prot_E-siliculosus-1a_M_contig8.16146.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16146.1
Unique Nameprot_E-siliculosus-1a_M_contig8.16146.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length772
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16146.1 vs. uniprot
Match: D8LQD3_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQD3_ECTSI)

HSP 1 Score: 886 bits (2290), Expect = 1.870e-314
Identity = 712/772 (92.23%), Postives = 729/772 (94.43%), Query Frame = 0 
Query:    1 MLGKLLARGAVATQRRLAVASRRRRVASVSLSGGAPGTAATCAFDYAAVVPRRQLGTAVDFADTGFVEGSNNGVDGSSSNSGESPRQQWQRQGQEEPASAERRFEEEGEEGGQGLEEGSETAWGREDGNSSRGGRGRRGRRSXXXXXXXXXXXXESRGKTRTGQFIAEMQELKRTGDWIGIIDMYKQACDDENVTLNRVMINTTVAGLARSPRWQVSLSILQEMRDAATITPDAYTFNAALMACAHGRQDRLAFALLGEMREAGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRDNLEPNEYCXXXXXXXXXXXXXXXXXXXXXXXXHEAELIVTAGTYRHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAMVEKKAERRSVGYSPRSASPPAAQPGGEAAPHDSPFPEAAPDTEYASASASMTQQVPGSDAAFSAVASDAPPPAASTPAAAVEPSPRPRVHAVKHFLLSVGTLSRHRRWAEMLSELDHAIADPNTKVSLRMYEGCLAGLASGGKWVEALSVLERMESAGLKPSSRCVTAATKACAKANPPKWGLALSLVRGLEEPEVWTYVAALAALGKAGQWKASTTLLEEMRAEGVAPNLYCYNGALQACRMADPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEDDVAEALLSDMIAAGFATQAEELKSPPVAAAA-ECGGP 771
            MLGKLLARGAVATQRRLAVASRRRRVASV+L GGAPGTAATC FDYAAVVP+RQLGTAVD ADTGFVEGSNNGVDGS SNSGESPRQQWQRQGQEEPASAERRF        QGLEEGSE AWGRED +SSRGGRGRRGR SXXXXXXXXXXXXESRGKTRTGQFIAEMQELKRTGDWIGIIDMYKQACDDENVTLNRVMINTTVAGLARSPRWQVSLSI QEMRDAATITPDAYTFNAALMACAHGRQDRLAFALLGEMREAGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RDNLEPNEYCXXXXXXXXXXXXXXXXXXXXXXXX  AELIVTAGTY HV    XXXXXXXXXXXXXXXXXXXXXXXXXX VAMVE+KAERRSVG+ PRSASPP AQPGGEAAPHDSPFPEAA DTEY +ASAS TQQVP SDAAF AVASDAPPPAASTPAAAV P PRPRVHAVKHFL SVG+ SRHRRWAEMLSELDHAIADPNTKVSLRMYEGCL GL+SGGKWVEALSVLE+MESAGLKPS+RCVTAATKACAKANPPKWGLALSLVRGLEEPEVWTYVAALAALGKAGQWKAST LLEEMR EGV+PNLYCYNGAL++CR+ADPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASEDDVAE+LLSDMIAAGFATQAE+LK+PPVAAAA EC GP
Sbjct:    1 MLGKLLARGAVATQRRLAVASRRRRVASVNLWGGAPGTAATCTFDYAAVVPQRQLGTAVDSADTGFVEGSNNGVDGSFSNSGESPRQQWQRQGQEEPASAERRFXXXXXXXXQGLEEGSEAAWGREDDDSSRGGRGRRGRXSXXXXXXXXXXXXESRGKTRTGQFIAEMQELKRTGDWIGIIDMYKQACDDENVTLNRVMINTTVAGLARSPRWQVSLSIFQEMRDAATITPDAYTFNAALMACAHGRQDRLAFALLGEMREAGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNLEPNEYCXXXXXXXXXXXXXXXXXXXXXXXXXXAELIVTAGTYCHVVKTCXXXXXXXXXXXXXXXXXXXXXXXXXXTVAMVERKAERRSVGHRPRSASPPPAQPGGEAAPHDSPFPEAARDTEYVNASASWTQQVPRSDAAFPAVASDAPPPAASTPAAAVGPPPRPRVHAVKHFLRSVGSHSRHRRWAEMLSELDHAIADPNTKVSLRMYEGCLVGLSSGGKWVEALSVLEKMESAGLKPSARCVTAATKACAKANPPKWGLALSLVRGLEEPEVWTYVAALAALGKAGQWKASTALLEEMRTEGVSPNLYCYNGALESCRLADPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASEDDVAESLLSDMIAAGFATQAEKLKTPPVAAAAAECDGP 772
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16146.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQD3_ECTSI1.870e-31492.23PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 218..365
e-value: 1.8E-15
score: 56.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 155..278
e-value: 3.7E-19
score: 70.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 279..469
e-value: 5.7E-51
score: 175.7
coord: 581..765
e-value: 2.1E-31
score: 111.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 644..692
e-value: 2.6E-4
score: 21.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 581..613
e-value: 9.5E-5
score: 20.3
coord: 377..407
e-value: 1.9E-5
score: 22.5
coord: 235..269
e-value: 2.9E-4
score: 18.8
coord: 341..367
e-value: 7.2E-6
score: 23.9
coord: 305..338
e-value: 1.0E-5
score: 23.4
coord: 649..681
e-value: 3.1E-4
score: 18.7
coord: 270..304
e-value: 5.6E-6
score: 24.2
coord: 413..442
e-value: 4.2E-4
score: 18.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 413..441
e-value: 0.016
score: 15.4
coord: 378..404
e-value: 1.8E-4
score: 21.5
coord: 586..610
e-value: 0.044
score: 14.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 718..752
score: 7.114
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 578..612
score: 9.69
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 681..717
score: 7.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 338..368
score: 9.427
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 303..337
score: 10.545
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 197..231
score: 6.599
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 646..680
score: 10.019
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 10.106
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 233..267
score: 10.095
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 268..302
score: 11.422
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 410..444
score: 9.328
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 184..454
coord: 573..689

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1341730..1346009 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16146.1mRNA_E-siliculosus-1a_M_contig8.16146.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig8 1340505..1346135 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig8.16146.1 ID=prot_E-siliculosus-1a_M_contig8.16146.1|Name=mRNA_E-siliculosus-1a_M_contig8.16146.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=772bp
MLGKLLARGAVATQRRLAVASRRRRVASVSLSGGAPGTAATCAFDYAAVV
PRRQLGTAVDFADTGFVEGSNNGVDGSSSNSGESPRQQWQRQGQEEPASA
ERRFEEEGEEGGQGLEEGSETAWGREDGNSSRGGRGRRGRRSGKRFGRGG
GGGGESRGKTRTGQFIAEMQELKRTGDWIGIIDMYKQACDDENVTLNRVM
INTTVAGLARSPRWQVSLSILQEMRDAATITPDAYTFNAALMACAHGRQD
RLAFALLGEMREAGIKPDSFTFTHLATVCGHKGEWERAFSLIEEMRAEGI
RPNCVAYNAVIVACGNAGEHARAVGVLEQMREEGVQLTEGTYSAAIAACG
KAGQWEGAVDLLEEMKEGRDNLEPNEYCYNSAISACERASRWQEALALLR
EMHEAELIVTAGTYRHVVKACTNAGEISQARSLLDEMRENDMPVKKGTVA
MVEKKAERRSVGYSPRSASPPAAQPGGEAAPHDSPFPEAAPDTEYASASA
SMTQQVPGSDAAFSAVASDAPPPAASTPAAAVEPSPRPRVHAVKHFLLSV
GTLSRHRRWAEMLSELDHAIADPNTKVSLRMYEGCLAGLASGGKWVEALS
VLERMESAGLKPSSRCVTAATKACAKANPPKWGLALSLVRGLEEPEVWTY
VAALAALGKAGQWKASTTLLEEMRAEGVAPNLYCYNGALQACRMADPPQW
QHACSLLARMKEEGTAPNEVCYKTALHACRAASEDDVAEALLSDMIAAGF
ATQAEELKSPPVAAAAECGGP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long