prot_E-siliculosus-1a_M_contig767.15798.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig767.15798.1
Unique Nameprot_E-siliculosus-1a_M_contig767.15798.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length45
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig767.15798.1 vs. uniprot
Match: D1J7C3_ECTSI (Probable RuBisCO transcriptional regulator n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7C3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 9.550e-18
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0
Query:    1 TSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELV 44
            T+KHLKLSQPAVSLQLKQLQQ+IYSKILIRKKNEIYFTPEGELV
Sbjct:   26 TAKHLKLSQPAVSLQLKQLQQDIYSKILIRKKNEIYFTPEGELV 69          
BLAST of mRNA_E-siliculosus-1a_M_contig767.15798.1 vs. uniprot
Match: A0A5A4MHG3_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Hapterophycus canaliculatus TaxID=2567908 RepID=A0A5A4MHG3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-11
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    2 SKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELV 44
            +K L LSQPA+SLQ+K L++N+YSKILIRKK +IYFTPEGEL+
Sbjct:   27 AKFLYLSQPALSLQIKNLEENLYSKILIRKKKQIYFTPEGELI 69          
BLAST of mRNA_E-siliculosus-1a_M_contig767.15798.1 vs. uniprot
Match: A0A6B7IJB9_9PHAE (Probable RuBisCO transcriptional regulator n=4 Tax=Scytosiphon TaxID=27966 RepID=A0A6B7IJB9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.320e-10
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 0
Query:    2 SKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELV 44
            +K L LSQPA+SLQ+K L++N+YSKIL RKK +IYFTPEGEL+
Sbjct:   27 AKILYLSQPALSLQIKSLEKNLYSKILRRKKKQIYFTPEGELI 69          
BLAST of mRNA_E-siliculosus-1a_M_contig767.15798.1 vs. uniprot
Match: A0A6B7EV91_9PHAE (Putative RuBisCO transcriptional regulator n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV91_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.980e-8
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0
Query:    2 SKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELV 44
            SK+L LSQP +S ++K  Q N YSKIL+RKKN+IYFT EGELV
Sbjct:   29 SKNLYLSQPTLSSKIKIFQHNPYSKILVRKKNQIYFTSEGELV 71          
BLAST of mRNA_E-siliculosus-1a_M_contig767.15798.1 vs. uniprot
Match: A0A1I9LVC7_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVC7_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.320e-7
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    1 TSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELV 44
            T+K L LSQ ++  Q+K L+QN YSKILIRKKN++Y T EGEL+
Sbjct:   26 TAKKLYLSQSSLIAQIKNLEQNTYSKILIRKKNQLYLTNEGELI 69          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig767.15798.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D1J7C3_ECTSI9.550e-1895.45Probable RuBisCO transcriptional regulator n=2 Tax... [more]
A0A5A4MHG3_9PHAE1.740e-1172.09Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A6B7IJB9_9PHAE4.320e-1069.77Probable RuBisCO transcriptional regulator n=4 Tax... [more]
A0A6B7EV91_9PHAE1.980e-867.44Putative RuBisCO transcriptional regulator n=1 Tax... [more]
A0A1I9LVC7_9PHAE1.320e-761.36Probable RuBisCO transcriptional regulator n=1 Tax... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000847Transcription regulator HTH, LysRPFAMPF00126HTH_1coord: 3..42
e-value: 6.5E-7
score: 29.2
IPR000847Transcription regulator HTH, LysRPROSITEPS50931HTH_LYSRcoord: 1..38
score: 10.154
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..44
e-value: 1.5E-8
score: 36.0
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 2..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig767contigE-siliculosus-1a_M_contig767:7005..7139 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig767.15798.1mRNA_E-siliculosus-1a_M_contig767.15798.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig767 7005..7139 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig767.15798.1 ID=prot_E-siliculosus-1a_M_contig767.15798.1|Name=mRNA_E-siliculosus-1a_M_contig767.15798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=45bp
TSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR036388WH-like_DNA-bd_sf
IPR000847Tscrpt_reg_HTH_LysR