prot_E-siliculosus-1a_M_contig81.16355.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig81.16355.1
Unique Name	prot_E-siliculosus-1a_M_contig81.16355.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	1639

Homology

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig81.16355.1 vs. uniprot
Match: A0A6H5JST5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST5_9PHAE)

HSP 1 Score: 1971 bits (5107), Expect = 0.000e+0
Identity = 1267/1600 (79.19%), Postives = 1312/1600 (82.00%), Query Frame = 0

Query:   68 NKASIKTEGFSTEPTNDSGKPSPAPSSSTPTTPKSGSDPLKSAASVGDGGAVSAPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQQEE-NAQDSAETLSERGSAAGEGNLDDALSGALCAPRNVGNPPPGAAVSSGEPAGNTSTEGMAGKDVPKPKVGITV-----EAGRKQEYWGGQSEGMFRKRVSEELKAMLRSCGGRCEMSSIAKLFKRHHKRVLNLQGKKLRALLTTGSGLYGIGLYGHGQDGEIRLEEKSVVKDSNSDAATGPNSVGDGGSTQPLTRTFVNQNALRNQDSRSRGRSPGGRGDSYDEPDQPPPGGAGHSSRSALVRPTSGPLGNSVGYARSRPDASGAPARSRRDGDARVGR-EWSRSXXXXXXXXXXXXXXSWDKGVSGGHRRDERLRPAHGASRSSSRGRRFSRTTGRPSPHERNSPQQRRRGRSPSPRGRIPSSRELSPRSSRGQRRGTTPPXXSSSRRNSGNWRRSHSRSPRWRSPYRRGSXXXXXXXXXXXXXXXXSSPRGIGGHDSAERGPTHRSREDHLDRSSDPRGRHRSTRPAADRDRDMPSRAVSSRKAARERSLVRPEGDGMRPGDSARQGGCVGASRRSGRSASPVGYGTEPLRGTPEEARKGQENGSSTVGRGAVGGQMMDPVIPLALGGTPAPPVAAAVGGRPTIXXXXXXXXXXXXXXXXXXXXXXXRLVEGTVGSGGGFPSNFDPPGKLYHAGAGPPGSGDGYSVGSGHPMAGDWLNGDGGGGSQVGLGQGRAVPPHPAPALLPPPSSLRPLPPMPVRAQGTRLMIKGTHPAVPERRIHALVSTFGVVGKIEVLEGFVFVHMKSLEEATRAVTGLNGEVVPHVSPQASDGAGAASLPLAAAIWREEQYQAVMSRENMRIYADSIRRASTWYEKQTKSGFNDTLGEPMRCRFFILGRGCIFGKNCGFSHDQRPPLPRAAASTHGVAGGPGFAAPLSKPPSVIPSPAFAPTSSSRAGVVPNPFAQERVPVLAHHEQSPTLTFVHRHEMHRRSGPGAQEDLKPDPTGAYTGSGVGVASPWQPEHEAGGISGAGQVLPQPGATSARNVDRQEQTRGGTSSQPFPSPPTLRNGPGRMRSSASPTTNSGNTRRSGHQNKSHSHGADGPGGXXXXXXXXXXXRRDRDGRNSGGRSSWREEPHGRISDRERNDTRRSSPVSSRGRSRRDASPISAHARKRGRGSSSHRSSPPRISGGYEKNDDRVSRYSRNGLQQPGRGHSGSRRSESLESVPGRGSRRHRLDGRPRQRRDSRSTSRPQSRDDRGDRNGRSSXXXXXXXXXXXXXXN----------------------ASPVGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGERGMFLGRRGGGRRGSDNVSHGWASPADNPGAFSRGDHSRSYGGAPRGDFYNAGSSGVPRREERYGADRSTSPNGSAGWDSMVKDEFXXXXXXXXDDPPRPIKTQFTVTARLGSLQ-PPPVSAPAGAARPSTRFSITMPSNIAGALGPTSPSGGVRRGGRPARGRGRGGRGDTRRDAANRRPPRDVQDDEGYTR 1637
            NKASIKTE FST+PTNDSGKPSPAPSSSTPTTPKSG D L+SAASVG+G AVSAPAT   XXXXXXXXXXXXXXXXXXXXXX             KQQEE NA+DSA+TLSERGSA GEG+LDDALSGALCAPRNVGNP PGAAV+S EPAGN  TEGMAGK+V KPKVGITV     EAGRKQE WGGQSEGMFRKRVSEELKAMLRSCGGRCEMSSIAKLFKR HKRVLNLQGKKLRALLTTGSGLYGIGLYGHGQDGEIRLEEKS VKDSNSDAATGPNSVGD GSTQPLTRTFVN +ALRNQ SRSRGRSP GRG + DEPDQ PPGGAGHSSRSA+VRPT  PLGNSVG  RSRPDA GAP RSR DGDARVGR EWSR XXXXXXXXXXXXXXSWDKGVSGGHR+DE LRP HGASRSS   R+ SRT GR SPHER+SPQQRRRGR       IPSSRE SPR SRG+ RGT P   SSSRRNSG W RSHSRSPR RSP RRG XXXXXXXXXXXXXXXXS PR +G HDSA+ GPT+RS  DHL+ S DPRG H STRPAA RDRDM S AVSSRKA RERSL RPE DGMRPGD  RQGGC+GASRR GRSAS VGY TEPLRGTPEEARKGQENG S VGRGAVGGQ MDPVIPLALGGT APPVA A  GRP  XXXXXXXXXXXXXXXXXX      LVEGTVGSGGGFPSNFD P KL  AGAGP GS  GYS G+G PMAGDWL GDGGGGSQ G+GQ R  PPHPAPALLPP  SLRPLPPM VRAQG RLMIKGTHPAVPERRIHALVSTFGVVGKIEVLEGFVFVHMKSLEEATRAVTGLNGEVVPHVSPQA+D AGAA LPLAAAIWREEQYQA+MSRENMRIYADS+RRASTWYEKQTKSGFNDTLG+ M CRFF LGRGCIFG NCGFSH+QRP  PRAAASTH  AGGPGFAA L KPPSVIPS A APT SSR GV PNP  Q RV +LAHHEQSPTLTFVHR EMHRRSGPGAQEDLKPDPTGAYT SGVGVA PWQPEHE G IS  GQVLPQPGATS RNVDRQE  RGGTSSQ FPSPP LRNG GRMRS A+PTTN  NTRRSG+Q +SHSH A+G GG           +RDR GRNSGG SSWREEP GR SDRE ND+RRSSPVSSRGRSRRDASPISAHA KRGRGSSSHRSSPPR SGG+E ND+RVSR SR  +QQPGRGHSGS R ESLESVPGRGSR H LD R RQ RDSRST+RP+SR D         XXXXXXXXXXXXXX                       ASPVGK  XXXXXXXXXXXXXXXX                              XXXXXXGGERGMF GRRGGGRRGSD+VSHGW+SPADNPGAFSR DHSRSYGGAPRGD YNAGS GVPRRE RY AD S+SPNGSAGWDSMVK+EF        +DPPRP+KTQFTVTARLGSLQ PPPVSAPAGA  PSTRFSITMPSNI GALGPTSPSGGVRRGGRPARGRGRGGRGD  RDAA RRPPRDVQDDEGYTR
Sbjct:   50 NKASIKTEAFSTDPTNDSGKPSPAPSSSTPTTPKSGFDALQSAASVGNGDAVSAPATAPAXXXXXXXXXXXXXXXXXXXXXXPSGTPKSSSAVAVKQQEEGNARDSAKTLSERGSAEGEGDLDDALSGALCAPRNVGNPAPGAAVASDEPAGNAFTEGMAGKEVSKPKVGITVGRVEVEAGRKQEDWGGQSEGMFRKRVSEELKAMLRSCGGRCEMSSIAKLFKRRHKRVLNLQGKKLRALLTTGSGLYGIGLYGHGQDGEIRLEEKSAVKDSNSDAATGPNSVGDRGSTQPLTRTFVNHSALRNQGSRSRGRSPWGRGGTCDEPDQGPPGGAGHSSRSAIVRPTLDPLGNSVGSMRSRPDAVGAPTRSRMDGDARVGRGEWSRXXXXXXXXXXXXXXXSWDKGVSGGHRKDESLRPTHGASRSSPSVRKSSRTAGRLSPHERHSPQQRRRGR-------IPSSRESSPRGSRGECRGTIPRRRSSSRRNSGKWHRSHSRSPR-RSPCRRGXXXXXXXXXXXXXXXXXSPPRRVGRHDSAKPGPTNRSCGDHLNVSFDPRGTHGSTRPAARRDRDMLSHAVSSRKATRERSLERPEPDGMRPGDGGRQGGCIGASRRRGRSASLVGYVTEPLRGTPEEARKGQENGRSAVGRGAVGGQTMDPVIPLALGGTRAPPVAGAARGRPXXXXXXXXXXXXXXXXXXXXSSGTRCLVEGTVGSGGGFPSNFDLPRKLNDAGAGPTGSAGGYSEGNGRPMAGDWLIGDGGGGSQEGVGQLRRFPPHPAPALLPPHFSLRPLPPMLVRAQGARLMIKGTHPAVPERRIHALVSTFGVVGKIEVLEGFVFVHMKSLEEATRAVTGLNGEVVPHVSPQATDRAGAAPLPLAAAIWREEQYQALMSRENMRIYADSMRRASTWYEKQTKSGFNDTLGKAMPCRFFSLGRGCIFGNNCGFSHEQRPRHPRAAASTHEGAGGPGFAARLPKPPSVIPSRAVAPTLSSRTGVEPNPSGQGRVSLLAHHEQSPTLTFVHRDEMHRRSGPGAQEDLKPDPTGAYTASGVGVAMPWQPEHEVGVISAVGQVLPQPGATSDRNVDRQEHARGGTSSQAFPSPPALRNGAGRMRSPATPTTNLDNTRRSGYQYESHSHRANGRGGGGCRDSGGGDSKRDRGGRNSGGSSSWREEPLGRNSDREHNDSRRSSPVSSRGRSRRDASPISAHAXKRGRGSSSHRSSPPRGSGGFENNDERVSRSSRKAVQQPGRGHSGSPRRESLESVPGRGSRGHHLDRRSRQCRDSRSTNRPRSRRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSRDCASPVGKARXXXXXXXXXXXXXXXXSESGDSKLDGRRSKKSRNERETSRGRGSDRXXXXXXGGERGMFSGRRGGGRRGSDDVSHGWSSPADNPGAFSRDDHSRSYGGAPRGDLYNAGSGGVPRREGRYVADCSSSPNGSAGWDSMVKEEFM-------EDPPRPVKTQFTVTARLGSLQQPPPVSAPAGADNPSTRFSITMPSNITGALGPTSPSGGVRRGGRPARGRGRGGRGDIPRDAARRRPPRDVQDDEGYTR 1634

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig81.16355.1 vs. uniprot
Match: D7G6Q3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q3_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 3.030e-94
Identity = 227/263 (86.31%), Postives = 235/263 (89.35%), Query Frame = 0

Query:   43 MKSEASXXXXXXXXXXXXXXXXXXVNKASIKTEGFSTEPTNDSGKPSPAPSSSTPTTPKSGSDPLKSAASVGDGGAVSAPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQQEE-NAQDSAETLSERGSAAGEGNLDDALSGALCAPRNVGNPPPGAAVSSGEPAGNTSTEGMAGKDVPKPKVGIT-----VEAGRKQEYWGGQSEGMFRKRVSEELKAMLRSCGGRCEMSSIAKLFKRHHKRVLNLQGKKL 299
            MKSEAS  XXXXXXXXXXXXXXXXVNKASIKTEGFSTEPT+DSGKP PAPSSSTPTTPKSGSDPL+SAASVGDGGAVSAPAT XXXXXXXXXXXXXXXXXXXXXXXX             KQQEE NA+DSAETLSERGSA GEG+LDDALSGALCAPRNVGNPPPGAAV+SGEPAG+ STEGMAGKDV KPKVGIT     VEAGRKQEYWGGQSEGMFRKRVSEELKAMLRSCGGRCEMSSIAKLFKR HKR +NLQGKK+
Sbjct:    1 MKSEASVKXXXXXXXXXXXXXXXXVNKASIKTEGFSTEPTSDSGKPLPAPSSSTPTTPKSGSDPLQSAASVGDGGAVSAPATAXXXXXXXXXXXXXXXXXXXXXXXXPSGTSKASPAVAGKQQEEENARDSAETLSERGSAEGEGDLDDALSGALCAPRNVGNPPPGAAVASGEPAGDASTEGMAGKDVLKPKVGITAGRVEVEAGRKQEYWGGQSEGMFRKRVSEELKAMLRSCGGRCEMSSIAKLFKRRHKRAMNLQGKKV 263

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig81.16355.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig81.16355.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JST5_9PHAE	0.000e+0	79.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G6Q3_ECTSI	3.030e-94	86.31	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 860..928 e-value: 1.2E-7 score: 33.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 867..923 e-value: 2.3E-4 score: 20.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 865..933 score: 9.746
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 986..1014 score: 11.836
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 853..923

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig81	contig	E-siliculosus-1a_M_contig81:633369..653758 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig81.16355.1	mRNA_E-siliculosus-1a_M_contig81.16355.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig81 633204..656734 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig81.16355.1 ID=prot_E-siliculosus-1a_M_contig81.16355.1|Name=mRNA_E-siliculosus-1a_M_contig81.16355.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1639bp
MPLTRRKAKEAEENRVPEIETSDADLLSGPDTAESLVSGPQSMKSEASVK
TEASVKTETSVKTETSVNKASIKTEGFSTEPTNDSGKPSPAPSSSTPTTP
KSGSDPLKSAASVGDGGAVSAPATAPAVAVTAAAPAAAPASAAAPSPSVP
SGTPKGSPAVAVKQQEENAQDSAETLSERGSAAGEGNLDDALSGALCAPR
NVGNPPPGAAVSSGEPAGNTSTEGMAGKDVPKPKVGITVEAGRKQEYWGG
QSEGMFRKRVSEELKAMLRSCGGRCEMSSIAKLFKRHHKRVLNLQGKKLR
ALLTTGSGLYGIGLYGHGQDGEIRLEEKSVVKDSNSDAATGPNSVGDGGS
TQPLTRTFVNQNALRNQDSRSRGRSPGGRGDSYDEPDQPPPGGAGHSSRS
ALVRPTSGPLGNSVGYARSRPDASGAPARSRRDGDARVGREWSRSRSPPP
RRRSRSRSRSWDKGVSGGHRRDERLRPAHGASRSSSRGRRFSRTTGRPSP
HERNSPQQRRRGRSPSPRGRIPSSRELSPRSSRGQRRGTTPPRRSSSRRN
SGNWRRSHSRSPRWRSPYRRGSPARRLSPSRRTTSPRRSSPRGIGGHDSA
ERGPTHRSREDHLDRSSDPRGRHRSTRPAADRDRDMPSRAVSSRKAARER
SLVRPEGDGMRPGDSARQGGCVGASRRSGRSASPVGYGTEPLRGTPEEAR
KGQENGSSTVGRGAVGGQMMDPVIPLALGGTPAPPVAAAVGGRPTIDPAI
PLAPGGAPVPALASSSGTRRLVEGTVGSGGGFPSNFDPPGKLYHAGAGPP
GSGDGYSVGSGHPMAGDWLNGDGGGGSQVGLGQGRAVPPHPAPALLPPPS
SLRPLPPMPVRAQGTRLMIKGTHPAVPERRIHALVSTFGVVGKIEVLEGF
VFVHMKSLEEATRAVTGLNGEVVPHVSPQASDGAGAASLPLAAAIWREEQ
YQAVMSRENMRIYADSIRRASTWYEKQTKSGFNDTLGEPMRCRFFILGRG
CIFGKNCGFSHDQRPPLPRAAASTHGVAGGPGFAAPLSKPPSVIPSPAFA
PTSSSRAGVVPNPFAQERVPVLAHHEQSPTLTFVHRHEMHRRSGPGAQED
LKPDPTGAYTGSGVGVASPWQPEHEAGGISGAGQVLPQPGATSARNVDRQ
EQTRGGTSSQPFPSPPTLRNGPGRMRSSASPTTNSGNTRRSGHQNKSHSH
GADGPGGGNGSDSGGGDSRRDRDGRNSGGRSSWREEPHGRISDRERNDTR
RSSPVSSRGRSRRDASPISAHARKRGRGSSSHRSSPPRISGGYEKNDDRV
SRYSRNGLQQPGRGHSGSRRSESLESVPGRGSRRHRLDGRPRQRRDSRST
SRPQSRDDRGDRNGRSSTRDERPYNRRRSRDNASPVGKGRRYRDDVSPVA
KGRRYESDSRDSNPDGRRSKKSRNERETSRGRGSDRPRREDSGGERGMFL
GRRGGGRRGSDNVSHGWASPADNPGAFSRGDHSRSYGGAPRGDFYNAGSS
GVPRREERYGADRSTSPNGSAGWDSMVKDEFMVKDEFIVDDPPRPIKTQF
TVTARLGSLQPPPVSAPAGAARPSTRFSITMPSNIAGALGPTSPSGGVRR
GGRPARGRGRGGRGDTRRDAANRRPPRDVQDDEGYTRQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000571	Znf_CCCH
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf