prot_E-siliculosus-1a_M_contig8.16138.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig8.16138.1
Unique Name	prot_E-siliculosus-1a_M_contig8.16138.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	136

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: A0A6H5KWM4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWM4_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 5.620e-92
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 0

Query:    1 MTKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEPTVSN 135
            MTKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFE+EEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPAD+LEPTVS+
Sbjct:    1 MTKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFELEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADSLEPTVSD 135

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: A0A835Z2R3_9STRA (Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R3_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.280e-54
Identity = 81/129 (62.79%), Postives = 105/129 (81.40%), Query Frame = 0

Query:    7 PKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEPTVSN 135
            P+  +YVGGLEE VNEE+LHAAF+PFGD+VEV +P++  + T+RGFGFVE+E EEDA AA++NMDGAEL G+VLRVN AKP+KHKLGA  AVWSAD+W+KN + EGD+T  +  D++   DALEP  ++
Sbjct:    7 PRCTLYVGGLEENVNEELLHAAFIPFGDLVEVQIPREWKSGTNRGFGFVEYEAEEDASAAMENMDGAELAGRVLRVNRAKPLKHKLGAARAVWSADEWFKN-MAEGDETINMTADDMPQPDALEPVAAS 134

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: A0A7S2V6A5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6A5_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.860e-46
Identity = 72/124 (58.06%), Postives = 100/124 (80.65%), Query Frame = 0

Query:    8 KRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEP 131
            K+ VYVGGL+E+V EE+LHAAF+PFGDIVEVN+P+D   + +RGFGFV+FE E+DA AAI+NMDGAEL+G+VLR N A+P+KH+LGA   VWSA+DW+++ + +G+       + ++PAD+L P
Sbjct:   13 KKVVYVGGLDEKVVEEVLHAAFIPFGDIVEVNIPRDFQKDLNRGFGFVDFEDEKDASAAIENMDGAELFGRVLRCNLARPIKHRLGASKPVWSAEDWFQSNVKDGE----ADEENIDPADSLIP 132

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: I2CRH6_NANGC (RRM domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRH6_NANGC)

HSP 1 Score: 155 bits (391), Expect = 3.980e-46
Identity = 76/117 (64.96%), Postives = 90/117 (76.92%), Query Frame = 0

Query:    8 KRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELE 124
            K  VYVGGL+EQ  EE+LHAAF+PFGDIVEVN+PKD   NT RGFGFV FE  EDA AAIDNM+GAEL G+VL+ N A+PM+HKLGA+  VWS D+W+K+ L E  D     GD+LE
Sbjct:   11 KSIVYVGGLDEQCTEEMLHAAFIPFGDIVEVNIPKDFKENTTRGFGFVHFESAEDAAAAIDNMEGAELLGRVLKCNVARPMQHKLGANKPVWSTDEWFKSQLAEDKDL----GDQLE 123

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: A0A7S2H1G4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1G4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.580e-45
Identity = 74/123 (60.16%), Postives = 92/123 (74.80%), Query Frame = 0

Query:    8 KRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGD--ELEPADA 128
            KR++YVGGLEE+  EE+LHAAF+PFG++VEV +PKD   N +RGFGFVEF+ + DA  A+DNMDG+EL G+VLRVN AKP+ HKLGA  AVWS+D+W+K  L E  D A    D   L P DA
Sbjct:    8 KRSLYVGGLEEEATEELLHAAFIPFGNVVEVQIPKDFKDNKNRGFGFVEFDNDADAAEAMDNMDGSELLGRVLRVNIAKPITHKLGASKAVWSSDEWFKQNLKEDQDLADAQDDTDSLVPMDA 130

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: A0A7S2C0W9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0W9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.070e-44
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = 0

Query:    8 KRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEP 131
            KR +YVGGLEEQV+EE+LHAAF+PFG+I EV +PKD   NT+RGFGF+E+  +EDA  A+DNMDGAEL G+VLRVN AKPMK KLGA   VWS ++W +N+L E     +   D  E AD L P
Sbjct:   15 KRTLYVGGLEEQVDEELLHAAFIPFGNINEVQIPKDFKENTNRGFGFIEYTNDEDAAEAMDNMDGAELLGRVLRVNVAKPMKAKLGASKPVWSTEEWLQNSLKED----QALADAQEDADDLTP 134

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: A0A5J4Y598_9CHLO (Peptidyl-prolyl cis-trans isomerase E-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y598_9CHLO)

HSP 1 Score: 138 bits (348), Expect = 3.580e-39
Identity = 67/110 (60.91%), Postives = 81/110 (73.64%), Query Frame = 0

Query:    7 PKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLG----AHTAVWS-ADDWYKNTLVE 111
            PK  +YVGGLEE VNE ILH+AF+PFGDI +VN+P DH    HRGFGF+E+E ++DA  AIDNM  AELYG+VLR N A+PMK K G    +H AVW+ ADDWY+    E
Sbjct:   20 PKTTLYVGGLEENVNEAILHSAFIPFGDIKDVNIPLDHATGKHRGFGFIEYEAKDDAADAIDNMHNAELYGRVLRTNYAQPMKIKGGDKGFSHQAVWADADDWYERAEAE 129

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: A0A812XSP9_SYMMI (PPIE protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XSP9_SYMMI)

HSP 1 Score: 135 bits (341), Expect = 7.870e-39
Identity = 67/103 (65.05%), Postives = 79/103 (76.70%), Query Frame = 0

Query:   11 VYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGD 113
            VYVGGL+  VNEE LHAAF+PFGDI EVN+PKD   N HRGFGFV+FE  EDA AAI+NM+GAEL+GKVL+ N AKPM  KL    AVW+A++W  N+L   D
Sbjct:    1 VYVGGLDSGVNEETLHAAFIPFGDIREVNIPKDFAENKHRGFGFVDFEDAEDAAAAIENMNGAELFGKVLKCNMAKPMT-KLQPGQAVWTAEEWLSNSLKTDD 102

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: A0A1S3HFS1_LINUN (Peptidyl-prolyl cis-trans isomerase E n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HFS1_LINUN)

HSP 1 Score: 140 bits (352), Expect = 3.640e-38
Identity = 71/134 (52.99%), Postives = 92/134 (68.66%), Query Frame = 0

Query:    5 AQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKN----TLVEGDDTAKLAGDELEPADALEPTVS 134
            A  KR VYVGGL E+V+E+ILHAAF+PFGDIV++N+P D+    HRGF FVEFE+ EDA AAIDNM+ +EL+G+ +R N AKPMK K GA  AVWS D W +     TL +GD   +   +   PA+  E + +
Sbjct:    2 ASNKRIVYVGGLAEEVDEKILHAAFIPFGDIVDINIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNDSELFGRTVRTNLAKPMKIKEGASRAVWSEDSWLQEHAGETLSKGDKENEDETNNKRPAEEAEDSAA 135

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Match: A0A0C9RSU5_AMBAM (Putative cyclophilin-type peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9RSU5_AMBAM)

HSP 1 Score: 135 bits (340), Expect = 4.880e-38
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 0

Query:    8 KRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKN------TLVEGDDTAKLAGDELEPADALE 130
            KR VYVGGL E+V+E++LHAAF+PFGD+++V +P D+    HRGF FVEFE  EDA AAIDNM+ +EL+G+ +RVN AKPMK K G+  AVWS D W +          E D+ +K  G+    +DA E
Sbjct:    2 KRMVYVGGLAEEVDEKVLHAAFIPFGDVIDVQIPLDYETQKHRGFAFVEFEQAEDAAAAIDNMNDSELFGRTIRVNIAKPMKIKEGSTRAVWSEDSWLRQHAGETLNTKEDDEDSKEGGEADAESDAKE 130

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig8.16138.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KWM4_9PHAE	5.620e-92	97.78	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A835Z2R3_9STRA	1.280e-54	62.79	Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Trib...	[more]
A0A7S2V6A5_9STRA	3.860e-46	58.06	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
I2CRH6_NANGC	3.980e-46	64.96	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A7S2H1G4_9STRA	4.580e-45	60.16	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2C0W9_9STRA	3.070e-44	60.48	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A5J4Y598_9CHLO	3.580e-39	60.91	Peptidyl-prolyl cis-trans isomerase E-like n=1 Tax...	[more]
A0A812XSP9_SYMMI	7.870e-39	65.05	PPIE protein (Fragment) n=1 Tax=Symbiodinium micro...	[more]
A0A1S3HFS1_LINUN	3.640e-38	52.99	Peptidyl-prolyl cis-trans isomerase E n=2 Tax=Ling...	[more]
A0A0C9RSU5_AMBAM	4.880e-38	51.94	Putative cyclophilin-type peptidyl-prolyl cis-tran...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 10..83 e-value: 4.6E-24 score: 95.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..81 e-value: 2.5E-21 score: 75.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 9..87 score: 20.065
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..97 e-value: 1.4E-27 score: 98.2
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 9..87
None	No IPR available	PANTHER	PTHR13798:SF11		coord: 9..87
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..90

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig8	contig	E-siliculosus-1a_M_contig8:1239533..1242219 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig8.16138.1	mRNA_E-siliculosus-1a_M_contig8.16138.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig8 1239268..1243536 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig8.16138.1 ID=prot_E-siliculosus-1a_M_contig8.16138.1|Name=mRNA_E-siliculosus-1a_M_contig8.16138.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=136bp
MTKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHR
GFGFVEFEVEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWS
ADDWYKNTLVEGDDTAKLAGDELEPADALEPTVSN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom