prot_E-siliculosus-1a_M_contig77.15804.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig77.15804.1
Unique Nameprot_E-siliculosus-1a_M_contig77.15804.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length111
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15804.1 vs. uniprot
Match: A0A6H5JU77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU77_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.990e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 
Query:   24 AVPSAVFWTALPAALLLGLAPAVCFAVGFKRRTDALWK 61
            AVPSAVFWTALPAALLLG+APAVCFAVGFKRRTDALWK
Sbjct:  609 AVPSAVFWTALPAALLLGIAPAVCFAVGFKRRTDALWK 646
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BLAST of mRNA_E-siliculosus-1a_M_contig77.15804.1 vs. uniprot
Match: A0A6H5JYD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD9_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.090e-5
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0 
Query:   63 VKDRDAEIVRMCHEQQASQGGISAAA 88
            +KDRDAEIVRMCHEQQASQGGISA A
Sbjct:    1 MKDRDAEIVRMCHEQQASQGGISALA 26
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig77.15804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU77_9PHAE1.990e-1497.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD9_9PHAE2.090e-592.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..111
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..28
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 30..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig77contigE-siliculosus-1a_M_contig77:29602..31329 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig77.15804.1mRNA_E-siliculosus-1a_M_contig77.15804.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig77 29602..31329 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig77.15804.1 ID=prot_E-siliculosus-1a_M_contig77.15804.1|Name=mRNA_E-siliculosus-1a_M_contig77.15804.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=111bp
ADAATAAAAAAAAAAATTGAGGGAVPSAVFWTALPAALLLGLAPAVCFAV
GFKRRTDALWKSVKDRDAEIVRMCHEQQASQGGISAAARSRYPGESWRAR
RCWPAWHGWRP
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