prot_E-siliculosus-1a_M_contig87.16722.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16722.1
Unique Nameprot_E-siliculosus-1a_M_contig87.16722.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length209
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: D7FW65_ECTSI (SNRNP27 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW65_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 2.020e-81
Identity = 167/179 (93.30%), Postives = 169/179 (94.41%), Query Frame = 0
Query:   30 GRXXXXXXXRSSRKRSPPRRHFREDGGKDAAXXXXXXXXXXXXXXXXXXXXXXXXKPSKQEARRAEAAIKRQKMLEEQQREKDKVKDRLHLIRQMKGDASGEEDAPGSGSDXXXXXXDLTEEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 208
            GRXXXXXXXRSSRKRSPPRRHFREDGGKDAAXXXXXXXXXXXXXXXXXX      KPSKQEARRAEAAIKRQKMLEEQQREKDKVKDRLHLIRQMKGDASGEEDA GSGSD  XXXX LTEEQ+M+KLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM
Sbjct:   30 GRXXXXXXXRSSRKRSPPRRHFREDGGKDAAXXXXXXXXXXXXXXXXXXTTSETSKPSKQEARRAEAAIKRQKMLEEQQREKDKVKDRLHLIRQMKGDASGEEDALGSGSDGDXXXXXLTEEQQMMKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 208          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: A0A835ZFB0_9STRA (SNRNP27 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.330e-23
Identity = 45/61 (73.77%), Postives = 57/61 (93.44%), Query Frame = 0
Query:  148 LTEEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 208
            ++EEQ+M++++GF GFD+TKGK VEDN++G AKGA+SKHKER+YRQYMNRRGGFNRPL KM
Sbjct:  162 MSEEQQMMRMLGFGGFDSTKGKAVEDNKKGAAKGAVSKHKERKYRQYMNRRGGFNRPLAKM 222          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: A0A5D6YFD5_9STRA (SNRNP27 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFD5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.240e-18
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0
Query:  148 LTEEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLD 206
            LTEE++M  LMGF GFD+TKGK VEDN +G A GA+ K K+R+YRQYMNRRGGFNRPL+
Sbjct:  196 LTEEEQMQALMGFGGFDSTKGKPVEDNAKGVAAGAVGKEKKRQYRQYMNRRGGFNRPLE 254          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: A0A2D4C0V1_PYTIN (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0V1_PYTIN)

HSP 1 Score: 88.2 bits (217), Expect = 3.280e-18
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0
Query:  148 LTEEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLD 206
            L+EE++M  L+GF GFD+TKGK VEDN  GPA GA  K  +REYRQYMNRRGGFNRPLD
Sbjct:  133 LSEEEQMQMLLGFGGFDSTKGKSVEDNAVGPAAGAARKETKREYRQYMNRRGGFNRPLD 191          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: A0A482S2G0_9ARCH (DUF1777 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2G0_9ARCH)

HSP 1 Score: 87.0 bits (214), Expect = 9.870e-18
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0
Query:  150 EEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 208
            EE+ +  LMGFAGF +TKGK VEDN  G A G +SKHK R+YRQYMNR+GGFNRPL KM
Sbjct:  137 EEEDVAMLMGFAGFGSTKGKQVEDNAHGAAAGGVSKHKARKYRQYMNRKGGFNRPLQKM 195          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: A0A7S2BZL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZL9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.510e-17
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 0
Query:  115 KDRLHLIRQMKGDASGEEDAPGSGSDXXXXXXDLTEEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRG 199
            K R+ ++++M+G  S EED              +TEE++M  LMGF GFDTTKGK VEDN+   AKG ++KHK REY+QYMN++G
Sbjct:   74 KSRMEMLKRMQGVESDEEDGXXXXXGGKKSLEGMTEEEQMASLMGFGGFDTTKGKAVEDNKSTAAKGHVAKHKRREYKQYMNKKG 158          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: A0A7S3PY04_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PY04_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.620e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 0
Query:  148 LTEEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 208
            + EE +M+KL+GF GFD+TK K VEDN+   A+G+ +K+K R+YRQYMNR+GGFNRPLDKM
Sbjct:  112 MDEEDQMMKLLGFGGFDSTKDKEVEDNKNSLARGSAAKNKARKYRQYMNRKGGFNRPLDKM 172          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: A0A7S2K6S7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6S7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.750e-17
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0
Query:  148 LTEEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 208
            LTEE+KM+K+MG   F +TKGK V+DNQ   +KGA +K K R+YRQYMNR+GGFNRPLDKM
Sbjct:  146 LTEEEKMMKMMGIGVFGSTKGKAVKDNQVSASKGACAKSKARKYRQYMNRKGGFNRPLDKM 206          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: B8CB98_THAPS (SNRNP27 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB98_THAPS)

HSP 1 Score: 84.7 bits (208), Expect = 3.980e-17
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 0
Query:  147 DLTEEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 208
            D  E+  M++++GF GF +TKGK V+DNQ   A+GA SK+K R+YRQYMNR+GGFNRPLDKM
Sbjct:  106 DGDEQDDMMQMLGFGGFGSTKGKAVQDNQSSAARGAASKNKGRKYRQYMNRKGGFNRPLDKM 167          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Match: K3WFH3_GLOUD (SNRNP27 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFH3_GLOUD)

HSP 1 Score: 86.3 bits (212), Expect = 4.470e-17
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0
Query:  148 LTEEQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLD 206
            LTEE++M  LMGF GFD+TKGK VEDN +G A G + K  +R YRQYMNRRGGFNRPLD
Sbjct:  178 LTEEEQMQALMGFGGFDSTKGKVVEDNAKGVATGGVRKESKRAYRQYMNRRGGFNRPLD 236          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16722.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW65_ECTSI2.020e-8193.30SNRNP27 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZFB0_9STRA3.330e-2373.77SNRNP27 domain-containing protein n=1 Tax=Tribonem... [more]
A0A5D6YFD5_9STRA2.240e-1871.19SNRNP27 domain-containing protein n=1 Tax=Pythium ... [more]
A0A2D4C0V1_PYTIN3.280e-1871.19U4/U6.U5 small nuclear ribonucleoprotein 27 kDa pr... [more]
A0A482S2G0_9ARCH9.870e-1869.49DUF1777 domain-containing protein n=1 Tax=archaeon... [more]
A0A7S2BZL9_9STRA1.510e-1749.41Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3PY04_9STRA1.620e-1763.93Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2K6S7_9STRA1.750e-1767.21Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8CB98_THAPS3.980e-1762.90SNRNP27 domain-containing protein n=1 Tax=Thalassi... [more]
K3WFH3_GLOUD4.470e-1769.49SNRNP27 domain-containing protein n=1 Tax=Globispo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..124
NoneNo IPR availablePANTHERPTHR31077FAMILY NOT NAMEDcoord: 1..208
NoneNo IPR availablePANTHERPTHR31077:SF1SMALL NUCLEAR RIBONUCLEOPROTEIN U4/U6.U5 SUBUNIT 27coord: 1..208
IPR013957U4/U6.U5 small nuclear ribonucleoprotein 27kDa proteinPFAMPF08648SNRNP27coord: 150..208
e-value: 1.6E-27
score: 95.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:150521..152549 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16722.1mRNA_E-siliculosus-1a_M_contig87.16722.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig87 150281..153219 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig87.16722.1 ID=prot_E-siliculosus-1a_M_contig87.16722.1|Name=mRNA_E-siliculosus-1a_M_contig87.16722.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=209bp
MGRSRSRSRSRERGGREERGRGDRDRDRGGRRRDRDQDRSSRKRSPPRRH
FREDGGKDAAGKDATGRDKSGKVDKSKATTSEASKPSKQEARRAEAAIKR
QKMLEEQQREKDKVKDRLHLIRQMKGDASGEEDAPGSGSDGDDDDEDLTE
EQKMIKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGG
FNRPLDKM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013957SNRNP27