prot_E-siliculosus-1a_M_contig82.16409.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig82.16409.1
Unique Name	prot_E-siliculosus-1a_M_contig82.16409.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	135

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: D7FWI4_ECTSI (Histone H2A n=3 Tax=Ochrophyta TaxID=2696291 RepID=D7FWI4_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 4.110e-80
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query:    1 MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI 134
            MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI
Sbjct:    1 MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI 134

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: A0A7S2LGK2_9STRA (Histone H2A n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGK2_9STRA)

HSP 1 Score: 218 bits (555), Expect = 5.650e-71
Identity = 121/131 (92.37%), Postives = 127/131 (96.95%), Query Frame = 0

Query:    1 MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTK 131
            MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGR+HRFLK+ V S QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK+ K
Sbjct:    1 MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKTSVMSSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSNK 131

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: F0XY44_AURAN (Histone H2A n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XY44_AURAN)

HSP 1 Score: 216 bits (550), Expect = 2.510e-70
Identity = 119/133 (89.47%), Postives = 129/133 (96.99%), Query Frame = 0

Query:    1 MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKR 133
            MSGKGGKXXXXXXXXXAPTSKKAPQ++S KAGLQFPVGR+HRFLK RV + QRVGAT+AVYTAAILEYLTAEVLELAGNACKDLK+KRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK++KK+
Sbjct:    1 MSGKGGKXXXXXXXXXAPTSKKAPQTKSLKAGLQFPVGRLHRFLKLRVTASQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKMKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKKK 133

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: B7G2A5_PHATC (Histone H2A n=4 Tax=Bacillariophyta TaxID=2836 RepID=B7G2A5_PHATC)

HSP 1 Score: 215 bits (547), Expect = 7.680e-70
Identity = 119/132 (90.15%), Postives = 125/132 (94.70%), Query Frame = 0

Query:    1 MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 132
            MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGR+HRFLK+ VH   RVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSL+NK+  K
Sbjct:    1 MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKNSVHQGHRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSQGK 132

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: A0A7S2GSD6_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GSD6_9STRA)

HSP 1 Score: 214 bits (544), Expect = 3.490e-69
Identity = 119/131 (90.84%), Postives = 124/131 (94.66%), Query Frame = 0

Query:    1 MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTK 131
            MSGKGG XXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGR+HRFLK  V   QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK +K
Sbjct:   16 MSGKGGXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKHSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKQSK 146

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: B8BS24_THAPS (Histone H2A (Fragment) n=9 Tax=Bacillariophyta TaxID=2836 RepID=B8BS24_THAPS)

HSP 1 Score: 207 bits (528), Expect = 4.640e-67
Identity = 109/130 (83.85%), Postives = 114/130 (87.69%), Query Frame = 0

Query:    3 GKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 132
            GKGGK         APT KKAPQSRSSKAGLQFPVGR+HRFLK  V   QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK+T K
Sbjct:    2 GKGGKGGK------APTIKKAPQSRSSKAGLQFPVGRVHRFLKKSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSTGK 125

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: A0A7S3PQG1_9STRA (Histone H2A n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQG1_9STRA)

HSP 1 Score: 207 bits (528), Expect = 4.960e-67
Identity = 117/133 (87.97%), Postives = 123/133 (92.48%), Query Frame = 0

Query:    1 MSGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKKR 133
            MSGKGGKXXXXXXX   PTSKKAPQSRSS+AGLQFPVGR+HRFLK+R+ S  RVGAT+AVYTAAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNK  K +
Sbjct:    1 MSGKGGKXXXXXXX---PTSKKAPQSRSSRAGLQFPVGRVHRFLKARISSKNRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKGKKTK 130

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: A0A835Z1F5_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F5_9STRA)

HSP 1 Score: 206 bits (524), Expect = 3.880e-66
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0

Query:   21 KKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 132
            KKAPQSRS +AGLQFPVGRIHRFLKSRV + QRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL++KT KK
Sbjct:   28 KKAPQSRSQRAGLQFPVGRIHRFLKSRVQTQQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLISKTQKK 139

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: A0A482SNT5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNT5_9ARCH)

HSP 1 Score: 206 bits (524), Expect = 4.010e-66
Identity = 102/112 (91.07%), Postives = 109/112 (97.32%), Query Frame = 0

Query:   18 PTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKT 129
            P SK+APQSRSS+AGLQFPVGRIHRFLK+RVHS QRVGAT+AVYT+AI+EYLTAEVLELAGNACKDLKVKRITPRHL LAIRGDEELDTLIKATIAGGGVIPHIHKSL+NKT
Sbjct:   25 PASKRAPQSRSSRAGLQFPVGRIHRFLKARVHSQQRVGATAAVYTSAIMEYLTAEVLELAGNACKDLKVKRITPRHLLLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKT 136

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Match: K0TER1_THAOC (Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER1_THAOC)

HSP 1 Score: 206 bits (525), Expect = 7.520e-66
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 0

Query:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTKK 132
            SGKG  XXXXXXXXXAPT KKAPQSRSSKAGLQFPVGR+HRFLK+ V   QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK+  K
Sbjct:   47 SGKGXXXXXXXXXXXAPTIKKAPQSRSSKAGLQFPVGRVHRFLKNSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSQGK 177

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig82.16409.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI4_ECTSI	4.110e-80	100.00	Histone H2A n=3 Tax=Ochrophyta TaxID=2696291 RepID...	[more]
A0A7S2LGK2_9STRA	5.650e-71	92.37	Histone H2A n=1 Tax=Leptocylindrus danicus TaxID=1...	[more]
F0XY44_AURAN	2.510e-70	89.47	Histone H2A n=2 Tax=Pelagomonadales TaxID=54409 Re...	[more]
B7G2A5_PHATC	7.680e-70	90.15	Histone H2A n=4 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
A0A7S2GSD6_9STRA	3.490e-69	90.84	Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740...	[more]
B8BS24_THAPS	4.640e-67	83.85	Histone H2A (Fragment) n=9 Tax=Bacillariophyta Tax...	[more]
A0A7S3PQG1_9STRA	4.960e-67	87.97	Histone H2A n=1 Tax=Aplanochytrium stocchinoi TaxI...	[more]
A0A835Z1F5_9STRA	3.880e-66	92.86	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A482SNT5_9ARCH	4.010e-66	91.07	Uncharacterized protein n=1 Tax=archaeon TaxID=190...	[more]
K0TER1_THAOC	7.520e-66	88.55	Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 82..96 score: 65.78 coord: 68..81 score: 84.01 coord: 23..45 score: 68.94 coord: 53..68 score: 65.77 coord: 109..127 score: 52.13
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 12..132 e-value: 1.3E-69 score: 247.2
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 8..134 e-value: 4.5E-55 score: 187.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 10..109
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 102..132 e-value: 3.3E-13 score: 49.1
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..101 e-value: 2.1E-18 score: 66.9
None	No IPR available	PANTHER	PTHR23430:SF7	HISTONE H2A.V	coord: 14..132
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 14..132
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 31..37

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig82	contig	E-siliculosus-1a_M_contig82:415521..416736 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig82.16409.1	mRNA_E-siliculosus-1a_M_contig82.16409.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig82 415466..417873 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig82.16409.1 ID=prot_E-siliculosus-1a_M_contig82.16409.1|Name=mRNA_E-siliculosus-1a_M_contig82.16409.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=135bp
MSGKGGKGGKGGKGGKAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHS
HQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRG
DEELDTLIKATIAGGGVIPHIHKSLVNKTTKKRI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032458	Histone_H2A_CS
IPR007125	Histone_H2A/H2B/H3
IPR032454	Histone_H2A_C
IPR009072	Histone-fold
IPR002119	Histone_H2A