prot_E-siliculosus-1a_M_contig77.15856.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig77.15856.1
Unique Nameprot_E-siliculosus-1a_M_contig77.15856.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length1228
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15856.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 691 bits (1782), Expect = 7.880e-230
Identity = 783/905 (86.52%), Postives = 792/905 (87.51%), Query Frame = 0 
Query:  326 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---STSASGXXXXXXXXXXXXXXXXXXXHGWESSVAAAVAAVPVILELVRETTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVGGXXXXXXXXXXXXQDDSRGDDASLNGNGL 1227
            MRRKLEAQD LGVIE MRASSR PPRLSGGA A +K EVGRGDGGVGWAP EETYGLALEACGKVRKRWGFKA LFLIQEMRD NLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV              VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MKKK  VKPDNVTYNTVINALGRCGRVKEATVHLHAMKE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAEAERLV  MRGQGL+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVER GV                              + + LH +    G +            CV  N  +  AGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKRQADRPPEQTCYKTMLRVCERAGFA QAVEYLKEMPAAGVPPTLS FKQAL     ATSRGLTGGR   STS   XXXXXXXXXXXXXXXXX  HGWES VAAAVAAVPVILELVRE TGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVG      XXXXXXXQD +RGDDA LNG+GL
Sbjct:    1 MRRKLEAQDYLGVIEAMRASSRAPPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV--------------VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAEAERLVTGMRGQGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVERGGVKPNLFAYNHAMSACVRFSPPYS--------RRKELHGEGGGQGAV-------SPTSFCVPANLPVFEAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKRQADRPPEQTCYKTMLRVCERAGFACQAVEYLKEMPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSXXXXXXXXXXXXXXXXXXXXGRHGWESGVAAAVAAVPVILELVREMTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVG------XXXXXXXQDGNRGDDAPLNGDGL 870
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15856.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 567 bits (1461), Expect = 5.260e-185
Identity = 381/488 (78.07%), Postives = 389/488 (79.71%), Query Frame = 0 
Query:   68 MRSPWMMAASPAAEGPAAPTASSCVAGSRSRTSSRRLRRQRSIAPCSALAYDVGEKRMLPDDARDALAQGDVFRALLLLEDDPAGNVETTEAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AGTGPSPRAAHARLIQLLWKAGHEKEALETFDLAAARAREAXXXXXXXXXXXXXXXXXXXXXXX---APPFPNGEXXXXXXXXXXXQAASANADADAXXXXXAAFSAAQQLRRTAAAARHGAGVPGLYLDLDPDTCHGIMRRKLEAQDCLGVIEVMRASSRVPPRLSGGAVAASKHEVGRGDGGVGWAPAEETYGLALEACGKVRKRWGFKAALFLIQEMRDANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNV--------------------------------------------KRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 506
            MRSPWMMAASPAAEGPAA T      G R+ +SSRRLRRQRSIAPCSALAYDVGEKR+L DDARDALAQGDVFRALLLLEDDPA NVETTEAPS         XXXXXXXXXXXXXXXXXXX  AG GPSPRAAHARLIQLLWKAGHE+EALETFDLAAARAREAXXXXXXXXXXXXXXXXXXXXXXX   A PFPNGE           QAA        XXXXX A SA QQLRRTAAAARHG GVPGLYL+LDPDTCHGIMRRKLEAQD LGVIEVMRASSRVPPRLSGGA A +K +VGRGDGGVGWAP EETYGLALEACGKVRKRWGFKAALFLIQEMR+ANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNV                                            KRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL
Sbjct:    1 MRSPWMMAASPAAEGPAAATXXXXXXGGRN-SSSRRLRRQRSIAPCSALAYDVGEKRVLSDDARDALAQGDVFRALLLLEDDPACNVETTEAPSSTATATIIDXXXXXXXXXXXXXXXXXXXXXAGIGPSPRAAHARLIQLLWKAGHEREALETFDLAAARAREAXXXXXXXXXXXXXXXXXXXXXXXXXXARPFPNGEQ----------QAAXXXXXXXXXXXXXXALSATQQLRRTAAAARHGTGVPGLYLELDPDTCHGIMRRKLEAQDYLGVIEVMRASSRVPPRLSGGAAAVAK-QVGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNVRTWMGRXXXXXXXXXXXXXXKRLPTELLDHLTSRPYRRTERYAVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 476
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15856.1 vs. uniprot
Match: A0A6H5LFN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFN9_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 4.750e-50
Identity = 138/159 (86.79%), Postives = 141/159 (88.68%), Query Frame = 0 
Query: 1074 MPAAGVPPTLSAFKQALXXXXXATSRGLTGGR---STSASGXXXXXXXXXXXXXXXXXXXHGWESSVAAAVAAVPVILELVRETTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVGGXXXXXXXXXXXX--QDDSRGDDASLNGNGL 1227
            MPAAGVPPTLS FKQAL     ATSRGLTGGR   STSAS XXXXXXXXXXXXXXXXXX HGWES V AAVAAVPVILELVRETTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMV GXXXXXXXXXXXX  QD++R DD SLNG+GL
Sbjct:    1 MPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSASRXXXXXXXXXXXXXXXXXXRHGWESGVTAAVAAVPVILELVRETTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVRGXXXXXXXXXXXXXXQDENRADDVSLNGDGL 159
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig77.15856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FY15_ECTSI7.880e-23086.52PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0B1_9PHAE5.260e-18578.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LFN9_9PHAE4.750e-5086.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 331..461
e-value: 9.5E-12
score: 46.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 462..586
e-value: 1.1E-28
score: 102.6
coord: 671..791
e-value: 8.4E-26
score: 93.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 792..860
e-value: 4.1E-14
score: 54.5
coord: 587..654
e-value: 1.0E-16
score: 63.0
coord: 861..934
e-value: 3.6E-19
score: 71.0
coord: 935..1008
e-value: 1.6E-10
score: 42.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 799..1036
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 509..564
e-value: 2.0E-5
score: 24.6
coord: 893..953
e-value: 3.7E-7
score: 30.1
coord: 437..495
e-value: 9.2E-11
score: 41.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 834..881
e-value: 7.1E-10
score: 38.9
coord: 623..671
e-value: 2.2E-13
score: 50.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 1017..1037
e-value: 0.95
score: 9.9
coord: 592..618
e-value: 1.4E-4
score: 21.9
coord: 1050..1079
e-value: 0.022
score: 15.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 872..906
e-value: 6.9E-9
score: 33.4
coord: 766..800
e-value: 6.9E-5
score: 20.8
coord: 521..554
e-value: 1.2E-4
score: 20.1
coord: 838..870
e-value: 7.5E-6
score: 23.8
coord: 626..660
e-value: 7.4E-7
score: 27.0
coord: 731..764
e-value: 1.1E-5
score: 23.3
coord: 592..624
e-value: 3.2E-5
score: 21.8
coord: 944..976
e-value: 5.6E-5
score: 21.1
coord: 485..518
e-value: 3.5E-5
score: 21.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1160..1194
score: 6.314
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 835..869
score: 11.597
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 376..413
score: 6.369
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 588..618
score: 9.635
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 870..904
score: 12.222
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 449..482
score: 7.158
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 624..658
score: 12.299
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1047..1081
score: 9.514
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 976..1010
score: 8.462
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 799..833
score: 8.254
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 764..798
score: 9.92
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 518..552
score: 11.488
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 553..587
score: 6.621
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 414..448
score: 7.07
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 905..940
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 694..728
score: 7.563
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 729..763
score: 10.008
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 941..975
score: 9.975
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 659..693
score: 11.126
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1011..1045
score: 8.649
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 483..517
score: 9.953
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 702..826
e-value: 8.2E-8
score: 31.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 909..1091
coord: 568..742
coord: 200..582
coord: 795..916
coord: 679..810
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..1227
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig77contigE-siliculosus-1a_M_contig77:714812..729989 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig77.15856.1mRNA_E-siliculosus-1a_M_contig77.15856.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig77 714539..730115 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig77.15856.1 ID=prot_E-siliculosus-1a_M_contig77.15856.1|Name=mRNA_E-siliculosus-1a_M_contig77.15856.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1228bp
MRPTGGLSTGVGGTASAVQVRSSGSSSGPPPPPYAWVQSCGGSALPGPGA
RDVRADAKLSVRATRVEMRSPWMMAASPAAEGPAAPTASSCVAGSRSRTS
SRRLRRQRSIAPCSALAYDVGEKRMLPDDARDALAQGDVFRALLLLEDDP
AGNVETTEAPSSTATTKIIDDQQLPAAAAAAAAAAAAAAAGTGPSPRAAH
ARLIQLLWKAGHEKEALETFDLAAARAREAATAAAATSASSWQPQQQQEQ
QQQAPPFPNGEQQTRPFPNGEQQAASANADADAAAAEAAAFSAAQQLRRT
AAAARHGAGVPGLYLDLDPDTCHGIMRRKLEAQDCLGVIEVMRASSRVPP
RLSGGAVAASKHEVGRGDGGVGWAPAEETYGLALEACGKVRKRWGFKAAL
FLIQEMRDANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV
ATYDAAISSCTTKNVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCW
ATGLELMGMMEEEGITPNPYHYNSMFMALERGERWREAAELFRKMRASGT
RPNALTYAPLIGVMDRCNKQDMAGAVLKEMLRESPRDSTREYNLLLNACA
KARKWEHAQLVFEDMKKKTDVKPDNVTYNTVINALGRCGRVKEATVHLHA
MKEQGLSPDVVTFGTLIHACAQSAKREPALALFAELVSRGLKPNLEAYKG
CIVSCHKTGHYQQGLDLFDRMLADKVRMDRVVFNTAIACCAQLKLWRRGV
AMLDEMRERKVAPDQYSYNSAIYGCVKAQQSQQMTMVLARMREDGFDPDV
WTYSNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVG
EWAEAERLVMEMRGQGLSPDKYTYNSLIYAYGNSGEWEKALSMLEEIRAA
GFKVNCMAYSAAIKACDKAFQWERALELLDRMVERDGVKPNLFAYNHAMS
ACVRGQQPEVALELLDRMKAEGLHMDRMTYGVLMFLHSRKGDHEECVRVN
QQMETAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKRQADRPPEQTC
YKTMLRVCERAGFASQAVEYLKEMPAAGVPPTLSAFKQALKACERATSRG
LTGGRSTSASGSRSSGRAASSSLSGEGGGRHGWESSVAAAVAAVPVILEL
VRETTGLSPDDDCYSSAMRACQNAGMGDAGSELMDDLQAQSAVRRMVGGG
GTGTGGGGGGGQDDSRGDDASLNGNGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf