVPRSLSINSDGGGFGAGTRSL
SVNSDAGATARSTELGPAIKRRAPGKTSRGLGASGGRGSGGHSWFLSAKD
RQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRELA
LFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVF
LEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQ
FKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAV
FQVLQMDPTFVGGDLEYMRADLFSGSRLYITACSLTGPIPSQVGDMTILQ
AVVLSGNQLSGCIPAELGKLVNLKELNLSENTLSGPIPVELTKLAALMVL
NLSTNALTGSIPAGLSDLKLLTTLMLAKNRLTGEIPPELGGLPTLQKLDL
SQNQLTGPIPEELGEGLSNLQSMSVGQNKLTEGSVPESLRGLSQLKSLVV
ASNMLTGAKEAEADLKPDLHPECVTDFLPQEEPEEGEEEEGEEEEEPPEE
VEGELETDLIV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf
IPR003591	Leu-rich_rpt_typical-subtyp