prot_E-siliculosus-1a_M_contig83.16460.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig83.16460.1
Unique Nameprot_E-siliculosus-1a_M_contig83.16460.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length250
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: A0A6H5K9V4_9PHAE (TFIID_20kDa domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V4_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.920e-81
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0
Query:   31 AAKSMAGMKPLHPVVVPPVEPEPKEAKLVGPMNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKMAGAERETKVGRARLNTAIAAERAKSAS 167
            AAKSMA MKPLHPVVVPPVEPEPKEAKLVGPMNGMRLPALMKEVDPAY+LHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKMAGAERETKVGRARLNTAIAAERAKSAS
Sbjct:  383 AAKSMAAMKPLHPVVVPPVEPEPKEAKLVGPMNGMRLPALMKEVDPAYSLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKMAGAERETKVGRARLNTAIAAERAKSAS 519          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: F6WT81_CIOIN (Transcription initiation factor TFIID subunit 12 n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6WT81_CIOIN)

HSP 1 Score: 78.2 bits (191), Expect = 4.390e-14
Identity = 39/97 (40.21%), Postives = 65/97 (67.01%), Query Frame = 0
Query:   51 PEPKEAKLVGPMNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKMAGAERET 147
            P+ K+ K+   +N  RL  L++E+DPA  L  D EE+L+ +  D IE V +A+ ELA+HRNS+T+E++DL+L L+K W++   G G+ ++   ++ T
Sbjct:   76 PQEKDNKI---LNRQRLQELIREIDPAEQLDEDVEEMLMQITDDFIENVVSASCELAKHRNSNTLEVKDLKLHLDKQWNISIPGYGSEEIKPFKKPT 169          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: A0A812BT81_SEPPH (Transcription initiation factor TFIID subunit 12 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812BT81_SEPPH)

HSP 1 Score: 75.5 bits (184), Expect = 4.230e-13
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 0
Query:   37 GMKPLHPV--VVPPVEPEPKEAKLVGPMNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKM 140
            G++P+ P   V  PV     E+K+   ++  RL  L+KEVDP   L  D EE+LL +A D IE V  AA ++A+HR S+ +E++D+QL LE++W+M   G G+  +
Sbjct:   57 GLRPVIPTTQVPTPVNSSTAESKV---LDRRRLQELVKEVDPLEQLDEDVEEVLLQIADDFIENVVTAACQIAKHRKSNVLEVKDVQLHLERNWNMWIPGFGSEDL 159          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: A0A2C9JVR7_BIOGL (Transcription initiation factor TFIID subunit 12 n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JVR7_BIOGL)

HSP 1 Score: 75.1 bits (183), Expect = 9.960e-13
Identity = 34/81 (41.98%), Postives = 56/81 (69.14%), Query Frame = 0
Query:   60 GPMNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKM 140
            G ++  RL  L+KEVDP   +  D E++LL +A D IE + +A+ +LA+HR S+T+E +D+QLCL++ W+M   G G+ ++
Sbjct:  107 GVLDKARLRDLVKEVDPLEQMDDDVEDVLLQVADDFIENIVSASCQLARHRRSNTLEAKDVQLCLDRGWNMQVPGFGSEEL 187          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: A0A210R188_MIZYE (Transcription initiation factor TFIID subunit 12 n=4 Tax=Pectinidae TaxID=6566 RepID=A0A210R188_MIZYE)

HSP 1 Score: 73.6 bits (179), Expect = 1.080e-12
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 0
Query:   30 GAAKSMAGMKPLHPVVVPPVEPEPKEAKLVGPMNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKM 140
            G A+   GM+  HP   P + P P        ++  RL  L+KEVDP   L  D EE+LL +A D I+ +  +A ++A+HR S T+E++D+QL LE++W+M   G G+ ++
Sbjct:   17 GIAQPPLGMRQPHPSPAP-MAPHPAAGGENKVLDKRRLQELVKEVDPLEQLDDDVEEVLLQVADDFIDSIVNSACQIAKHRKSTTLEVKDVQLHLERNWNMWIPGFGSDEL 126          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: A0A0C9SAU9_AMBAM (Transcription initiation factor TFIID subunit 12 (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9SAU9_AMBAM)

HSP 1 Score: 73.2 bits (178), Expect = 1.760e-12
Identity = 51/120 (42.50%), Postives = 66/120 (55.00%), Query Frame = 0
Query:   23 TAAGGGSGAAKSMAGMKPLHPVVVPPVEPEP--KEAKLVGPMNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKM 140
            +AA  G G A + A    L   VVP   PE        V  +N  RL  L+KEVDP   L  D EELLL +A D IE V   +  LA+HR S+ +E +D+QL LEK+W+M   G GA ++
Sbjct:   14 SAANAGVGGACAPALTTTLVKAVVPTNLPERHVNTGDGVQVLNKQRLQDLVKEVDPNEQLDDDVEELLLQVADDFIENVVTTSCLLAKHRKSNVLEAKDVQLSLEKNWNMWIPGFGAEEL 133          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: A0A6M2E3S0_9ACAR (Transcription initiation factor TFIID subunit 12 (Fragment) n=1 Tax=Amblyomma tuberculatum TaxID=48802 RepID=A0A6M2E3S0_9ACAR)

HSP 1 Score: 72.8 bits (177), Expect = 2.240e-12
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 0
Query:   62 MNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKM 140
            +N  RL  L+KEVDP   L  D EELLL +A D IE V   +  LA+HR S+ +E +D+QL LEK+W+M   G GA ++
Sbjct:   50 LNKQRLQDLVKEVDPNEQLDDDVEELLLQVADDFIENVVTTSCLLAKHRKSNVLEAKDVQLSLEKNWNMWIPGFGAEEL 128          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: V3Z331_LOTGI (Transcription initiation factor TFIID subunit 12 (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3Z331_LOTGI)

HSP 1 Score: 71.6 bits (174), Expect = 2.460e-12
Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 0
Query:   62 MNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWL-GIGA 137
            ++  RL  L+KEVDP   L  D EE+LL +A D IE V ++A ++A+HR S+T+E++D+QL LE+ W+M WL G G+
Sbjct:   14 LDKRRLQELVKEVDPLEQLDDDVEEVLLQVADDFIENVVSSACQIAKHRKSNTLEVKDVQLYLERTWNM-WLPGFGS 89          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: A0A0B6ZV35_9EUPU (Transcription initiation factor TFIID subunit 12 n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZV35_9EUPU)

HSP 1 Score: 73.9 bits (180), Expect = 2.880e-12
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   60 GPMNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARK 139
            G ++ +RL  L+KEVDP   +  D E++LL +A D IE V AA+ +LA+HR S+T+E +D+QL LE+ W+M   G GA +
Sbjct:  112 GVLDKIRLRDLVKEVDPLEQMDDDVEDVLLQVADDFIENVVAASCQLAKHRRSNTLEAKDVQLYLERCWNMQVPGFGAEE 191          
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Match: A0A293M2G8_ORNER (Transcription initiation factor TFIID subunit 12 (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A293M2G8_ORNER)

HSP 1 Score: 73.9 bits (180), Expect = 2.970e-12
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 0
Query:   62 MNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVAAAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKM 140
            +N  RL  L++EVDP   L  D EELLL +A D IE +  ++  LA+HR S T+E +D+QL LEK+W+M   G GA +M
Sbjct:  116 LNKQRLQDLVREVDPNEQLDDDVEELLLQIADDFIENLVTSSCLLAKHRKSTTLETKDIQLSLEKNWNMWIPGFGAEEM 194          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig83.16460.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9V4_9PHAE1.920e-8198.54TFIID_20kDa domain-containing protein n=1 Tax=Ecto... [more]
F6WT81_CIOIN4.390e-1440.21Transcription initiation factor TFIID subunit 12 n... [more]
A0A812BT81_SEPPH4.230e-1340.57Transcription initiation factor TFIID subunit 12 n... [more]
A0A2C9JVR7_BIOGL9.960e-1341.98Transcription initiation factor TFIID subunit 12 n... [more]
A0A210R188_MIZYE1.080e-1237.84Transcription initiation factor TFIID subunit 12 n... [more]
A0A0C9SAU9_AMBAM1.760e-1242.50Transcription initiation factor TFIID subunit 12 (... [more]
A0A6M2E3S0_9ACAR2.240e-1248.10Transcription initiation factor TFIID subunit 12 (... [more]
V3Z331_LOTGI2.460e-1248.05Transcription initiation factor TFIID subunit 12 (... [more]
A0A0B6ZV35_9EUPU2.880e-1246.25Transcription initiation factor TFIID subunit 12 n... [more]
A0A293M2G8_ORNER2.970e-1248.10Transcription initiation factor TFIID subunit 12 (... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003228Transcription initiation factor TFIID subunit 12 domainPFAMPF03847TFIID_20kDacoord: 66..130
e-value: 2.5E-17
score: 63.1
IPR009072Histone-foldGENE3D1.10.20.10coord: 62..130
e-value: 1.2E-18
score: 68.9
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 67..130
IPR037794Transcription initiation factor TFIID subunit 12PANTHERPTHR12264FAMILY NOT NAMEDcoord: 67..190
NoneNo IPR availablePANTHERPTHR12264:SF21TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12coord: 67..190
NoneNo IPR availablePRODOMPD012998coord: 66..140
e-value: 1.0E-12
score: 176.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig83contigE-siliculosus-1a_M_contig83:122097..125077 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig83.16460.1mRNA_E-siliculosus-1a_M_contig83.16460.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig83 121475..125722 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig83.16460.1 ID=prot_E-siliculosus-1a_M_contig83.16460.1|Name=mRNA_E-siliculosus-1a_M_contig83.16460.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=250bp
MYTYPCVSVSRPAGPADSVASATAAGGGSGAAKSMAGMKPLHPVVVPPVE
PEPKEAKLVGPMNGMRLPALMKEVDPAYTLHPDTEELLLALAQDHIEGVA
AAAVELAQHRNSDTVELQDLQLCLEKDWDMPWLGIGARKMAGAERETKVG
RARLNTAIAAERAKSASSSGSASAAWRKKASKRRSAESAAAAAAAAAAAA
ASASNNGGSGGGGGGGGSSTVKRPRQTEAGGGAAGGAVGGGAVEVQGAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037794TAF12
IPR009072Histone-fold
IPR003228TFIID_TAF12_dom