prot_E-siliculosus-1a_M_contig81.16325.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig81.16325.1
Unique Nameprot_E-siliculosus-1a_M_contig81.16325.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length100
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: D7G6S6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S6_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.390e-47
Identity = 76/90 (84.44%), Postives = 80/90 (88.89%), Query Frame = 0
Query:    1 MSEMAEGVKGQEAQDVGMGESGKGPEPGTEEEAPRQEVRTCLLCCNNLSDPSVKYQANPSKENAIGLIIATGRCGHVFHLDCIQGCLSHE 90
            MSEMA+G +GQEAQDVGMGESGKGPEPGTEEEAP QEVRTCLLC N L DPSVKYQANPSKENA GLIIATG C HVFHLDCIQ CL ++
Sbjct:    1 MSEMAKGAEGQEAQDVGMGESGKGPEPGTEEEAPWQEVRTCLLCFNKLRDPSVKYQANPSKENASGLIIATGSCWHVFHLDCIQRCLMNQ 90          
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: D7G6S7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6S7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 9.460e-27
Identity = 56/104 (53.85%), Postives = 65/104 (62.50%), Query Frame = 0
Query:    4 MAEGVKGQEAQDVGMGESGKGPEPGTEEEAPRQEVR---------------TCLLCCNNLSDPSVKYQANPSKENAIGLIIATGRCGHVFHLDCIQGCLSHEPV 92
            MA   KGQE QDV MGESGKGPEPG  + APR E++               TC +C N+L++PS++YQANPS  N  GL IA G CGHVFHLDCIQ  L    V
Sbjct:    1 MAAETKGQEPQDVVMGESGKGPEPGIGQVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSV 104          
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: A0A4D9CQ35_9STRA (RING-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQ35_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.180e-14
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 0
Query:   40 TCLLCCNNLSDPSVKYQANPSKENAIGLIIATGRCGHVFHLDCIQGCLSHEPV 92
            TC +C NNL++PS++YQANPS  N  GL IA G C HVFHLDCIQ  L    V
Sbjct:   64 TCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSV 116          
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: A0A830HL03_9CHLO (RING-box protein 1 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HL03_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.360e-12
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   40 TCLLCCNNLSDPSVKYQANPSKENAI-GLIIATGRCGHVFHLDCIQGCLSHEPV 92
            TC +C NNL +PS++YQANP+ +N   GL IA G CGHVFHLDCIQ  L    V
Sbjct:   46 TCAICRNNLYEPSIEYQANPTYDNDHPGLSIAWGCCGHVFHLDCIQRWLKTRSV 99          
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: A0A087SLR5_AUXPR (E3 ubiquitin-protein ligase RBX1 (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SLR5_AUXPR)

HSP 1 Score: 67.4 bits (163), Expect = 2.780e-12
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   40 TCLLCCNNLSDPSVKYQANPSKE-NAIGLIIATGRCGHVFHLDCIQGCLS 88
            TC +C NNL +PS++YQANPS + +  GL IA G CGHVFHLDCIQ  L 
Sbjct:   46 TCAICRNNLYEPSIEYQANPSGDPDHPGLSIAWGSCGHVFHLDCIQRWLK 95          
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: A0A5J4XZ32_9CHLO (RING-box 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XZ32_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 5.940e-12
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   40 TCLLCCNNLSDPSVKYQANPSKE-NAIGLIIATGRCGHVFHLDCIQGCLS 88
            TC +C NNL +PS++YQANP+ + +  GL IA G CGHVFHLDCIQ  L 
Sbjct:   49 TCAICRNNLYEPSIEYQANPTGDADHPGLSIAWGNCGHVFHLDCIQRWLK 98          
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: A0A250X7T1_9CHLO (RING-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X7T1_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 6.660e-12
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   40 TCLLCCNNLSDPSVKYQANPSKE-NAIGLIIATGRCGHVFHLDCIQGCLS 88
            TC +C NNL +PS++YQANP+ + +  GL IA G CGHVFHLDCIQ  L 
Sbjct:   53 TCAICRNNLYEPSIEYQANPTGDPDHPGLSIAWGNCGHVFHLDCIQRWLK 102          
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: A0A7S3FA03_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FA03_9VIRI)

HSP 1 Score: 66.2 bits (160), Expect = 6.810e-12
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   40 TCLLCCNNLSDPSVKYQANPSKE-NAIGLIIATGRCGHVFHLDCIQGCLS 88
            TC +C NNL +PS++YQANP+ + +  GL IA G CGHVFHLDCIQ  L 
Sbjct:   38 TCAICRNNLYEPSIEYQANPTGDPDHPGLSIAWGTCGHVFHLDCIQRWLK 87          
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: A0A7R9TV53_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TV53_9VIRI)

HSP 1 Score: 66.2 bits (160), Expect = 7.660e-12
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   40 TCLLCCNNLSDPSVKYQANPSKE-NAIGLIIATGRCGHVFHLDCIQGCLS 88
            TC +C NNL +PS++YQANP+ + +  GL IA G CGHVFHLDCIQ  L 
Sbjct:   44 TCAICRNNLYEPSIEYQANPTGDPDHPGLSIAWGTCGHVFHLDCIQRWLK 93          
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Match: A0A2P6VGN8_9CHLO (RING-box 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGN8_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 7.840e-12
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   40 TCLLCCNNLSDPSVKYQANPSKE-NAIGLIIATGRCGHVFHLDCIQGCLS 88
            TC +C NNL +PS++YQANP+ + +  GL IA G CGHVFHLDCIQ  L 
Sbjct:   48 TCAICRNNLYEPSIEYQANPTGDADHPGLSIAWGTCGHVFHLDCIQRWLK 97          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig81.16325.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G6S6_ECTSI1.390e-4784.44RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6S7_ECTSI9.460e-2753.85RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A4D9CQ35_9STRA3.180e-1460.38RING-type domain-containing protein n=3 Tax=Monodo... [more]
A0A830HL03_9CHLO1.360e-1259.26RING-box protein 1 n=1 Tax=Pycnococcus provasolii ... [more]
A0A087SLR5_AUXPR2.780e-1262.00E3 ubiquitin-protein ligase RBX1 (Fragment) n=2 Ta... [more]
A0A5J4XZ32_9CHLO5.940e-1260.00RING-box 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=260899... [more]
A0A250X7T1_9CHLO6.660e-1260.00RING-type domain-containing protein n=1 Tax=Chlamy... [more]
A0A7S3FA03_9VIRI6.810e-1260.00Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7R9TV53_9VIRI7.660e-1260.00Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A2P6VGN8_9CHLO7.840e-1260.00RING-box 1 n=1 Tax=Micractinium conductrix TaxID=5... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 40..88
e-value: 5.5E-10
score: 39.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 28..94
e-value: 3.6E-9
score: 38.2
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 40..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig81contigE-siliculosus-1a_M_contig81:310709..311770 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig81.16325.1mRNA_E-siliculosus-1a_M_contig81.16325.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig81 310709..313333 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig81.16325.1 ID=prot_E-siliculosus-1a_M_contig81.16325.1|Name=mRNA_E-siliculosus-1a_M_contig81.16325.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=100bp
MSEMAEGVKGQEAQDVGMGESGKGPEPGTEEEAPRQEVRTCLLCCNNLSD
PSVKYQANPSKENAIGLIIATGRCGHVFHLDCIQGCLSHEPVLVPYLRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR024766Znf_RING_H2