prot_E-siliculosus-1a_M_contig79.15957.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig79.15957.1
Unique Nameprot_E-siliculosus-1a_M_contig79.15957.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length219
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 2.140e-131
Identity = 204/224 (91.07%), Postives = 204/224 (91.07%), Query Frame = 0
Query:    1 MFRTVLATIAPRATAASRSRAASG--RCAPFTAFATRRSSLS----SPSPPGGQSLPLDCAAAVTIRYVPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQXXXXXXXXRDARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLPRLDDI 218
            M RTVLATIAPRATAASRSRAASG  RCAPFTAFATRR S S    SPSP GGQSLPLDCAAAVTIR VPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQ        R ARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLPRLDDI
Sbjct:    1 MLRTVLATIAPRATAASRSRAASGPGRCAPFTAFATRRPSPSPSRFSPSPQGGQSLPLDCAAAVTIRSVPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQQGEMGSSGRYARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLPRLDDI 224          
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: A0A8J5XMV1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XMV1_DIALT)

HSP 1 Score: 72.8 bits (177), Expect = 2.060e-13
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0
Query:  137 KFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLP 213
            K  G+VIS  M +++ V VPYW+ V+RL  RI+R++K+MAHDE  S   GDTV L   +  SKRK H +++I+++ P
Sbjct:    5 KLIGQVISAKMQQSVVVKVPYWHVVQRLQMRIVRHTKLMAHDELESRE-GDTVQLKQSRPYSKRKHHKVIEILKRAP 80          
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: W4QJJ8_9BACI (30S ribosomal protein S17 n=6 Tax=Bacillaceae TaxID=186817 RepID=W4QJJ8_9BACI)

HSP 1 Score: 64.7 bits (156), Expect = 2.680e-10
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 0
Query:  138 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 209
            + G+V+SD MDKTI V V  +   R  GKR+    K  AHDEENSA VGD V +++ +  SK K+  L++IV
Sbjct:    9 YTGRVVSDKMDKTISVLVETYKKDRLYGKRVKYSKKFKAHDEENSAKVGDIVKIMETRPLSKDKRFRLVEIV 80          
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: A0A7S2GQL6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GQL6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.790e-10
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0
Query:  138 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVR 210
              G V+SD M KT+ VAV  +  V + GKR+    K MAHDEE    +GD V++V CQQ SKRK   + +I+R
Sbjct:  139 LVGTVVSDKMQKTVNVAVDRYRIVPKYGKRLKYTRKFMAHDEEEVCGMGDVVMIVPCQQISKRKHFMVREIIR 211          
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: A0A1D2QTM8_9GAMM (30S ribosomal protein S17 n=1 Tax=Candidatus Endobugula sertula TaxID=62101 RepID=A0A1D2QTM8_9GAMM)

HSP 1 Score: 64.7 bits (156), Expect = 3.120e-10
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 0
Query:  130 EKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKI 208
            E+ KK +   GKV+SD MDKTI V +         GK + + SK+ AHDEENS N+GD V + + +  SK K   L+KI
Sbjct:    7 EQNKKARTLMGKVVSDKMDKTITVLIERRVKHPIYGKYMSKSSKLKAHDEENSCNIGDVVTIAESRPLSKSKTWALVKI 85          
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: A0A4D6WZL6_9FLOR (30S ribosomal protein S17, chloroplastic n=1 Tax=Plumaria plumosa TaxID=189642 RepID=A0A4D6WZL6_9FLOR)

HSP 1 Score: 63.5 bits (153), Expect = 6.290e-10
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0
Query:  134 KVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKL 212
            K +K  G V+S+NM+KTI VAV      ++ GK  I+ +K  AHDE N+ N+GD V + + +  SK K   L+K++RK+
Sbjct:    2 KQKKTFGMVVSNNMNKTIVVAVKKQVSHKKYGKIFIKTNKYYAHDENNTCNIGDIVQIQETRPLSKNKHWMLIKLIRKI 80          
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: A0A0S7Z531_9GAMM (30S ribosomal protein S17 n=1 Tax=Gammaproteobacteria bacterium SG8_30 TaxID=1703404 RepID=A0A0S7Z531_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 6.570e-10
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0
Query:  138 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 209
              G V+S+ MDKTI VAV         GK + R +K++AHDE N  N GDTV +  C+  SKRK  TL+++V
Sbjct:   18 LSGTVVSNKMDKTITVAVERVMKHPTYGKYVRRTTKLLAHDENNECNEGDTVDIAQCRPLSKRKAWTLVRVV 89          
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: A0A651GBH4_9BACT (30S ribosomal protein S17 n=3 Tax=Balneolaceae TaxID=1813606 RepID=A0A651GBH4_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 7.500e-10
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 0
Query:  140 GKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRK 211
            GKV+SD MDK+I VAV         GK I + +K MAHDE N AN GDTV+++  +  SKRK   L+ I+ +
Sbjct:   14 GKVVSDRMDKSITVAVDRQIKHPIYGKFITKTTKYMAHDENNDANTGDTVLIMSTRPLSKRKSWRLVDIIER 85          
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: UPI00195E68FA (30S ribosomal protein S17 n=3 Tax=Gracilibacillus TaxID=74385 RepID=UPI00195E68FA)

HSP 1 Score: 63.5 bits (153), Expect = 7.500e-10
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 0
Query:  138 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 209
            + G+V+SD MDKTI V V  + +    GKR+    K  AHDE N+A +GD V +++ + +SK K+  LL++V
Sbjct:   10 YTGRVVSDKMDKTITVVVETYKFHNLYGKRVKYSKKFKAHDENNTAKIGDIVRIMETRPQSKTKRFRLLEVV 81          
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Match: A0A1G0F8I5_9GAMM (30S ribosomal protein S17 n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_13 TaxID=1798271 RepID=A0A1G0F8I5_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 1.020e-9
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 0
Query:  129 LEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKL 212
            + + K+V+   GKVIS+ MDKTI VA+      R   K + R +K+ AHDE+N+  +GD V +V+ + KSK K   L ++V ++
Sbjct:    1 MTEQKRVKTLTGKVISNKMDKTIVVAIERQVTHRLYKKSVKRTTKIHAHDEDNTCEIGDIVKIVETRPKSKTKAWALAEVVERI 84          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig79.15957.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ53_ECTSI2.140e-13191.07Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A8J5XMV1_DIALT2.060e-1346.75Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
W4QJJ8_9BACI2.680e-1047.2230S ribosomal protein S17 n=6 Tax=Bacillaceae TaxI... [more]
A0A7S2GQL6_9STRA2.790e-1046.58Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A1D2QTM8_9GAMM3.120e-1044.3030S ribosomal protein S17 n=1 Tax=Candidatus Endob... [more]
A0A4D6WZL6_9FLOR6.290e-1041.7730S ribosomal protein S17, chloroplastic n=1 Tax=P... [more]
A0A0S7Z531_9GAMM6.570e-1045.8330S ribosomal protein S17 n=1 Tax=Gammaproteobacte... [more]
A0A651GBH4_9BACT7.500e-1047.2230S ribosomal protein S17 n=3 Tax=Balneolaceae Tax... [more]
UPI00195E68FA7.500e-1041.6730S ribosomal protein S17 n=3 Tax=Gracilibacillus ... [more]
A0A1G0F8I5_9GAMM1.020e-939.2930S ribosomal protein S17 n=1 Tax=Gammaproteobacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 132..212
e-value: 1.4E-22
score: 81.2
NoneNo IPR availablePANTHERPTHR10744:SF137S RIBOSOMAL PROTEIN S17, MITOCHONDRIALcoord: 134..211
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..218
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePRODOMPD001295coord: 140..205
e-value: 4.0E-9
score: 146.0
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 140..207
e-value: 1.2E-21
score: 76.5
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 134..211
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 136..213

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig79contigE-siliculosus-1a_M_contig79:100506..103139 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig79.15957.1mRNA_E-siliculosus-1a_M_contig79.15957.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig79 99886..103139 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig79.15957.1 ID=prot_E-siliculosus-1a_M_contig79.15957.1|Name=mRNA_E-siliculosus-1a_M_contig79.15957.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=219bp
MFRTVLATIAPRATAASRSRAASGRCAPFTAFATRRSSLSSPSPPGGQSL
PLDCAAAVTIRYVPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQQG
EMGSSGRDARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKT
IKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKR
KKHTLLKIVRKLPRLDDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR000266Ribosomal_S17/S11