prot_E-siliculosus-1a_M_contig8.16028.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig8.16028.1
Unique Name	prot_E-siliculosus-1a_M_contig8.16028.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	97

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: D1J7D7_ECTSI (Multifunctional fusion protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D7_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 2.180e-66
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC
Sbjct:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: RBS_ECTSI (Ribulose bisphosphate carboxylase small subunit n=136 Tax=Phaeophyceae TaxID=2870 RepID=RBS_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 6.250e-66
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MRVTQGCFSFLPDLSDDQIKQQV+YAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC
Sbjct:    1 MRVTQGCFSFLPDLSDDQIKQQVSYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: Q52Z36_9PHAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=1 Tax=Lessonia flavicans TaxID=169771 RepID=Q52Z36_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 9.260e-64
Identity = 88/94 (93.62%), Postives = 93/94 (98.94%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MRVTQGCFSFLPDLSD+QIK+QVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFD++DPAA+MYEL ECRKVNPEGYIKINAFDASIGTESC
Sbjct:    1 MRVTQGCFSFLPDLSDEQIKKQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESC 94

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: A0A0R6LUN5_UNDPI (Multifunctional fusion protein n=44 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN5_UNDPI)

HSP 1 Score: 194 bits (493), Expect = 2.850e-62
Identity = 87/94 (92.55%), Postives = 93/94 (98.94%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MRVTQGCFSFLPDL+D+QIK+QVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFD++D AA+MYELAECRKVNPEGYIKINAFDASIGTESC
Sbjct:    1 MRVTQGCFSFLPDLTDEQIKKQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDIQDAAALMYELAECRKVNPEGYIKINAFDASIGTESC 94

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: A0A0S0GBG1_COSCS (Multifunctional fusion protein n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GBG1_COSCS)

HSP 1 Score: 193 bits (491), Expect = 5.750e-62
Identity = 85/94 (90.43%), Postives = 93/94 (98.94%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MRVTQGCFSFLPDL+D+QIK+QVAYAM+KGWAVSVEWTDDPHPRN+YWELWGLPLFD++DPAA+MYEL ECRKVNPEGYIKINAFDASIGTESC
Sbjct:    1 MRVTQGCFSFLPDLTDEQIKKQVAYAMTKGWAVSVEWTDDPHPRNAYWELWGLPLFDIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESC 94

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: E8Z976_9PHAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=1 Tax=Sphacelaria solitaria TaxID=670098 RepID=E8Z976_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.810e-61
Identity = 83/94 (88.30%), Postives = 92/94 (97.87%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MR+TQGCFSFLPDLSD+QIK+QVAYA+ KGWAVSVEWTDDPHPRN+YWELWGLPLFD+KDPAA+MYEL ECR++NPEGYIKINAFDASIGTESC
Sbjct:    1 MRITQGCFSFLPDLSDEQIKKQVAYAIKKGWAVSVEWTDDPHPRNNYWELWGLPLFDIKDPAALMYELNECRRLNPEGYIKINAFDASIGTESC 94

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: Q52Z56_9PHAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=2 Tax=Chorda filum TaxID=64905 RepID=Q52Z56_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.300e-61
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MRVTQGCFSFLPDLSD+QI +QV YAM+KGWAVSVEWTDDPHPRNSYWELWGLPLFD+KDPAAVMYEL ECR+VNP+GYIKINAFDASIGTESC
Sbjct:    1 MRVTQGCFSFLPDLSDEQITKQVNYAMTKGWAVSVEWTDDPHPRNSYWELWGLPLFDIKDPAAVMYELNECRRVNPDGYIKINAFDASIGTESC 94

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: A0A1L2F1V1_9PHAE (Multifunctional fusion protein n=208 Tax=Fucales TaxID=3009 RepID=A0A1L2F1V1_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 7.500e-58
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MR+TQGCFSFLPDLSD+QIK QV YA+SKGWAVSVEWTDDPHPRN+YWELWGLPLFD+KD AAVMYEL ECR++NPEGYIKIN +DAS GTESC
Sbjct:    1 MRITQGCFSFLPDLSDEQIKNQVNYAISKGWAVSVEWTDDPHPRNAYWELWGLPLFDIKDSAAVMYELNECRRINPEGYIKINCYDASKGTESC 94

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BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: Q9GGQ1_VAULI (Multifunctional fusion protein n=2 Tax=PX clade TaxID=569578 RepID=Q9GGQ1_VAULI)

HSP 1 Score: 182 bits (463), Expect = 1.070e-57
Identity = 76/94 (80.85%), Postives = 91/94 (96.81%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MRVTQGCFSFLPDLSD+QIK+Q+ YA++KGWA+S+EW+DDPHPRN+YWELWGLPLFD+KD +AV+YE+ ECR+VNPEGY+KINAFDASIGTESC
Sbjct:    1 MRVTQGCFSFLPDLSDEQIKKQIEYAVNKGWAISIEWSDDPHPRNTYWELWGLPLFDIKDSSAVLYEITECRRVNPEGYMKINAFDASIGTESC 94

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Match: E8Z964_9PHAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=2 Tax=Dictyopteris repens TaxID=218863 RepID=E8Z964_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 5.250e-57
Identity = 78/94 (82.98%), Postives = 88/94 (93.62%), Query Frame = 0

Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESC 94
            MR+TQGCFSFLPDL+D+QI  QV YA+SKGWA+S+EWTDDPHPRNSYWELWGLPLFD+KD AAV+YEL +CR+VNPEGYIKINAFDAS GTESC
Sbjct:    1 MRITQGCFSFLPDLTDEQITSQVNYAISKGWAISIEWTDDPHPRNSYWELWGLPLFDIKDSAAVLYELNQCRRVNPEGYIKINAFDASKGTESC 94

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig8.16028.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D1J7D7_ECTSI	2.180e-66	100.00	Multifunctional fusion protein n=10 Tax=Phaeophyce...	[more]
RBS_ECTSI	6.250e-66	98.94	Ribulose bisphosphate carboxylase small subunit n=...	[more]
Q52Z36_9PHAE	9.260e-64	93.62	Ribulose-1,5-bisphosphate carboxylase/oxygenase sm...	[more]
A0A0R6LUN5_UNDPI	2.850e-62	92.55	Multifunctional fusion protein n=44 Tax=Laminarial...	[more]
A0A0S0GBG1_COSCS	5.750e-62	90.43	Multifunctional fusion protein n=33 Tax=Phaeophyce...	[more]
E8Z976_9PHAE	1.810e-61	88.30	Ribulose-1,5-bisphosphate carboxylase/oxygenase sm...	[more]
Q52Z56_9PHAE	3.300e-61	90.43	Ribulose-1,5-bisphosphate carboxylase/oxygenase sm...	[more]
A0A1L2F1V1_9PHAE	7.500e-58	85.11	Multifunctional fusion protein n=208 Tax=Fucales T...	[more]
Q9GGQ1_VAULI	1.070e-57	80.85	Multifunctional fusion protein n=2 Tax=PX clade Ta...	[more]
E8Z964_9PHAE	5.250e-57	82.98	Ribulose-1,5-bisphosphate carboxylase/oxygenase sm...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000894	Ribulose bisphosphate carboxylase small chain, domain	SMART	SM00961	RuBisCO_small_2_a	coord: 4..97 e-value: 2.9E-27 score: 106.6
IPR000894	Ribulose bisphosphate carboxylase small chain, domain	PFAM	PF00101	RuBisCO_small	coord: 5..89 e-value: 6.5E-34 score: 115.8
IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	GENE3D	3.30.190.10		coord: 1..96 e-value: 5.6E-37 score: 128.6
IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	SUPERFAMILY	55239	RuBisCO, small subunit	coord: 1..95
None	No IPR available	PANTHER	PTHR31262:SF0		coord: 7..96
None	No IPR available	PANTHER	PTHR31262	FAMILY NOT NAMED	coord: 7..96

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig8	contig	E-siliculosus-1a_M_contig8:335..625 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig8.16028.1	mRNA_E-siliculosus-1a_M_contig8.16028.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig8 335..625 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig8.16028.1 ID=prot_E-siliculosus-1a_M_contig8.16028.1|Name=mRNA_E-siliculosus-1a_M_contig8.16028.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=97bp
MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWEL
WGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCRFN

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036385	RuBisCO_ssu_sf
IPR000894	RuBisCO_sc_dom