prot_E-siliculosus-1a_M_contig82.16396.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig82.16396.1
Unique Name	prot_E-siliculosus-1a_M_contig82.16396.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	123

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 2.590e-75
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKAVKK 122
            MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 8.970e-74
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKAVK 121
            MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct:   46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.510e-69
Identity = 110/119 (92.44%), Postives = 118/119 (99.16%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKA 119
            MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct:    1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 1.810e-68
Identity = 110/119 (92.44%), Postives = 118/119 (99.16%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKA 119
            MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct:   52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 170

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.410e-67
Identity = 106/118 (89.83%), Postives = 115/118 (97.46%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
            MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 2.020e-65
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKAV 120
            MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK V
Sbjct:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 120

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.220e-64
Identity = 105/122 (86.07%), Postives = 116/122 (95.08%), Query Frame = 0

Query:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKAVK 121
            MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK+ K
Sbjct:    1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA)

HSP 1 Score: 200 bits (508), Expect = 3.640e-64
Identity = 103/119 (86.55%), Postives = 113/119 (94.96%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKA 119
            MSGKGKGGRGKKSTT SAKAGLQFPVGR+GR+LK+GK+A+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI PRHI LAV+NDEELNKLLG VTIA GGVLPNIH+VLLPKKA
Sbjct:    1 MSGKGKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPKKA 119

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 199 bits (506), Expect = 4.980e-64
Identity = 104/122 (85.25%), Postives = 116/122 (95.08%), Query Frame = 0

Query:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKAVK 121
            MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK+ K
Sbjct:    1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122

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BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA)

HSP 1 Score: 200 bits (508), Expect = 7.220e-64
Identity = 104/122 (85.25%), Postives = 115/122 (94.26%), Query Frame = 0

Query:    1 MSGKGKGGRGK----KSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
            MSGKGKGGRGK    KSTTRSA+AGLQFPVGR+ RFL+KG++A+RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RIIPRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 122

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig82.16396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	2.590e-75	99.18	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	8.970e-74	99.17	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KG79_9PHAE	3.510e-69	92.44	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D7FVQ5_ECTSI	1.810e-68	92.44	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
D8LLP0_ECTSI	1.410e-67	89.83	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A6H5KGY1_9PHAE	2.020e-65	99.17	Integrase catalytic domain-containing protein n=7 ...	[more]
A0A6U2JFS4_9STRA	1.220e-64	86.07	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
A0A7S2GRL8_9STRA	3.640e-64	86.55	Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740...	[more]
A0A448ZH28_9STRA	4.980e-64	85.25	Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A7S0DT92_9EUKA	7.220e-64	85.25	Histone H2A n=1 Tax=Amorphochlora amoebiformis Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 12..34 score: 68.99 coord: 56..69 score: 90.54 coord: 98..116 score: 76.04 coord: 70..84 score: 77.52 coord: 41..56 score: 90.36
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 3..121 e-value: 4.5E-79 score: 278.7
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 2..122 e-value: 7.1E-62 score: 209.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 2..121
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 11..87 e-value: 1.5E-15 score: 57.7
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 90..122 e-value: 5.4E-19 score: 67.6
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 5..122
None	No IPR available	PANTHER	PTHR23430:SF251		coord: 5..122
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 20..26

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig82	contig	E-siliculosus-1a_M_contig82:343149..343517 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig82.16396.1	mRNA_E-siliculosus-1a_M_contig82.16396.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig82 343149..343517 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig82.16396.1 ID=prot_E-siliculosus-1a_M_contig82.16396.1|Name=mRNA_E-siliculosus-1a_M_contig82.16396.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=123bp
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYL
AAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVT
IASGGVLPNIHAVLLPKKAVKK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032458	Histone_H2A_CS
IPR032454	Histone_H2A_C
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR002119	Histone_H2A