prot_E-siliculosus-1a_M_contig8.16202.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16202.1
Unique Nameprot_E-siliculosus-1a_M_contig8.16202.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length397
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig8.16202.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.590e-6
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 0 
Query:   48 ASGTTCSNGLAGVEDPLGKVCCAPSCPQCAGGGCGGFDGAL---CCETNVTASSIYCDVAQEAPCILGD 113
            ASGTTCSNGL+G+E   G VCC   C  C G GCG   G     CC + +   +  C V +EAPC++ +
Sbjct:   19 ASGTTCSNGLSGLEK--GGVCCPVECGTCGGTGCGSRPGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDE 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16202.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNF5_9PHAE3.590e-644.93MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 216..239
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 177..196
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..176
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 197..215
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 268..396
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 240..244
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 245..267
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availableTMHMMTMhelixcoord: 219..241
NoneNo IPR availableTMHMMTMhelixcoord: 245..267
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 176..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1952078..1956279 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16202.1mRNA_E-siliculosus-1a_M_contig8.16202.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig8 1950657..1956831 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig8.16202.1 ID=prot_E-siliculosus-1a_M_contig8.16202.1|Name=mRNA_E-siliculosus-1a_M_contig8.16202.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=397bp
MGSRNVRCWGSTAAAAAALASKVFLGSVGLGALPAVGVSAVAKPIPAASG
TTCSNGLAGVEDPLGKVCCAPSCPQCAGGGCGGFDGALCCETNVTASSIY
CDVAQEAPCILGDVPGSLSTLISSPKSPSVAPTLTPPSGALTPTTAPKEH
MPRGLPMPSISPTQAEGLDDGVAHTSIAAASVVGSFLLVVLVLTCAGLKS
HCDEKRKSIRRSLEALFARGSFWGAMFVLFGLLIALNIYNYSSPWAAVII
FGTFVIWFGVVAWFVAFQTGTPATVSLDCPCRASRTACRVEDGNSSDAGS
SSSRSSSRSSSRSSSACSTPANVASPKRPCSSRGRGGIKTPQAAVARCSA
PSPAAVRPAADSFFPETVVSAVYFPSSTHTVFVPSTTEKIAMATTA*
back to top