prot_E-siliculosus-1a_M_contig8.16110.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig8.16110.1
Unique Name	prot_E-siliculosus-1a_M_contig8.16110.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	247

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16110.1 vs. uniprot
Match: D8LQG8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQG8_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 4.040e-155
Identity = 222/234 (94.87%), Postives = 228/234 (97.44%), Query Frame = 0

Query:   13 TRAALFLSASCAVLLRPATPFVRLAPPAGAADPAGVAHRQRHVRPVSARPHQARVLVNMMAEVDADIPGVADSRLAGWRVGSKEASTAAAEDTAAADSDADSEGGAGESGEPGCGDVVEYPLTDLVKNESPDGREKGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDSEEEGVWMADELETCAFAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCGARDAEWEYDML 246
            TRAALFLSASCA+LLRPATPF+RLAPPAGAADPAG AHRQRHVRPVSARPH ARVLVNMMAEVDAD+PG+ADSRLAGWRVGSK+A+T A EDTAA DSDADSEGGAGESGEPGCGDVVEYPLTDLVKNES DGREKGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDSEEEGVWMADELETCAFAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCGARDAEWEYDML
Sbjct:    2 TRAALFLSASCALLLRPATPFIRLAPPAGAADPAGAAHRQRHVRPVSARPHHARVLVNMMAEVDADVPGIADSRLAGWRVGSKQAATTATEDTAAVDSDADSEGGAGESGEPGCGDVVEYPLTDLVKNESTDGREKGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDSEEEGVWMADELETCAFAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCGARDAEWEYDML 235

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig8.16110.1 vs. uniprot
Match: A0A5J4YB18_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YB18_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 6.380e-6
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 0

Query:  111 DADSEGGAGESGEPGCGDVVEYPLTDLVKNESPDGREKGVAVIVSINKLRNDAWKLPEDILDKAELQVL 179
            D D +  + + G P  GDVVEYPL+++ + +  DGR  GV ++V  NK R DA KLP + L   E++ L
Sbjct:   44 DGDLDATSNDEGMPVMGDVVEYPLSEVTRQQLQDGRTHGVGLLVGRNKDRGDAKKLPAEALGLCEVEPL 112

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig8.16110.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig8.16110.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LQG8_ECTSI	4.040e-155	94.87	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A5J4YB18_9CHLO	6.380e-6	42.03	Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..45
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 15..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 28..45
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 46..246
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..14

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig8	contig	E-siliculosus-1a_M_contig8:948627..955259 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig8.16110.1	mRNA_E-siliculosus-1a_M_contig8.16110.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig8 948496..956070 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig8.16110.1 ID=prot_E-siliculosus-1a_M_contig8.16110.1|Name=mRNA_E-siliculosus-1a_M_contig8.16110.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=247bp
MMGSKTSRSGCTTRAALFLSASCAVLLRPATPFVRLAPPAGAADPAGVAH
RQRHVRPVSARPHQARVLVNMMAEVDADIPGVADSRLAGWRVGSKEASTA
AAEDTAAADSDADSEGGAGESGEPGCGDVVEYPLTDLVKNESPDGREKGV
AVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDSEEEGVWMADELETCA
FAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCGARDAEWEYDML*