prot_E-siliculosus-1a_M_contig9.16968.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16968.1
Unique Nameprot_E-siliculosus-1a_M_contig9.16968.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length832
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16968.1 vs. uniprot
Match: D7FZB2_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB2_ECTSI)

HSP 1 Score: 1077 bits (2784), Expect = 0.000e+0
Identity = 786/834 (94.24%), Postives = 793/834 (95.08%), Query Frame = 0 
Query:    1 MAFVTPSAWFETAAPYRGVLQQPLSPETSTATATSRRSRRPS-IIASASASGTCPAAPAELRKERPSGTRRVAGARAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PPTAGTGQQAHPTPXXXXXARRAAKIRKASVTNGPKLGGWRCPACGAQLYRQQEECSLCQTPRPVAGAAGEDGGYVKRPGGKRHARADVRSREFTNKIRGMPAGDWRGVVRELEEEERLEEADSQLXXXXXXXXXXXXDE-AAKSLGAPSVHGYHAVMQRLEECGRWREAAAVLRRMHRKLGPRAGDVPTLSAACLHKAMSACFAAEQWGACSDLLEETRGWATEASYRSFKLAIEACVRGGRWERGLSVLMERTSQKTDRKWEALPFNRVMXXXXXXXXXXXAVALLDHMKDEVGAEPDLVTYGIAINAYGNVGEWRRALGVLKESLPEMRTGGGASRENACLCFAYXXXXXXXXXXXXXXXXXXXXDVPATGVAPNALVLHEALTTCGVGGRWQQALELLPRALAVADGKPSSCLRSYTAAIKXXXXXXXXXXXXXXFRRGQRDGLQPDEVCYAEVMSACAGGGRADETLGLLREMPAAAGQLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGLAPGVSTCXXXXXXXXXXXXXXXXXXXXXXXSTAPGLPAPDATSYNTAITACESAGRFEEAVGLFRTMERIGVAXXXXXXXXXXXXXXXXXXXXXXXALLGKVRSRATAAEPXXXXXXXXXXXXXXXXXXXXXVSVFRLMLADGLVPTDRAWSAVISACEAATGVPGGGDEERVRAVMALLVRAREEAGVDRPDDGGGHAPDSDQKE 831
            MAFVTPSAWFETA PYRGVLQQPLSP TSTAT TSRRSRRPS +IASASAS TCPAAPAELRKER SG RRVAGARA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX PPTAGTGQQAHPTPXXXXXARRAA IRKASVTNGPKLGGWRCPACGAQLYRQQEECSLCQTPRPVAGAAG+DGGYVKRPGGKRH RADVRSREFTNKIRGMPAGDWRGVVRELEEEERLEEADSQLXXXXXXXXXXXX   AAKSLGAPSVHGYHAVMQRLEECGRWREAAAVLRRMHRKLGPRAGDVPTLSAACLHKAMSACFAAEQWG CSDLLEE RGWATEASYRSFKLAIEACVRGGRWERGLSVLMERTS+KTDRKWE LPFNRVMXXXXXXXXXXXAVALLDHMKDEVGAEPDLVTYGIAINAYGN GEWRRALGVLKESLPEMRTGGGAS ENACLCFAYXXXXXXXXXXXXXXXXXXXXDVPATGV PNALVLHEALT CGVGGRWQQALELLPRALAVADGKPSSCLRSYTAAI XXXXXXXXXXXXXXFRRGQRDGLQPDEVCYAEVMSACAGGG ADETLGLLREMPAAA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX TVGLA      XXXXXXXXXXXXXXXXXXXXXXX TAPGLPAPDATSYNTAITACESAGRFEEAVGLFR MERIGVAXXXXXXXXXXXXXXXXXXXXXXXALLG+VRSRATAAEPXXXXXXXXXXXXXXXXXXXXXVSVFRLMLAD LVPTDRAWSAVISACEAA GVPG GD+ERVRAVMALLVRAREE GVDRPDDGGGH PDS++KE
Sbjct:    1 MAFVTPSAWFETAVPYRGVLQQPLSPATSTAT-TSRRSRRPSSLIASASASATCPAAPAELRKERTSGARRVAGARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTAGTGQQAHPTPXXXXXARRAAGIRKASVTNGPKLGGWRCPACGAQLYRQQEECSLCQTPRPVAGAAGDDGGYVKRPGGKRHTRADVRSREFTNKIRGMPAGDWRGVVRELEEEERLEEADSQLXXXXXXXXXXXXXXXAAKSLGAPSVHGYHAVMQRLEECGRWREAAAVLRRMHRKLGPRAGDVPTLSAACLHKAMSACFAAEQWGTCSDLLEEARGWATEASYRSFKLAIEACVRGGRWERGLSVLMERTSEKTDRKWEVLPFNRVMXXXXXXXXXXXAVALLDHMKDEVGAEPDLVTYGIAINAYGNAGEWRRALGVLKESLPEMRTGGGASCENACLCFAYXXXXXXXXXXXXXXXXXXXXDVPATGVVPNALVLHEALTACGVGGRWQQALELLPRALAVADGKPSSCLRSYTAAIXXXXXXXXXXXXXXXFRRGQRDGLQPDEVCYAEVMSACAGGGCADETLGLLREMPAAA-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTVGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPGLPAPDATSYNTAITACESAGRFEEAVGLFRAMERIGVAXXXXXXXXXXXXXXXXXXXXXXXALLGEVRSRATAAEPXXXXXXXXXXXXXXXXXXXXXVSVFRLMLADSLVPTDRAWSAVISACEAAAGVPGRGDDERVRAVMALLVRAREETGVDRPDDGGGHTPDSERKE 832
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16968.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZB2_ECTSI0.000e+094.24RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 215..235
NoneNo IPR availableGENE3D4.10.1060.10coord: 137..178
e-value: 2.3E-5
score: 25.5
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 370..562
coord: 454..656
coord: 526..780
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 373..405
e-value: 3.7E-4
score: 18.5
coord: 668..701
e-value: 8.9E-5
score: 20.4
coord: 524..557
e-value: 1.9E-6
score: 25.7
coord: 740..772
e-value: 1.6E-5
score: 22.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 735..783
e-value: 0.0069
score: 16.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 524..552
e-value: 4.3E-5
score: 23.5
coord: 596..624
e-value: 0.068
score: 13.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 373..416
e-value: 2.1E-7
score: 31.0
coord: 664..712
e-value: 1.5E-8
score: 34.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 737..771
score: 10.567
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 447..482
score: 7.004
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 556..590
score: 7.859
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 332..366
score: 5.831
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 700..734
score: 9.24
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 665..699
score: 12.057
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 255..285
score: 7.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 369..399
score: 8.44
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 628..662
score: 6.785
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 405..435
score: 7.476
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 521..555
score: 10.885
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 593..627
score: 9.602
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 483..518
score: 5.218
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 661..820
e-value: 3.6E-33
score: 117.2
coord: 299..484
e-value: 3.1E-22
score: 81.3
coord: 486..660
e-value: 4.4E-34
score: 120.2
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 142..171
score: 8.931

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:488534..491714 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16968.1mRNA_E-siliculosus-1a_M_contig9.16968.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig9 488444..491779 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig9.16968.1 ID=prot_E-siliculosus-1a_M_contig9.16968.1|Name=mRNA_E-siliculosus-1a_M_contig9.16968.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=832bp
MAFVTPSAWFETAAPYRGVLQQPLSPETSTATATSRRSRRPSIIASASAS
GTCPAAPAELRKERPSGTRRVAGARAPPPPPVAAGDLAKKQQPPPARPPP
RTNQRRPPTAGTGQQAHPTPTPRPRARRAAKIRKASVTNGPKLGGWRCPA
CGAQLYRQQEECSLCQTPRPVAGAAGEDGGYVKRPGGKRHARADVRSREF
TNKIRGMPAGDWRGVVRELEEEERLEEADSQLQQQGGGRGGGGEDEAAKS
LGAPSVHGYHAVMQRLEECGRWREAAAVLRRMHRKLGPRAGDVPTLSAAC
LHKAMSACFAAEQWGACSDLLEETRGWATEASYRSFKLAIEACVRGGRWE
RGLSVLMERTSQKTDRKWEALPFNRVMQACVDAGRWQEAVALLDHMKDEV
GAEPDLVTYGIAINAYGNVGEWRRALGVLKESLPEMRTGGGASRENACLC
FAYAIRACKHAGEFDEALGVLDRDVPATGVAPNALVLHEALTTCGVGGRW
QQALELLPRALAVADGKPSSCLRSYTAAIKACGRAGQWEDALSLFRRGQR
DGLQPDEVCYAEVMSACAGGGRADETLGLLREMPAAAGQLRPTVPCYNAA
IVACGAGGDWRRSVELLEEMPTVGLAPGVSTCNMAINALRRGRQCQRVLD
LLERMSTAPGLPAPDATSYNTAITACESAGRFEEAVGLFRTMERIGVAPD
VVGYTATIQALGRCGRWEEALALLGKVRSRATAAEPNVRTYVAAVHAAGH
AGQWERAVSVFRLMLADGLVPTDRAWSAVISACEAATGVPGGGDEERVRA
VMALLVRAREEAGVDRPDDGGGHAPDSDQKE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat