prot_E-siliculosus-1a_M_contig85.16596.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig85.16596.1
Unique Nameprot_E-siliculosus-1a_M_contig85.16596.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length87
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig85.16596.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.360e-35
Identity = 73/83 (87.95%), Postives = 73/83 (87.95%), Query Frame = 0 
Query:    1 MPQRPNMPECHAFVKNGCCRFLHNCRYHHPYDRLGMPTQDSAGXXXXXXXXXXXXXXXXXXXXSGVDAIIGVQDRAPCDMFLN 83
            MPQRPNMPECH FVKNGCCRFLHNCRYHHPYDRLGM TQDSAGXXXXXXXXXXXX        SGVDAIIGVQDRAPCDMFLN
Sbjct:  181 MPQRPNMPECHGFVKNGCCRFLHNCRYHHPYDRLGMATQDSAGXXXXXXXXXXXXSHENVGGGSGVDAIIGVQDRAPCDMFLN 263
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BLAST of mRNA_E-siliculosus-1a_M_contig85.16596.1 vs. uniprot
Match: A0A1S2YQD3_CICAR (zinc finger CCCH domain-containing protein 34 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YQD3_CICAR)

HSP 1 Score: 51.6 bits (122), Expect = 1.290e-5
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 0 
Query:    1 MPQRPNMPECHAFVKNGCCRFLHNCRYHHPYDRLGMP 37
            +P+RP+ PECH ++K G C+F  +CRYHHP D  G P
Sbjct:  296 LPERPDQPECHHYMKTGECKFGSSCRYHHPPD-TGAP 331
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BLAST of mRNA_E-siliculosus-1a_M_contig85.16596.1 vs. uniprot
Match: UPI00092F3253 (zinc finger CCCH domain-containing protein 37-like isoform X1 n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F3253)

HSP 1 Score: 51.2 bits (121), Expect = 1.760e-5
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 0 
Query:    2 PQRPNMPECHAFVKNGCCRFLHNCRYHHPYDRLGMPTQDSA 42
            PQRP   EC  ++KNG C+FL  C++HHP DR   P Q + 
Sbjct:  375 PQRPGQIECDYYMKNGVCKFLERCKFHHPIDR-SAPLQQTV 414
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BLAST of mRNA_E-siliculosus-1a_M_contig85.16596.1 vs. uniprot
Match: A0A251PCN7_PRUPE (C3H1-type domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=A0A251PCN7_PRUPE)

HSP 1 Score: 46.6 bits (109), Expect = 9.010e-5
Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 0 
Query:    1 MPQRPNMPECHAFVKNGCCRFLHNCRYHHPYDRLGM 36
            +P+RP  P C  F + G C+F+ NC+YHHP ++  +
Sbjct:   31 LPERPGQPACIYFSRTGDCKFISNCKYHHPKNQTAL 66
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig85.16596.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K9M4_9PHAE1.360e-3587.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1S2YQD3_CICAR1.290e-554.05zinc finger CCCH domain-containing protein 34 n=1 ... [more]
UPI00092F32531.760e-548.78zinc finger CCCH domain-containing protein 37-like... [more]
A0A251PCN7_PRUPE9.010e-541.67C3H1-type domain-containing protein n=1 Tax=Prunus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 4..32
score: 11.864
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 6..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig85contigE-siliculosus-1a_M_contig85:275982..277343 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig85.16596.1mRNA_E-siliculosus-1a_M_contig85.16596.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig85 275982..277343 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig85.16596.1 ID=prot_E-siliculosus-1a_M_contig85.16596.1|Name=mRNA_E-siliculosus-1a_M_contig85.16596.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=87bp
MPQRPNMPECHAFVKNGCCRFLHNCRYHHPYDRLGMPTQDSAGGGGGGGT
QRGPSSHENGGGGSGVDAIIGVQDRAPCDMFLNVSFF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036855Znf_CCCH_sf
IPR000571Znf_CCCH