prot_E-siliculosus-1a_M_contig76.15705.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig76.15705.1
Unique Nameprot_E-siliculosus-1a_M_contig76.15705.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length123
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig76.15705.1 vs. uniprot
Match: A0A6H5JNR4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNR4_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.190e-72
Identity = 116/122 (95.08%), Postives = 119/122 (97.54%), Query Frame = 0 
Query:    1 MSKAAAPARAVASRAAPAAPKRGMAGGAAPKYTGWEAQIREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 122
            MSKAAAPARAVASRAAPA PKRGMAGGAAP+YTGWEAQIREKLPKDEHVVVAISGFYVGLYV+ KGISALFSSP+K EVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ
Sbjct:    7 MSKAAAPARAVASRAAPAVPKRGMAGGAAPEYTGWEAQIREKLPKDEHVVVAISGFYVGLYVLVKGISALFSSPEK-EVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATIDKAQ 127
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BLAST of mRNA_E-siliculosus-1a_M_contig76.15705.1 vs. uniprot
Match: A0A6U4IDD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IDD0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.460e-8
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 0 
Query:   20 PKRGMAGGAAPKYTGWEAQ--IREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATID 119
            PKR   GGAA +Y        +R+ LP+D HVV+AI G Y  LY++ K    LFS  K          +S +SS +    ++ F +W+   GN+EKY   ++
Sbjct:   28 PKR-FGGGAAVEYEPGSPDYIVRQYLPEDRHVVMAICGGYFSLYLLSK----LFSGGKXXXXXXXXXPASTSSSGVKSMADEGFAEWIAVDGNIEKYFKAVE 124
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BLAST of mRNA_E-siliculosus-1a_M_contig76.15705.1 vs. uniprot
Match: A0A7R9UII2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UII2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.050e-8
Identity = 38/105 (36.19%), Postives = 55/105 (52.38%), Query Frame = 0 
Query:   20 PKRGMAGGAAPKYTGWEAQ--IREKLPKDEHVVVAISGFYVGLYVVCKGISALFSSPKKKEV---AAPVVASSATSSDIPDGYEDNFWQWLEGAGNMEKYLATID 119
            PKR  AGGA  +Y        +R+ LP D+ +VVAI   Y G+Y+    +S LFS   KKE    AAP  A++  +  +    ++ F  W+   GN EKYL + +
Sbjct:   39 PKR-FAGGAPTEYAPGSLDYIVRQYLPHDKQIVVAIVSGYFGIYL----LSTLFSGGSKKEETAEAAPAPAAAPAAGGVLSMEDEGFGDWIMQEGNFEKYLNSFE 138
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig76.15705.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNR4_9PHAE1.190e-7295.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U4IDD0_9STRA2.460e-835.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UII2_9STRA6.050e-836.19Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..48
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..122
NoneNo IPR availableTMHMMTMhelixcoord: 49..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig76contigE-siliculosus-1a_M_contig76:40258..42334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig76.15705.1mRNA_E-siliculosus-1a_M_contig76.15705.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig76 40258..42334 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig76.15705.1 ID=prot_E-siliculosus-1a_M_contig76.15705.1|Name=mRNA_E-siliculosus-1a_M_contig76.15705.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=123bp
MSKAAAPARAVASRAAPAAPKRGMAGGAAPKYTGWEAQIREKLPKDEHVV
VAISGFYVGLYVVCKGISALFSSPKKKEVAAPVVASSATSSDIPDGYEDN
FWQWLEGAGNMEKYLATIDKAQ*
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