prot_E-siliculosus-1a_M_contig77.15823.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig77.15823.1
Unique Nameprot_E-siliculosus-1a_M_contig77.15823.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length293
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: D8LT06_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT06_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 9.780e-135
Identity = 268/293 (91.47%), Postives = 269/293 (91.81%), Query Frame = 0 
Query:    1 MKRAREESSPSIVGKEQPARSVEGKGEKGPAGGSAVDATSS-PQQSSKKPAVXXXXXXXXXXXXXEVKDGDRNAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEEVAPPPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGAYGDGAKIPPPPGAGGETGAAAGVTKLSLDKKVALLKLKLREAQKAAGKR 292
            MKRAREE SPS+VGKEQPARSVEGKGEK PAGGSAVDATSS PQQSSKKPAV    XXX      EVKDGDRNAP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       GEEEVAPPPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFG YGDGAKIPP PGAGGE GAAAGVTKLSLDKKVALLKLKLREAQKAAGKR
Sbjct:    1 MKRAREEISPSMVGKEQPARSVEGKGEKVPAGGSAVDATSSNPQQSSKKPAVAGAAXXXT-----EVKDGDRNAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------GEEEVAPPPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGTYGDGAKIPPTPGAGGEAGAAAGVTKLSLDKKVALLKLKLREAQKAAGKR 281
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: A0A6H5KKT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.890e-30
Identity = 131/147 (89.12%), Postives = 133/147 (90.48%), Query Frame = 0 
Query:    1 MKRAREESSPSIVGKEQPARSVEGKGEKGPAGGSAVDATSSPQQSSKKPAVXXXXXXXXXXXXXEVKDGDRNAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEEVAPPPDVEGIPNETLFVGNLSYR 147
            MKRAREESSPS+VGKEQPA SV+GKGEK   G SAVDATSSPQQSSKKPAVXXXXXXX      EVKDGDRNAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GEEEVAPPPDVEGIPNETLFVGNLSYR
Sbjct:    1 MKRAREESSPSMVGKEQPAPSVKGKGEKSSGGESAVDATSSPQQSSKKPAVXXXXXXX------EVKDGDRNAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GEEEVAPPPDVEGIPNETLFVGNLSYR 138
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: A0A565CPV0_9BRAS (RRM domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CPV0_9BRAS)

HSP 1 Score: 95.1 bits (235), Expect = 2.160e-20
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0 
Query:  129 PDVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRF 215
            PD  G  +E     L+VGNL  R++EA ++K+F+P+GK++ E F +H  GP+ GEPRG+ FV+YS  ++A  A+  +HGR   GRPL VRF
Sbjct:    2 PDTGGFVDEKNESRLYVGNLDLRINEAALLKMFSPYGKIISEDFLWHTRGPKKGEPRGYAFVQYSRKEEAEVAVEKMHGRLACGRPLVVRF 92
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: A0A6P3Z2K5_ZIZJJ (probable RNA-binding protein 18 isoform X1 n=4 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3Z2K5_ZIZJJ)

HSP 1 Score: 95.1 bits (235), Expect = 3.080e-20
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 0 
Query:  139 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKG-----STATSGS 240
            L++GNL  R++EA +IK+F+PFGK+V E F +H  GP+ GEPRGF F++YS  ++A  A   +HGR   GRPL VR  +   K  MD +   SKG      T+TSGS
Sbjct:   15 LYIGNLDLRITEATLIKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTKEEARLAKEKMHGRLACGRPLVVRLASE--KYLMDSAENCSKGIGEANRTSTSGS 119
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: A0A169WBX9_DAUCS (RRM domain-containing protein n=3 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A169WBX9_DAUCS)

HSP 1 Score: 95.5 bits (236), Expect = 3.120e-20
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:  139 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMT----VEGKGRMD 225
            L++GNL +R++EA +IK+F+PFG +V E F +H  GP+ GEPRG+ FV+Y  V++A  A   +HG+ +YGRPL VR  +    V+G G  D
Sbjct:   45 LYIGNLDFRITEAALIKMFSPFGTIVSEDFLWHTRGPKRGEPRGYAFVQYRTVEEAKLAKEKVHGKLVYGRPLVVRLASEKDLVDGAGSSD 135
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: A0A803MKS2_CHEQI (RRM domain-containing protein n=4 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MKS2_CHEQI)

HSP 1 Score: 94.4 bits (233), Expect = 5.580e-20
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 0 
Query:  130 DVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVR 214
            D+ G+ NET    ++VGN+ +R+SEA ++K+F+PFGK+  E F  H  GP+ GEPRGF FV+YS  ++A  A   +HGR   GRPL VR
Sbjct:   12 DLNGMSNETSDRRIYVGNIDHRISEATLLKMFSPFGKIESEDFLLHTRGPKRGEPRGFAFVQYSTKEEARLAKEKMHGRLACGRPLVVR 100
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: A0A7C9DAW6_OPUST (RRM domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DAW6_OPUST)

HSP 1 Score: 94.0 bits (232), Expect = 5.880e-20
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 0 
Query:  130 DVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMT----VEGKGRMDYSTTDSKGSTATSGSFGAYGDGAKI 250
            D+ G+ +E+    L+VGN+ +R+SEA +IK+F+PFGK+  E F  H  GP+ GEPRGF FV+YS   +A  A   +HGR   GRPL VR  +    VE    +  ++  +  ST++S S G     AKI
Sbjct:    2 DLNGLSDESSERRLYVGNIDHRISEATLIKMFSPFGKIESEDFLLHTRGPKRGEPRGFAFVQYSTKWEARLAKEKMHGRLACGRPLVVRLASEKSAVEAAENLSKTSVVTNRSTSSSSSSGPMSRSAKI 130
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: UPI00109F2394 (probable RNA-binding protein 18 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F2394)

HSP 1 Score: 93.2 bits (230), Expect = 1.340e-19
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 0 
Query:  131 VEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRF 215
            V+      L+VGNL  R++EA +IK+F+PFGK++ E F +H  GP+ GEPRG+ F++YS+ ++A  A   ++GR  YGRPL VRF
Sbjct:    2 VDDTTESRLYVGNLDQRITEANVIKIFSPFGKIISEDFLWHTRGPKKGEPRGYVFIQYSSKEEAQLAKTEMNGRLAYGRPLVVRF 86
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: A0A6P5ZPS3_DURZI (probable RNA-binding protein 18 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZPS3_DURZI)

HSP 1 Score: 93.2 bits (230), Expect = 1.940e-19
Identity = 43/104 (41.35%), Postives = 69/104 (66.35%), Query Frame = 0 
Query:  139 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFG 242
            L+VGNL  R++EA +IK+F+P+GK++ E F +H  GP+ GEPRGF F++Y+  ++A  A   +HGR   GRPL VR  + +    + ++++ + G T  SG+ G
Sbjct:   40 LYVGNLDLRITEAALIKMFSPYGKIISEDFLWHMRGPKRGEPRGFAFIQYNTKEEAKLAKEKMHGRLACGRPLVVRLASEKYWEEVAHNSSKAGGDTIKSGTAG 143
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Match: A0A4D8Y803_SALSN (RRM domain-containing protein n=4 Tax=Salvia TaxID=21880 RepID=A0A4D8Y803_SALSN)

HSP 1 Score: 92.8 bits (229), Expect = 1.960e-19
Identity = 44/105 (41.90%), Postives = 69/105 (65.71%), Query Frame = 0 
Query:  139 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVE-GKGRMDYSTTDSKGSTATSGSFG 242
            L+VGNL  R++EA +IK+F+PFGK+V E + +H  GP+ GEPRG+ F+++S+ ++A +A   +HGR   GRPL VR  + +   G +++S T     +  SG  G
Sbjct:   15 LYVGNLDLRITEAALIKMFSPFGKIVSEDYLWHTCGPKRGEPRGYAFIQFSSKEEAIRAKEEMHGRMACGRPLVVRLASEKYPDGAVNHSKTSEGSRSLLSGGSG 119
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig77.15823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT06_ECTSI9.780e-13591.47RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KKT1_9PHAE2.890e-3089.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A565CPV0_9BRAS2.160e-2047.25RRM domain-containing protein n=1 Tax=Arabis nemor... [more]
A0A6P3Z2K5_ZIZJJ3.080e-2047.66probable RNA-binding protein 18 isoform X1 n=4 Tax... [more]
A0A169WBX9_DAUCS3.120e-2047.25RRM domain-containing protein n=3 Tax=Daucus carot... [more]
A0A803MKS2_CHEQI5.580e-2049.44RRM domain-containing protein n=4 Tax=Chenopodium ... [more]
A0A7C9DAW6_OPUST5.880e-2041.86RRM domain-containing protein n=1 Tax=Opuntia stre... [more]
UPI00109F23941.340e-1948.24probable RNA-binding protein 18 n=1 Tax=Dendrobium... [more]
A0A6P5ZPS3_DURZI1.940e-1941.35probable RNA-binding protein 18 n=1 Tax=Durio zibe... [more]
A0A4D8Y803_SALSN1.960e-1941.90RRM domain-containing protein n=4 Tax=Salvia TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 138..214
e-value: 1.3E-24
score: 97.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 139..212
e-value: 4.4E-17
score: 61.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 137..218
score: 17.609
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 138..214
e-value: 1.6E-7
score: 41.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 53..225
e-value: 1.4E-27
score: 98.6
NoneNo IPR availablePANTHERPTHR21245:SF2RNA-BINDING PROTEIN 18-RELATEDcoord: 70..237
NoneNo IPR availablePANTHERPTHR21245FAMILY NOT NAMEDcoord: 70..237
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 128..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig77contigE-siliculosus-1a_M_contig77:260439..267943 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig77.15823.1mRNA_E-siliculosus-1a_M_contig77.15823.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig77 260439..269746 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig77.15823.1 ID=prot_E-siliculosus-1a_M_contig77.15823.1|Name=mRNA_E-siliculosus-1a_M_contig77.15823.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=293bp
MKRAREESSPSIVGKEQPARSVEGKGEKGPAGGSAVDATSSPQQSSKKPA
VAAAATTTTTTTTTEVKDGDRNAPAASSSSSSSSSSSSSSRSGSSSAAGA
GAGGAKAGAGPGKGAAAAAAGEEEVAPPPDVEGIPNETLFVGNLSYRVSE
AVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRA
LHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGAYGDGAKI
PPPPGAGGETGAAAGVTKLSLDKKVALLKLKLREAQKAAGKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR003954RRM_dom_euk
IPR000504RRM_dom