prot_E-siliculosus-1a_M_contig9.16972.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16972.1
Unique Nameprot_E-siliculosus-1a_M_contig9.16972.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length1164
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.16972.1 vs. uniprot
Match: A0A6H5JEX0_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX0_9PHAE)

HSP 1 Score: 1005 bits (2598), Expect = 0.000e+0
Identity = 915/1083 (84.49%), Postives = 933/1083 (86.15%), Query Frame = 0
Query:    1 MDVDSPSPSPSRLSPTRHGRATGFPAFVDDTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----GVKKTFSGVCPTCGTTFERLSAHLTRNKVCGSTPAGRAQLEAFASLRKRSAAAGRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGPPAGSERKGTRRTSESLWPCPVCTKSFRRISTHVQMSDCKSVLKSEAGPTMECRNCGEVVYVVPDVLQQHSKRCRPRNKSTNDEAAAEVAVTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------DANSGGGSFIAGRALGSDDSDSDPGGPDVGLGRAGSWSGAGGLPAAGXXXXIIGAMRRPLPPKKRWETAFETWAGGGEKNKGGGALPQATATAXXXXXXEAAEVGEVEDRYPCLASRAEESALVTVREVRRAESLPEGAAGTAAGEXXXXXXXXXXXXXVVCRLVAEGGIERKKGEAGIAASLGFRVTDDRTPGVANAWAGFPVAAAVVAGGVADSAGVGAGASILKVEDSSMRGRSAADVTKAMYAALLKRTGKHARSAATVRLVIVTPPWSASGPPPGGGVDNKAGASAPASPYDGVGGMACLGREGHEGREFVELCWSVLMAPGGGVLPPTDVDLPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPNGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSASQTRKGGRKAATTXXXXXXXXXXXXXXXQDAFERLSADHGDDSDWLRFLVFRKCATAAAAPPPSPP---------LASAGRAKRPVGTPKGSMESKMRALAGGAGRGATGQKEEANRELLPRQRSRELPGAAAAAADAEGXXXXXXXXXXXXDR-AKRGKLDDH 1050
            MDVDSPSPSPSRLSPTRH RATGFPAFVD TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GVKKTFSGVCPTCGT FERLSAHL RN VCGSTPAGRAQL+AFA+LRKRS AAGRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGP AGSE KG+RRTSESLWPCPVCTKSFRRISTHVQMSDCK VL+ EAG TMECRNCGEVV VVPDVLQQHSKRCRPR+KST+            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  DANSGGGSFIAGRALGSDDSDSDP GPD GLGRAGSW GAGGLPA G    IIGAMRRPLPPKKRWETAFE WAGGGEKNKG  ALPQ  A A      EAA+  EVEDRYPCLA RAEESALVTVREVRRAE+L EG AGTA   XXXXXXXXXXX   VCRLV EGGIE               VTDDR PGVANAWAGFPVAAAVVAGGVADSAGVGAGASILKVE+SSMRGRSAA+VTKAM+AALLKRTGKHA+SAATVRLVIVTPPW AS PPPGGGVDNKAGASAPAS YDGVGGMACLGREGHEGREFVELCWSV MA GGGVLPPTD D PASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSS+TP+GVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACD+A QT+KGG KA+TT XXXXXXXXXXXXX QDAFERLSA H DDSDWLRFLVFRKCA                    LA AGRAKRPVG P GSMESK   LAGGAGRG TGQKEE +R LLP Q SRELP AAA       XXXXXXXXXXXX   AKRGKLDDH
Sbjct:    1 MDVDSPSPSPSRLSPTRHSRATGFPAFVDHTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVKKTFSGVCPTCGTMFERLSAHLARNNVCGSTPAGRAQLDAFAALRKRSTAAGRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGP-AGSEGKGSRRTSESLWPCPVCTKSFRRISTHVQMSDCKIVLQWEAGATMECRNCGEVVDVVPDVLQQHSKRCRPRDKSTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNLLDHRRQPLPLVDANSGGGSFIAGRALGSDDSDSDPEGPDGGLGRAGSWCGAGGLPAGGGG--IIGAMRRPLPPKKRWETAFEAWAGGGEKNKGCVALPQPAAVAAA----EAAK--EVEDRYPCLAGRAEESALVTVREVRRAEALLEGGAGTAXXXXXXXXXXXXXX---VCRLVVEGGIE---------------VTDDRAPGVANAWAGFPVAAAVVAGGVADSAGVGAGASILKVEESSMRGRSAAEVTKAMFAALLKRTGKHAKSAATVRLVIVTPPWLASAPPPGGGVDNKAGASAPASSYDGVGGMACLGREGHEGREFVELCWSVFMASGGGVLPPTDRDSPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSITPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDTAFQTKKGGSKASTTAXXXXXXXXXXXXXGQDAFERLSAGHDDDSDWLRFLVFRKCAXXXXXXXXXXXXXXXXXXXXLAIAGRAKRPVGRPMGSMESKKGVLAGGAGRGVTGQKEEVSRGLLPWQLSRELPEAAAXXXXXXXXXXXXXXXXXXXXXSAKRGKLDDH 1056          
BLAST of mRNA_E-siliculosus-1a_M_contig9.16972.1 vs. uniprot
Match: D7G0M9_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M9_ECTSI)

HSP 1 Score: 975 bits (2521), Expect = 0.000e+0
Identity = 748/888 (84.23%), Postives = 761/888 (85.70%), Query Frame = 0
Query:  149 FERLSAHLTRNKVCGSTPAGRAQLEAFASLRKRSAAAGRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGPPAGSERKGTRRTSESLWPCPVCTKSFRRISTHVQMSDCKSVLKSEAGPTMECRNCGEVVYVVPDVLQQHSKRCRPRNKSTNDEAAAEVAVTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDANSGGG--SFIAGRALGSDDSDSDPGGPDVGLGRAGSWSGAGGLPAAGXXXXIIGAMRRPLPPKKRWETAFETWAGGGEKNKGGGALPQATATAXXXXXXEAAEVGEVEDRYPCLASRAEESALVTVREVRRAESLPEGAAGTAAGEXXXXXXXXXXXXXVVCRLVAEGGIERKKGEAGIAASLGFRVTDDRTPGVANAWAGFPVAAAVVAGGVADSAGVGAGASILKVEDSSMRGRSAADVTKAMYAALLKRTGKHARSAATVRLVIVTPPWSASGPPPGGG-VDNKAGASAPASPYDGVGGMACLGREGHEGREFVELCWSVLMAPGGGVLPPTDVDLPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPNGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSASQTRKGGRKAATTXXXXXXXXXXXXXXXQDAFERLSADHGDDSDWLRFLVFRKCATAAAAPPPSPP---LASAGRAKRPVGTPKGSMESKMRALAGGAGRGATGQKEEANRELLPRQRSRELPGAAAAA---ADAEG 1027
            FERLSAHLTRNKVCGSTPAGRAQLEAFA+LRKRS AAGRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGP AGSE KG+RR SESLWPCPVCTKSFRRISTHVQMSDCK VL+  AG TMECRNCGEVV VVPDVLQQHSKRCRPR+K TNDEA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         SFIAGRALGSDDSDSDPGG D GLGRAGSWSG        XXXX  G MRRPLPPKKRWETAFE WAG                  XXXXXXEAAEV EVEDRYPCLASRAEESALVTVREVRRAE+LPEGAAGTA GE             VVCRLVAEGGIERKKGEAG+AA+LGF+VTDDR PGV NAWAGFPVAAAVVA GVADSAGVG GASILKVEDSSMRGRSA+DVTKAMYAALLKRTGKH +SAATVRLVIVTPPWSAS P PGGG VDNKAGA APASPYDGVGGMACLGRE HEGREFVELCWSVLMAPGGGVLPPTDV LPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTP+GVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSASQT K G KAATT               +DAFERLSADHGDDSDWLRFLVFRKCA              LASAGRAKRPVG PKGSMESK  ALAGGAGRGATGQKEEA+R LLPRQRSRELPGAAA A   A AEG
Sbjct:    2 FERLSAHLTRNKVCGSTPAGRAQLEAFAALRKRSTAAGRPAVARGDFPPVGGIAAAVVGSRRPKAGGVRDSGAKEGP-AGSEGKGSRRRSESLWPCPVCTKSFRRISTHVQMSDCKIVLQWGAGATMECRNCGEVVDVVPDVLQQHSKRCRPRDKITNDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFIAGRALGSDDSDSDPGGTDGGLGRAGSWSGX--XXXXXXXXXXXGVMRRPLPPKKRWETAFEAWAGXXXXXX----XXXXXXXXXXXXXXEAAEVCEVEDRYPCLASRAEESALVTVREVRRAEALPEGAAGTAPGEQQQQHRRQAV---VVCRLVAEGGIERKKGEAGVAATLGFQVTDDRAPGVTNAWAGFPVAAAVVAEGVADSAGVGTGASILKVEDSSMRGRSASDVTKAMYAALLKRTGKHGKSAATVRLVIVTPPWSASAPTPGGGGVDNKAGAFAPASPYDGVGGMACLGRERHEGREFVELCWSVLMAPGGGVLPPTDVGLPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSASQTNKSGGKAATTNDSDN----------EDAFERLSADHGDDSDWLRFLVFRKCAXXXXXXXXXXXXXXLASAGRAKRPVGRPKGSMESKKGALAGGAGRGATGQKEEASRGLLPRQRSRELPGAAAPAPAPAGAEG 869          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16972.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEX0_9PHAE0.000e+084.49PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0M9_ECTSI0.000e+084.23PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 651..724
e-value: 1.8
score: 10.3
coord: 826..890
e-value: 0.17
score: 19.9
IPR001478PDZ domainPROSITEPS50106PDZcoord: 805..874
score: 9.752
NoneNo IPR availableGENE3D2.30.42.10coord: 639..745
e-value: 5.1E-5
score: 25.0
NoneNo IPR availableGENE3D2.30.42.10coord: 820..926
e-value: 1.5E-7
score: 33.3
IPR041489PDZ domain 6PFAMPF17820PDZ_6coord: 846..885
e-value: 2.2E-6
score: 27.4
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 652..718
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 827..879

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:520471..530206 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16972.1mRNA_E-siliculosus-1a_M_contig9.16972.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig9 518417..531865 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig9.16972.1 ID=prot_E-siliculosus-1a_M_contig9.16972.1|Name=mRNA_E-siliculosus-1a_M_contig9.16972.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1164bp
MDVDSPSPSPSRLSPTRHGRATGFPAFVDDTGGGGGGGTRTSSAASAPGN
GGNGSSSSSRRQQQQQPQQWPSSSSTSSPVSSSLSRRSPSPDASSTASSY
FSVNGGGGGSTISSNNEGGGLAVAAAQQQQQQGVKKTFSGVCPTCGTTFE
RLSAHLTRNKVCGSTPAGRAQLEAFASLRKRSAAAGRPAVARGDFPPVGG
IAAAVVGSRRPKAGGVRDSGAKEGPPAGSERKGTRRTSESLWPCPVCTKS
FRRISTHVQMSDCKSVLKSEAGPTMECRNCGEVVYVVPDVLQQHSKRCRP
RNKSTNDEAAAEVAVTPSESSSTSPPPLLPAQAPTLGGAAPSSSQQLTRS
ASLTSSTASGPAAAAAAPPKGGAGGGATARSRVGGGSNNGTGKRRGFPQN
GGGGGRASPSTSEGGGGLGGESAPPRLKRRVSTASAASSGSGQSGVMRRG
STTSSTSNLLDHRRQPPPLLDANSGGGSFIAGRALGSDDSDSDPGGPDVG
LGRAGSWSGAGGLPAAGGGGGIIGAMRRPLPPKKRWETAFETWAGGGEKN
KGGGALPQATATAAAAAAAEAAEVGEVEDRYPCLASRAEESALVTVREVR
RAESLPEGAAGTAAGEQQQQQQQHRRQAVVVCRLVAEGGIERKKGEAGIA
ASLGFRVTDDRTPGVANAWAGFPVAAAVVAGGVADSAGVGAGASILKVED
SSMRGRSAADVTKAMYAALLKRTGKHARSAATVRLVIVTPPWSASGPPPG
GGVDNKAGASAPASPYDGVGGMACLGREGHEGREFVELCWSVLMAPGGGV
LPPTDVDLPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVT
PNGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSASQTR
KGGRKAATTTTTTTTTDNDNDNDDQDAFERLSADHGDDSDWLRFLVFRKC
ATAAAAPPPSPPLASAGRAKRPVGTPKGSMESKMRALAGGAGRGATGQKE
EANRELLPRQRSRELPGAAAAAADAEGAAAGTAAGASAGDRAKRGKLDDH
SLNSSSSSTRKCGWSGTRSGRGWRYDGGRRGGSRNKGAPTGRCSPYGPRT
HCLEPRQERPFQPALSSWRIPSSGTSSSSPRGRSCCRWMGFLRGTWTSTP
RETWRSLQGLSPC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR041489PDZ_6
IPR001478PDZ