prot_E-siliculosus-1a_M_contig84.16529.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16529.1
Unique Nameprot_E-siliculosus-1a_M_contig84.16529.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length975
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: A0A6H5JRB6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB6_9PHAE)

HSP 1 Score: 662 bits (1708), Expect = 1.400e-222
Identity = 509/612 (83.17%), Postives = 525/612 (85.78%), Query Frame = 0
Query:  346 VDSADSVGDGGNVVRKDAGSCSNLNGRSAAVSGGASRNDAPGDAAEILGVAGRLVRTRGPWRCIFSQGRQPSASVGEVRNNGTAEAAAAAAAGVMQXXXXXXXXXXXXXXXXXXXXXGVMRRTEGCKSAGERALSSAGGDGVERNGGCACNGVGESNGGGVDAAGTVGGDGRSGSEATEQLSVVAAAAADGRAGFGGDGEGRNRGGGLEEGARPVREPRAEQGPVYLNTATMETAREPPPELVALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSHNSNVAAAPAFSHSNSNMDVDSSGSXXXXXXXXXXXXXXXXXXXNAAVTVARMSEAASAVGAAAERVLQDVTAAGESFSPPCSTTAVNAGTGSGXXXXXXXXXGSNTRRNSRGEQAQDTRQGSPLEASTTPSTVAKAVLGXXXXXXXXXXXXXXXXXX-TWDRLSSLPTIDLSQGVASAPADVEDAGGAGGNAALTVAATWTCVACTLTNKARRTTCEVCGTSRPKASQQRXXXXXXXXXXXXXXXXXXXXHRRVGSVSKLRLRHPARSTSITPFTSRPGGXXXXXXXXXXXXXXXXXXXXXXXXXPQPPLSQSAGTTPINGFPSVRSQERSSP 956
            V+SA  VG GGNV+R DAG C +L GRS+ V G ASRNDA GDAAEILGVAGRLVRTRGPWRCIFSQGRQPSASVGEVRNNGTAEAAAAA  GVM XXXXXXXXXXXXX        GVMRRTEGCKSAGERAL SAGG GVERNGGCA NGVGESNG GV AA TVGGDGRSGS+ T++LSVVAAAA DGRAGFGG GEGR+RGGG EE ARPVREP A+QGPVYLNTATMET REPP ELVALADQAESAGDYLVFVPSHRFVAAAAGAVPA ASSHNSNVAAAPAFSH +SNMDV+S+  XXXXXXXXXXXXXXXXXXX AAVTVARMSEA SAVGAA ER    VTAA ES SP              XXXXXXXX G N RRN RGEQAQDT+QGSPLEASTT STVAKAVLGXXXXXXXXXXXXXXXXXX TWDRLSSLPTIDLSQGVASAP DVE+AGG GGN A+TVA TWTCVACTLTNKARRTTCE+CGTSRPKASQQRXXXXXXXXXXXXXXXXXX  HRRVGSVSKLRLR PARS SITPFTSRP G XXXXXXXXXXXXXXXXX       PQPPLSQ AGTTPINGFPSVRSQERSSP
Sbjct:  225 VNSAGIVGGGGNVMRNDAGGCRSLVGRSSVVGGVASRNDAAGDAAEILGVAGRLVRTRGPWRCIFSQGRQPSASVGEVRNNGTAEAAAAA--GVMXXXXXXXXXXXXXXAA------GVMRRTEGCKSAGERALRSAGGYGVERNGGCASNGVGESNGSGVGAAATVGGDGRSGSKTTQELSVVAAAAEDGRAGFGGSGEGRDRGGGQEEAARPVREPGADQGPVYLNTATMETVREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGAVPAPASSHNSNVAAAPAFSHCSSNMDVESNXXXXXXXXXXXXXXXXXXXXXXAAVTVARMSEATSAVGAAGEREQPAVTAASESCSPXXXXXXXXXXXXXXXXXXXXXXVGPNPRRNGRGEQAQDTQQGSPLEASTTLSTVAKAVLGXXXXXXXXXXXXXXXXXXXTWDRLSSLPTIDLSQGVASAPLDVENAGGTGGNKAVTVATTWTCVACTLTNKARRTTCELCGTSRPKASQQRXXXXXXXXXXXXXXXXXX--HRRVGSVSKLRLRQPARSPSITPFTSRPAGGXXXXXXXXXXXXXXXXXS------PQPPLSQPAGTTPINGFPSVRSQERSSP 820          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: D8LPZ5_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ5_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 2.280e-94
Identity = 222/278 (79.86%), Postives = 228/278 (82.01%), Query Frame = 0
Query:  577 METAREPPPELVALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSHNSNVAAAPAFSHSNSNMDVDSSGSXXXXXXXXXXXXXXXXXXXNAAVTVARMSEAASAVGAAAERVLQDVTAAGESFSPPCSTTAVNAGTGSGXXXXXXXXX--GSNTRRNSRGEQAQDTRQGSPLEASTTPSTVAKAVLGXXXXXXXXXXXXXXXXXXTWDRLSSLPTIDLSQGVASAPADVEDAGGAGGNAALTVAATWTCVACTLTNKARRTTCEVCGTSRPKASQQ 852
            METAREPP ELVALADQAESAGDYLVFVPSHRFVAAAAGAVPASASS NSNVAAAP FSH +SNMDVD +GS                   NAAVTVARMSEAASAV AAAERVLQ VTAAGES SP              XXXXXXXXX  GSNTRRNSRGEQAQDT+QG PLEASTTPSTVAKAVLGXXXXXXXXXXXXXXXX  TWDRLSSLPTIDLSQGVASAP DVE+ GGAGGN A+TVA TWTCVACTLTNK+RRTTCEVCGTSRPKASQQ
Sbjct:    1 METAREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSRNSNVAAAPVFSHRSSNMDVDGNGSNPAAASALSHNSNMDTDS-NAAVTVARMSEAASAVVAAAERVLQAVTAAGESCSPXXXXXXXXXXXXXXXXXXXXXXXXXGSNTRRNSRGEQAQDTQQGLPLEASTTPSTVAKAVLGXXXXXXXXXXXXXXXXG-TWDRLSSLPTIDLSQGVASAPVDVENGGGAGGNKAVTVATTWTCVACTLTNKSRRTTCEVCGTSRPKASQQ 276          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: D8LPZ3_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ3_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 4.800e-86
Identity = 185/214 (86.45%), Postives = 190/214 (88.79%), Query Frame = 0
Query:   94 MLQMSKELRSICTTWKHNRRAILAAANAXXXXXXXXXXXXXXXXXXXXXGRRKVCAVGAGQGRDGDGGVVKAVHYHSLNDSKMKALLIRVGLPVGGGKAAMVARHKRLVLLSAASNDREVPLPKAKLLRQVAAWEREKDKERLANAKTARAGLVSGSTGSGGGSAQALRTAGIARAXXXXXXXXXXXXXXXXXQIVISKEMKDGFSALIASARS 307
            MLQ+SKELRSICTTWKHNRRAILAAANA  XXXXXXXXXXXX       GRRKVCA+GAGQGR GDGGVVKAVHYHSLNDSKMKALLIRVGLPVGGGKAAMVARHKRLVLLSAASNDREVPLPKA+LLRQVAAWEREKDKER+ANAKTARAGLVSGS GSGGGS QALR AG       XXXXXXXXXX    +IVISKEMKDGFSALIASARS
Sbjct:    1 MLQLSKELRSICTTWKHNRRAILAAANASAXXXXXXXXXXXXREQPAPSGRRKVCAIGAGQGRVGDGGVVKAVHYHSLNDSKMKALLIRVGLPVGGGKAAMVARHKRLVLLSAASNDREVPLPKAQLLRQVAAWEREKDKERMANAKTARAGLVSGSAGSGGGSRQALRPAGTG----GXXXXXXXXXXPESEKIVISKEMKDGFSALIASARS 210          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: RAD18_ASHGO (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) TaxID=284811 RepID=RAD18_ASHGO)

HSP 1 Score: 60.1 bits (144), Expect = 1.410e-5
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0
Query:   36 PAFGSIESILRCAICRGLSDPPVSLPCCQQTFCSLCIRQYLNSTTPRCPCCRKQSASNMLQ 96
            P    ++S+LRC IC+ +   PV L  C  TFCSLCIR+YLN  + RCP C  +   NMLQ
Sbjct:   21 PELADLDSLLRCHICKDMLQTPV-LTQCGHTFCSLCIREYLNKES-RCPLCLAELRQNMLQ 79          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: R9X7K0_ASHAC (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Ashbya aceri TaxID=566037 RepID=R9X7K0_ASHAC)

HSP 1 Score: 59.7 bits (143), Expect = 1.940e-5
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0
Query:   36 PAFGSIESILRCAICRGLSDPPVSLPCCQQTFCSLCIRQYLNSTTPRCPCCRKQSASNMLQ 96
            P    ++S+LRC IC+ +   PV L  C  TFCSLCIR+YLN  + RCP C  +   NMLQ
Sbjct:   21 PELADLDSLLRCHICKDMLQTPV-LTQCGHTFCSLCIREYLNRES-RCPLCLAELRQNMLQ 79          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: W2S882_9EURO (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2S882_9EURO)

HSP 1 Score: 59.3 bits (142), Expect = 2.800e-5
Identity = 33/86 (38.37%), Postives = 45/86 (52.33%), Query Frame = 0
Query:   30 PKAGLGPAFGSIESILRCAICRGLSDPPVSLPCCQQTFCSLCIRQYLNSTTPRCPCCRKQSASNMLQMSKELRSICTTWKHNRRAI 115
            P AGL P    +ES LRC +C+ +   P+ +  C  TFCSLCIR+YLN    +CP C K      L+ +  ++     W  NR  I
Sbjct:   16 PLAGLAP----LESSLRCQVCKEILSTPM-ITSCSHTFCSLCIRRYLNQEG-KCPSCTKPDQEMKLRNNWAVQEFVEIWSKNRTEI 95          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: A0A109V0B9_9SACH (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A109V0B9_9SACH)

HSP 1 Score: 58.9 bits (141), Expect = 3.370e-5
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 0
Query:   36 PAFGSIESILRCAICRGLSDPPVSLPCCQQTFCSLCIRQYLNSTTPRCPCCRKQSASNMLQMSKELRSICTTWKHNRRAIL 116
            PA   ++S+LRC IC+     PV L  C  TFCSLCIR+YLN  + RCP C  +    MLQ    L  +   +   R+ +L
Sbjct:   24 PALADLDSLLRCYICKDFLKSPV-LGQCGHTFCSLCIREYLNKES-RCPLCLSELRQTMLQKEFVLGEMVACFNGLRKRLL 102          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: G8JPV4_ERECY (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Eremothecium cymbalariae (strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL Y-17582) TaxID=931890 RepID=G8JPV4_ERECY)

HSP 1 Score: 58.5 bits (140), Expect = 4.520e-5
Identity = 35/81 (43.21%), Postives = 42/81 (51.85%), Query Frame = 0
Query:   36 PAFGSIESILRCAICRGLSDPPVSLPCCQQTFCSLCIRQYLNSTTPRCPCCRKQSASNMLQMSKELRSICTTWKHNRRAIL 116
            P    I+S+LRC IC+     PV L  C  TFCSLCIR YLN    RCP C  +   NMLQ    L  I  ++   R  +L
Sbjct:   22 PEIADIDSLLRCHICKEFLQTPV-LGHCGHTFCSLCIRTYLNKEA-RCPLCLVELRQNMLQKEFLLGEIVASYSRIRGRML 100          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: A0A1G4KHT4_9SACH (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Lachancea meyersii CBS 8951 TaxID=1266667 RepID=A0A1G4KHT4_9SACH)

HSP 1 Score: 58.2 bits (139), Expect = 5.930e-5
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 0
Query:   36 PAFGSIESILRCAICRGLSDPPVSLPCCQQTFCSLCIRQYLNSTTPRCPCCRKQSASNMLQMSKELRSICTTWKHNRRAILAAAN 120
            P    I+++LRC IC+G    PV  PC   TFCSLCIR+YLN    +CP C  +   +ML+    +  I  ++   R  +L   N
Sbjct:   26 PELQDIDTLLRCNICKGFLKTPVLTPC-GHTFCSLCIREYLNREQ-KCPLCLAELRESMLKSEFLVNEIAASYTKLRPKLLEFLN 108          
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Match: A0A0U1LMN2_TALIS (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Talaromyces islandicus TaxID=28573 RepID=A0A0U1LMN2_TALIS)

HSP 1 Score: 57.4 bits (137), Expect = 9.850e-5
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0
Query:   40 SIESILRCAICRGLSDPPVSLPCCQQTFCSLCIRQYLNSTTPRCPCCRKQSASNMLQMSKELRSICTTWKHNRRAILAAANA 121
            S+ES LRC +C+   D PV +  C  TFCSLCIR+ L S   +CP CR Q     L+ +  ++ +  +++  RR +L  A A
Sbjct:   23 SLESALRCQVCKDFFDNPV-ITSCSHTFCSLCIRRCL-SAEGKCPACRTQDQELKLRRNWAVQELVDSFQKVRRDLLNLAQA 102          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16529.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JRB6_9PHAE1.400e-22283.17RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LPZ5_ECTSI2.280e-9479.86RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LPZ3_ECTSI4.800e-8686.45SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
RAD18_ASHGO1.410e-549.18Postreplication repair E3 ubiquitin-protein ligase... [more]
R9X7K0_ASHAC1.940e-549.18Postreplication repair E3 ubiquitin-protein ligase... [more]
W2S882_9EURO2.800e-538.37Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A109V0B9_9SACH3.370e-540.74Postreplication repair E3 ubiquitin-protein ligase... [more]
G8JPV4_ERECY4.520e-543.21Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A1G4KHT4_9SACH5.930e-537.65Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A0U1LMN2_TALIS9.850e-539.02Postreplication repair E3 ubiquitin-protein ligase... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 217..237
NoneNo IPR availableGENE3D2.20.28.140coord: 817..862
e-value: 6.9E-8
score: 34.1
NoneNo IPR availablePANTHERPTHR14134:SF2E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 165..317
coord: 39..137
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 38..112
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 821..845
e-value: 1.2E-6
score: 38.0
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 822..847
e-value: 5.2E-6
score: 25.7
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 823..842
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 819..848
score: 9.337
IPR003034SAP domainSMARTSM00513sap_9coord: 168..202
e-value: 0.0039
score: 26.4
IPR003034SAP domainPROSITEPS50800SAPcoord: 168..202
score: 8.748
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 39..117
e-value: 2.0E-13
score: 51.8
IPR039577E3 ubiquitin-protein ligase Rad18PANTHERPTHR14134E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 39..137
coord: 165..317
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 47..87
score: 10.542
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 821..846

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:260367..268427 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16529.1mRNA_E-siliculosus-1a_M_contig84.16529.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig84 259964..268904 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig84.16529.1 ID=prot_E-siliculosus-1a_M_contig84.16529.1|Name=mRNA_E-siliculosus-1a_M_contig84.16529.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=975bp
MMSAARGGAAGAEEDKLEDEEDDDEVYQYPKAGLGPAFGSIESILRCAIC
RGLSDPPVSLPCCQQTFCSLCIRQYLNSTTPRCPCCRKQSASNMLQMSKE
LRSICTTWKHNRRAILAAANASATAPAAGAAPATAREQPAPSGRRKVCAV
GAGQGRDGDGGVVKAVHYHSLNDSKMKALLIRVGLPVGGGKAAMVARHKR
LVLLSAASNDREVPLPKAKLLRQVAAWEREKDKERLANAKTARAGLVSGS
TGSGGGSAQALRTAGIARAAAAAAAARDGSPPPESEQIVISKEMKDGFSA
LIASARSKAKKRPSTSTCSDGGGNSENKKARVCQDSDCGGGGGGNVDSAD
SVGDGGNVVRKDAGSCSNLNGRSAAVSGGASRNDAPGDAAEILGVAGRLV
RTRGPWRCIFSQGRQPSASVGEVRNNGTAEAAAAAAAGVMQPSASVGEVR
NNGTAEAAAAAAGVMRRTEGCKSAGERALSSAGGDGVERNGGCACNGVGE
SNGGGVDAAGTVGGDGRSGSEATEQLSVVAAAAADGRAGFGGDGEGRNRG
GGLEEGARPVREPRAEQGPVYLNTATMETAREPPPELVALADQAESAGDY
LVFVPSHRFVAAAAGAVPASASSHNSNVAAAPAFSHSNSNMDVDSSGSNP
AGASVLSHNSSNMDADSNAAVTVARMSEAASAVGAAAERVLQDVTAAGES
FSPPCSTTAVNAGTGSGGAAAAAAAVGSNTRRNSRGEQAQDTRQGSPLEA
STTPSTVAKAVLGGSSCSSSSGRRGGGGGGGTWDRLSSLPTIDLSQGVAS
APADVEDAGGAGGNAALTVAATWTCVACTLTNKARRTTCEVCGTSRPKAS
QQRRPSSSSLSVDSGGGGGDGGGHRRVGSVSKLRLRHPARSTSITPFTSR
PGGGGGGGGGGSATGAGGSTGAPTSSSSPQPPLSQSAGTTPINGFPSVRS
QERSSPPSAVAAAAAAAATEKARQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR001841Znf_RING
IPR039577Rad18
IPR013083Znf_RING/FYVE/PHD
IPR003034SAP_dom
IPR001876Znf_RanBP2