prot_E-siliculosus-1a_M_contig89.16874.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig89.16874.1
Unique Name	prot_E-siliculosus-1a_M_contig89.16874.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	192

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig89.16874.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 1.230e-129
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0

Query:    1 MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191
            MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH
Sbjct:    1 MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191

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BLAST of mRNA_E-siliculosus-1a_M_contig89.16874.1 vs. uniprot
Match: A0A7S2VZL5_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZL5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.790e-13
Identity = 57/191 (29.84%), Postives = 98/191 (51.31%), Query Frame = 0

Query:    9 QAFAQILMARKVMSQDEAQKALDVSYQRF--GELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAK--SEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLT----RPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191
            QAF Q+L+A +V+S+++AQ  L+    R   G L   L+  + +V++ L  MD+ VR+M    P     H  +N  AD+IA+ HGSK++  +++AFR  I    +   E++   L DL                 +  ++  + +V   WL     R G     R+  R+++E+P+LL++  +E PQ I+H
Sbjct:   24 QAFLQMLLAARVVSENKAQSMLEAVRDRMEAGSLPGDLETTLKRVNRALKLMDLEVRTMAL--PQQERVHAVVNLAADDIAEKHGSKMQHNEIRAFRNAISIIGECDGEDKWAALGDL----------------NKADQAVVEDMVQRGWLAVDSQRRG-----RIAARSFLEIPDLLESHGIERPQFIYH 191

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig89.16874.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig89.16874.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LSK7_ECTSI	1.230e-129	100.00	Non-structural maintenance of chromosomes element ...	[more]
A0A7S2VZL5_9STRA	3.790e-13	29.84	Non-structural maintenance of chromosomes element ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011513	Non-structural maintenance of chromosomes element 1	PFAM	PF07574	SMC_Nse1	coord: 9..174 e-value: 1.2E-10 score: 41.7
IPR011513	Non-structural maintenance of chromosomes element 1	PANTHER	PTHR20973	NON-SMC ELEMENT 1-RELATED	coord: 8..186
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 84..182 e-value: 7.5E-6 score: 27.8

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig89	contig	E-siliculosus-1a_M_contig89:194873..201284 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig89.16874.1	mRNA_E-siliculosus-1a_M_contig89.16874.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig89 193667..201469 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig89.16874.1 ID=prot_E-siliculosus-1a_M_contig89.16874.1|Name=mRNA_E-siliculosus-1a_M_contig89.16874.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=192bp
MASLREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISK
VDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVK
AFRGMIEKFAKSEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLV
DDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036388	WH-like_DNA-bd_sf
IPR011513	Nse1