prot_E-siliculosus-1a_M_contig783.15942.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig783.15942.1
Unique Name	prot_E-siliculosus-1a_M_contig783.15942.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	120

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: E6ZES0_ECTSI (Ribosomal protein S13 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES0_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.400e-73
Identity = 112/119 (94.12%), Postives = 118/119 (99.16%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNVN 119
            MPYIIGTSIPEDKVLVQS+SHIYG+GSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLG+DLRRFQN+KIRRLCSISTYRG RH+KGLPVRGQRTHTNAK+RPSLKLNVN
Sbjct:    1 MPYIIGTSIPEDKVLVQSLSHIYGLGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGSDLRRFQNNKIRRLCSISTYRGLRHKKGLPVRGQRTHTNAKKRPSLKLNVN 119

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: A0A0U1XDT6_9PHAE (Ribosomal protein S13 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A0U1XDT6_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 2.150e-68
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNVN 119
            MPYIIGTSIPEDKVLVQSI+HIYG+G SQSKNLCKKAGFGSDSRG D++F KGK++EN AEAT LPLGADLRRFQNDKIRRLC +STYRGSRHRKGLPVRGQRTHTNAK+RP LKLNVN
Sbjct:    1 MPYIIGTSIPEDKVLVQSIAHIYGLGLSQSKNLCKKAGFGSDSRGRDVSFFKGKMIENLAEATPLPLGADLRRFQNDKIRRLCVLSTYRGSRHRKGLPVRGQRTHTNAKKRPLLKLNVN 119

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: A0A3S8PTX7_9PHAE (Ribosomal protein S13 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A3S8PTX7_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 7.200e-67
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNVN 119
            MPYIIGTSIPEDKVLVQS++HIYG+GSSQSKNLCKKAGFGSDSRGS +TF KGK LEN AE+T LPLG DLRR QNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAK+RP  KLNVN
Sbjct:    1 MPYIIGTSIPEDKVLVQSLTHIYGLGSSQSKNLCKKAGFGSDSRGSHVTFSKGKTLENLAESTLLPLGPDLRRLQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKKRPLPKLNVN 119

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: A0A7U1G3I7_9PHAE (Ribosomal protein S13 n=8 Tax=Laminariales TaxID=2886 RepID=A0A7U1G3I7_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.700e-65
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNV 118
            MP+IIGTSIPEDKVLVQS+SHIYGIG SQSK LCKKAGFGSDSRGS +TF KGK LEN AEAT LPLGADLRRF+NDKIRRLC +STYRG RHRKGLPVRGQRTHTNAK+RPSLKLNV
Sbjct:    1 MPFIIGTSIPEDKVLVQSVSHIYGIGLSQSKILCKKAGFGSDSRGSHVTFTKGKNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTYRGLRHRKGLPVRGQRTHTNAKKRPSLKLNV 118

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: D0IPU7_SACAN (Ribosomal protein S13 n=45 Tax=Laminariales TaxID=2886 RepID=D0IPU7_SACAN)

HSP 1 Score: 202 bits (513), Expect = 3.430e-65
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNV 118
            MP+IIGT IPEDKVLVQSISHIYGIG SQSK LCKKAGFGSDSRGS +TFLKG+ LEN AEAT LPLGADLRRF+NDKIRRLC +STYRG RHRKGLPVRGQRTHTNAK+RPSLKLNV
Sbjct:    1 MPFIIGTPIPEDKVLVQSISHIYGIGLSQSKILCKKAGFGSDSRGSHVTFLKGRNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTYRGLRHRKGLPVRGQRTHTNAKKRPSLKLNV 118

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: A0A1I9LW64_9PHAE (Ribosomal protein S13 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW64_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 4.870e-65
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNV 118
            MPYIIGTSIPE+KVLVQS+  IYG+G SQSKNLCKKAGFGSD+RGSD+TFLKGK+LENFAEAT LP GADLRRFQND+I  LC+ISTYRGSRHRKGLPVRGQRTHTNAK+RP LK NV
Sbjct:    1 MPYIIGTSIPEEKVLVQSMCDIYGLGLSQSKNLCKKAGFGSDARGSDVTFLKGKVLENFAEATLLPFGADLRRFQNDRIYHLCNISTYRGSRHRKGLPVRGQRTHTNAKKRPLLKFNV 118

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: A0A3G5FPN8_9PHAE (Ribosomal protein S13 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPN8_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.400e-64
Identity = 98/119 (82.35%), Postives = 110/119 (92.44%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNVN 119
            MPYIIGTSIPEDKVLVQS+SH+YG+G +QS NLCKKAGFGSDSRGSD++F KG+ILE  AE  S+PLGADLRRFQN+KIRRLC +STYRGSRHRKGLPVRGQRTHTN+K+RP LKLNVN
Sbjct:    1 MPYIIGTSIPEDKVLVQSLSHVYGLGLTQSVNLCKKAGFGSDSRGSDVSFSKGQILEKLAEGASIPLGADLRRFQNNKIRRLCLLSTYRGSRHRKGLPVRGQRTHTNSKKRPPLKLNVN 119

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: A0A8F0FDF8_9PHAE (Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FDF8_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 2.820e-64
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNV 118
            MP+IIGTSIPEDK+LVQS+SHIYG+G SQSK LCKKAGFGSDSRGS +TF KG+ILEN AEAT LPLGADLRRFQNDKIRRLC +S+YRGSRHRKGLPVRGQRTHTNAK+R  LKLNV
Sbjct:    1 MPFIIGTSIPEDKILVQSVSHIYGLGLSQSKVLCKKAGFGSDSRGSHVTFSKGRILENLAEATPLPLGADLRRFQNDKIRRLCVLSSYRGSRHRKGLPVRGQRTHTNAKKRALLKLNV 118

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: A0A0U1XCC6_SCYLO (Ribosomal protein S13 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCC6_SCYLO)

HSP 1 Score: 199 bits (505), Expect = 6.060e-64
Identity = 100/118 (84.75%), Postives = 108/118 (91.53%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNV 118
            MPYIIGT IPE+KVLVQS+SHIYGIG  QSK LCKKAGFGSDSRG D++F KGKILEN AE TSLPLGADLRRFQNDKIRRLC++STYRGSRHRKGLPVRGQRTHTN+K+RP  KLNV
Sbjct:    1 MPYIIGTPIPEEKVLVQSLSHIYGIGLYQSKILCKKAGFGSDSRGKDVSFPKGKILENLAEGTSLPLGADLRRFQNDKIRRLCALSTYRGSRHRKGLPVRGQRTHTNSKKRPIPKLNV 118

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BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Match: Q2TUF4_9PHAE (Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF4_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.630e-63
Identity = 101/119 (84.87%), Postives = 107/119 (89.92%), Query Frame = 0

Query:    1 MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVRGQRTHTNAKRRPSLKLNVN 119
            MP+IIGTSIPEDKVLVQS++HIYGIG SQSK LCKKAGFGSDSRG ++TF KGK LEN AEA  LPLG DLRRFQNDKIRRLC ISTYRGSRHRKGLPVRGQRTHTNAK+RP LK NVN
Sbjct:    1 MPFIIGTSIPEDKVLVQSVAHIYGIGLSQSKILCKKAGFGSDSRGRNVTFSKGKNLENLAEAIPLPLGPDLRRFQNDKIRRLCLISTYRGSRHRKGLPVRGQRTHTNAKKRPLLKSNVN 119

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig783.15942.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
E6ZES0_ECTSI	1.400e-73	94.12	Ribosomal protein S13 n=2 Tax=Ectocarpus siliculos...	[more]
A0A0U1XDT6_9PHAE	2.150e-68	87.39	Ribosomal protein S13 n=2 Tax=Scytosiphonaceae Tax...	[more]
A0A3S8PTX7_9PHAE	7.200e-67	87.39	Ribosomal protein S13 n=2 Tax=Endarachne binghamia...	[more]
A0A7U1G3I7_9PHAE	1.700e-65	87.29	Ribosomal protein S13 n=8 Tax=Laminariales TaxID=2...	[more]
D0IPU7_SACAN	3.430e-65	87.29	Ribosomal protein S13 n=45 Tax=Laminariales TaxID=...	[more]
A0A1I9LW64_9PHAE	4.870e-65	84.75	Ribosomal protein S13 n=1 Tax=Pleurocladia lacustr...	[more]
A0A3G5FPN8_9PHAE	1.400e-64	82.35	Ribosomal protein S13 n=1 Tax=Cladosiphon okamuran...	[more]
A0A8F0FDF8_9PHAE	2.820e-64	84.75	Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii ...	[more]
A0A0U1XCC6_SCYLO	6.060e-64	84.75	Ribosomal protein S13 n=1 Tax=Scytosiphon lomentar...	[more]
Q2TUF4_9PHAE	1.630e-63	84.87	Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.50		coord: 1..73 e-value: 3.8E-10 score: 41.8
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 3..117
IPR001892	Ribosomal protein S13	PIRSF	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 1..119 e-value: 2.2E-34 score: 116.2
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 4..110 e-value: 1.2E-18 score: 67.7
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 4..111 score: 27.97
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10		coord: 76..118 e-value: 2.9E-17 score: 63.8
IPR019980	Ribosomal protein S13, bacterial-type	PANTHER	PTHR10871:SF1	37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL	coord: 3..117
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 89..102
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 3..114

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig783	contig	E-siliculosus-1a_M_contig783:4159..4518 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig783.15942.1	mRNA_E-siliculosus-1a_M_contig783.15942.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig783 4159..4625 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig783.15942.1 ID=prot_E-siliculosus-1a_M_contig783.15942.1|Name=mRNA_E-siliculosus-1a_M_contig783.15942.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=120bp
MPYIIGTSIPEDKVLVQSISHIYGIGSSQSKNLCKKAGFGSDSRGSDITF
LKGKILENFAEATSLPLGADLRRFQNDKIRRLCSISTYRGSRHRKGLPVR
GQRTHTNAKRRPSLKLNVN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010979	Ribosomal_S13-like_H2TH
IPR018269	Ribosomal_S13_CS
IPR019980	Ribosomal_S13_bac-type
IPR027437	30s_Rbsml_prot_S13_C
IPR001892	Ribosomal_S13