prot_E-siliculosus-1a_M_contig83.16472.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig83.16472.1
Unique Name	prot_E-siliculosus-1a_M_contig83.16472.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	1005

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig83.16472.1 vs. uniprot
Match: A0A6H5KR02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR02_9PHAE)

HSP 1 Score: 1570 bits (4064), Expect = 0.000e+0
Identity = 850/968 (87.81%), Postives = 864/968 (89.26%), Query Frame = 0

Query:   38 QRATYVTASATPEKQQHRRASSPSRSSFLSSSVLRPAAGTSWTRHETTPRRTMTSAQFGGGVDFSGVGGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGAGAERAX-TSVVGEGSDEISTRGAGGEGHQEATPPKKPRKRRQAAQTKYPFGKPLSVLASASTGFGAGSDAFFDIEDELPDLSVVEVAGHGDERGAMGTKELRERMAACPEVVVALSRGLAEGRARLVADNLCAYASTKRTAESTLAQLERLLGRRPDQVEWAMPLIRAHLTDESRPSWETHREQLSWVREMNIKEVGLEDMAESMLRAYARHQWGPDMTREKLRNEHPERWEEAMTLSEKLADRLPVCRYQLVWRTLCKFLEAEKTRRRHRVLGELATVLRTRTHLVLPAIANFWRVDLYQSSKGMEERVDAAKDGFLEDQLLLARWLMLARRKALPEDDEEFKGPWSIEEAQELQEARTREXXXXXXXXXXXXEDYVYPDFDDEGDEDLIRGYSMDDAGWSVEESRDSENRQKLNTAAIKVISRALPPQVPKSKSPAPLGLYELSVVERPPELDVPPPADIFGGDTPAGIGKAGAGEVPVLSGAADTTWRGKRRLSEESAWLEEGQEEGYGEDKPWWEGAGEEELPRSREKDYQEVEDVLLKGMRVKRPPDVKDMEEEQAIRERKEQLLRRAALVAELHPDTARQIELQMEEEGSRTVFVRRLPYGLSAYTVRDAFSRCGDVHQVIIKEPIFREGEDPVSRPNAGRKRAFRPSGQSELAFSTAHGLVVFSDHEGFDRATAESFRIFGVHIKGEAVATSPAYQCRTLFVENLEMRTGLEMVEAINEVLQPRYKVGLASQSLENNVPQVVAIPLRKYVAVRAVDKILTDAGFITAYHYIVPKASGGPPCIVRQSHPSEDELPDGGGMPEQDIPDEVAALSEDGFMTGASGELGEGGISLEDELPAHHR 1004
            QR TYVTA+ATP K  HR+ASSPS+SSFLSSSVLRPAAGTSWTRHE TP  TM SA FGGGVD SGVGG                                         XXXXXX TGGAG  RA  TSVVGE SD+ISTRGAGGE HQEA PPKKPRKRRQAAQTKYPFGKPLSVLASASTGFGAGSDAFFDIEDELPDLSVVEVAGHG ER AMGTKELRERMAACPEVVVALSRGLAEGRARLVADNLCAYASTKRTAESTLAQLERLLGRRPDQVEWAMPLIRAHLTDESRPSWETHREQLSWVREMNIKEVGLEDMAESMLRAYARHQW PDMTREKLRNEHPERW EAMTLSEKLADRLPVCRYQLVWRTLCKFLEAEKTRRRHRVLGELATVLRT THLVLPAIANFWRVDLYQSSKGMEERVDAAKD FLEDQLLLARWLMLARRKALPEDDEEFKGPWSIEEAQE+QEARTRE            EDYVYPDFDDEGDEDLIRGYSMDDAGWSVEESRDSE+RQKLNTAAIKVISRALPPQVPKSKSPAP+GLYELSVVERPPELDVPPP DIFGGDTPAGIGKAGAGEVP LSGAAD TWRGKRRLSEESAW EEGQEEG GE KPW EGAGEE+LPR+REKDYQEVEDVLLKGMRV+RPPD  DMEEEQA RERKEQLLRRAALVAELHPDTARQIELQMEEEGSRTVFVRRLPYGLSAYTVRDAFSRCGDVHQVIIKEPIFREGEDPVSRPNAGRKRAFRPSGQSELAFSTAHGLVVFSDHEGFDRAT ESFRIFGVHIKG AVATSPA+QCRTLFVENLEMRTGLEMVEAINEVLQPRYKVGLASQSLENNVPQVVAIPLRKYVAVRAVDKILTDAGFITAYHYI P+        VRQSHPSED+L D  GMPEQ IPDEVAALSEDG MTGASGELG+GGISLED LPAHHR
Sbjct:    2 QRVTYVTAAATPMKLHHRQASSPSQSSFLSSSVLRPAAGTSWTRHEATPGWTMASAHFGGGVDLSGVGGS-GCGGSSNSGWRNRRTFFVATTAGNDGAGQDGEAAAAAETXXXXXXXTGGAGPGRAEATSVVGERSDKISTRGAGGEEHQEAKPPKKPRKRRQAAQTKYPFGKPLSVLASASTGFGAGSDAFFDIEDELPDLSVVEVAGHGHERAAMGTKELRERMAACPEVVVALSRGLAEGRARLVADNLCAYASTKRTAESTLAQLERLLGRRPDQVEWAMPLIRAHLTDESRPSWETHREQLSWVREMNIKEVGLEDMAESMLRAYARHQWDPDMTREKLRNEHPERWREAMTLSEKLADRLPVCRYQLVWRTLCKFLEAEKTRRRHRVLGELATVLRTWTHLVLPAIANFWRVDLYQSSKGMEERVDAAKDAFLEDQLLLARWLMLARRKALPEDDEEFKGPWSIEEAQEMQEARTREQEREGKEEDGDEEDYVYPDFDDEGDEDLIRGYSMDDAGWSVEESRDSEHRQKLNTAAIKVISRALPPQVPKSKSPAPIGLYELSVVERPPELDVPPPPDIFGGDTPAGIGKAGAGEVPALSGAADRTWRGKRRLSEESAWPEEGQEEGDGEGKPWGEGAGEEKLPRAREKDYQEVEDVLLKGMRVRRPPD--DMEEEQATRERKEQLLRRAALVAELHPDTARQIELQMEEEGSRTVFVRRLPYGLSAYTVRDAFSRCGDVHQVIIKEPIFREGEDPVSRPNAGRKRAFRPSGQSELAFSTAHGLVVFSDHEGFDRATGESFRIFGVHIKGAAVATSPAHQCRTLFVENLEMRTGLEMVEAINEVLQPRYKVGLASQSLENNVPQVVAIPLRKYVAVRAVDKILTDAGFITAYHYIKPQ--------VRQSHPSEDKLLDT-GMPEQHIPDEVAALSEDGLMTGASGELGKGGISLEDVLPAHHR 957

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BLAST of mRNA_E-siliculosus-1a_M_contig83.16472.1 vs. uniprot
Match: D7FT58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT58_ECTSI)

HSP 1 Score: 1065 bits (2753), Expect = 0.000e+0
Identity = 559/647 (86.40%), Postives = 569/647 (87.94%), Query Frame = 0

Query:  358 MAESMLRAYARHQWGPDMTREKLRNEHPERWEEAMTLSEKLADRLPVCRYQLVWRTLCKFLEAEKTRRRHRVLGELATVLRTRTHLVLPAIANFWRVDLYQSSKGMEERVDAAKDGFLEDQLLLARWLMLARRKALPEDDEEFKGPWSIEEAQELQEARTREXXXXXXXXXXXXEDYVYPDFDDEGDEDLIRGYSMDDAGWSVEESRDSENRQKLNTAAIKVISRALPPQVPKSKSPAPLGLYELSVVERPPELDVPPPADIFGGDTPAGIGKAGAGEVPVLSGAADTTWRGKRRLSEESAWLEEGQEEGYGEDKPWWEGAGEEELPRSREKDYQEVEDVLLKGMRVKRPPDVKDMEEEQAIRERKEQLLRRAALVAELHPDTARQIELQMEEEGSRTVFVRRLPYGLSAYTVRDAFSRCGDVHQVIIKEPIFREGEDPVSRPNAGRKRAFRPSGQSELAFSTAHGLVVFSDHEGFDRATAESFRIFGVHIKGEAVATSPAYQCRTLFVENLEMRTGLEMVEAINEVLQPRYKVGLASQSLENNVPQVVAIPLRKYVAVRAVDKILTDAGFITAYHYIVPKASGGPPCIVRQSHPSEDELPDGGGMPEQDIPDEVAALSEDGFMTGASGELGEGGISLEDELPAHHR 1004
            MAESMLRAYARHQWGPDMTREKLRNEHPERWEEAMTL+EKLADRLPVCRYQLVW TLCKFLEAEKTRRRHRVLGELATVLRTRTHLVLPAIANFWRVDLYQSSKGMEERVDAAKDGFLEDQLLLARWLMLARRKALPEDDEEFKGPWSIEEAQE+QEARTRE            EDYVYPDFDDEGDEDLIRGYSMDDAGWSV+ESRDSE+RQKLNTAAIKVISRALPPQVPK KSPAPLGLYELSVVERPPELDVPPPADIFGGDTPAGIGKAGAGEVPV+SGAAD TWRGKRRLSEESAW EEGQEEG GE+KPWWEGAGEEELPR+REKDYQEVEDVLLKGMRVKRPPD K                                            VFVRRLPYGLSAYTVRDAFSRCG VHQVIIKEPIFREGEDPVSRPNAGR+R FRPSGQSELAFSTAHGLVVFSDH+GFDRATAESFRIFGVHI+G AVATSPAYQCRTLFVENLEMRTGLEMVEAINEVLQPRYKVGLASQSLENNVPQVVAIPLRKYVAVRAVDKILTDAGFITAYHYIVPK        VRQSHPSEDELPD  GMPEQ IPDEVAALSEDG MTGASGELGEGGISLED LPAHHR
Sbjct:    1 MAESMLRAYARHQWGPDMTREKLRNEHPERWEEAMTLAEKLADRLPVCRYQLVWGTLCKFLEAEKTRRRHRVLGELATVLRTRTHLVLPAIANFWRVDLYQSSKGMEERVDAAKDGFLEDQLLLARWLMLARRKALPEDDEEFKGPWSIEEAQEMQEARTREQEREGKEDDGDEEDYVYPDFDDEGDEDLIRGYSMDDAGWSVKESRDSEHRQKLNTAAIKVISRALPPQVPKPKSPAPLGLYELSVVERPPELDVPPPADIFGGDTPAGIGKAGAGEVPVMSGAADRTWRGKRRLSEESAWPEEGQEEGGGENKPWWEGAGEEELPRAREKDYQEVEDVLLKGMRVKRPPDAK--------------------------------------------VFVRRLPYGLSAYTVRDAFSRCGAVHQVIIKEPIFREGEDPVSRPNAGRRRGFRPSGQSELAFSTAHGLVVFSDHDGFDRATAESFRIFGVHIEGAAVATSPAYQCRTLFVENLEMRTGLEMVEAINEVLQPRYKVGLASQSLENNVPQVVAIPLRKYVAVRAVDKILTDAGFITAYHYIVPK--------VRQSHPSEDELPDA-GMPEQGIPDEVAALSEDGVMTGASGELGEGGISLEDVLPAHHR 594

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig83.16472.1 vs. uniprot
Match: D7FT59_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT59_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.820e-34
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0

Query:  253 MGTKELRERMAACPEVVVALSRGLAEGRARLVADNLCAYASTKRTAESTLAQLERLLGRRPDQVEWAMPLI 323
            MGTKELRERMAACPEVVVALSRGLAEGRARLVADNLC YASTKRTAESTLAQLERLLGRRPDQVEWAMPLI
Sbjct:    1 MGTKELRERMAACPEVVVALSRGLAEGRARLVADNLCVYASTKRTAESTLAQLERLLGRRPDQVEWAMPLI 71

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig83.16472.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig83.16472.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5KR02_9PHAE	0.000e+0	87.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FT58_ECTSI	0.000e+0	86.40	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FT59_ECTSI	1.820e-34	98.59	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 745..860 e-value: 2.0E-7 score: 32.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 754..860 score: 8.501
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 747..840

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig83	contig	E-siliculosus-1a_M_contig83:269799..287724 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig83.16472.1	mRNA_E-siliculosus-1a_M_contig83.16472.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig83 269225..288298 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig83.16472.1 ID=prot_E-siliculosus-1a_M_contig83.16472.1|Name=mRNA_E-siliculosus-1a_M_contig83.16472.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1005bp
MLSLALARRVRCRQSGQATRLTRTAAAAARETRGIVRQRATYVTASATPE
KQQHRRASSPSRSSFLSSSVLRPAAGTSWTRHETTPRRTMTSAQFGGGVD
FSGVGGRCCGGSSSSGWRNRRTFFGVATTSGNDGGGQDGEAAAAAETEAA
ATATTGGAGAERAATSVVGEGSDEISTRGAGGEGHQEATPPKKPRKRRQA
AQTKYPFGKPLSVLASASTGFGAGSDAFFDIEDELPDLSVVEVAGHGDER
GAMGTKELRERMAACPEVVVALSRGLAEGRARLVADNLCAYASTKRTAES
TLAQLERLLGRRPDQVEWAMPLIRAHLTDESRPSWETHREQLSWVREMNI
KEVGLEDMAESMLRAYARHQWGPDMTREKLRNEHPERWEEAMTLSEKLAD
RLPVCRYQLVWRTLCKFLEAEKTRRRHRVLGELATVLRTRTHLVLPAIAN
FWRVDLYQSSKGMEERVDAAKDGFLEDQLLLARWLMLARRKALPEDDEEF
KGPWSIEEAQELQEARTREQEREGEEEDGDGEDYVYPDFDDEGDEDLIRG
YSMDDAGWSVEESRDSENRQKLNTAAIKVISRALPPQVPKSKSPAPLGLY
ELSVVERPPELDVPPPADIFGGDTPAGIGKAGAGEVPVLSGAADTTWRGK
RRLSEESAWLEEGQEEGYGEDKPWWEGAGEEELPRSREKDYQEVEDVLLK
GMRVKRPPDVKDMEEEQAIRERKEQLLRRAALVAELHPDTARQIELQMEE
EGSRTVFVRRLPYGLSAYTVRDAFSRCGDVHQVIIKEPIFREGEDPVSRP
NAGRKRAFRPSGQSELAFSTAHGLVVFSDHEGFDRATAESFRIFGVHIKG
EAVATSPAYQCRTLFVENLEMRTGLEMVEAINEVLQPRYKVGLASQSLEN
NVPQVVAIPLRKYVAVRAVDKILTDAGFITAYHYIVPKASGGPPCIVRQS
HPSEDELPDGGGMPEQDIPDEVAALSEDGFMTGASGELGEGGISLEDELP
AHHR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf