prot_E-siliculosus-1a_M_contig75.15683.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15683.1
Unique Nameprot_E-siliculosus-1a_M_contig75.15683.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length194
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig75.15683.1 vs. uniprot
Match: D8LF43_ECTSI (RPA_interact_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF43_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 4.300e-92
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 0 
Query:   53 MVDEDELGWGDGGGAEDYCDEEKLLSPDEYLEMMQYIEEACKEEDLRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHRRA 192
            MVDEDELGWGDGGGAED CDEE LLSPDEYLEMMQYIEEACKEED RAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEH  A
Sbjct:    1 MVDEDELGWGDGGGAEDDCDEEHLLSPDEYLEMMQYIEEACKEEDFRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTA 140
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BLAST of mRNA_E-siliculosus-1a_M_contig75.15683.1 vs. uniprot
Match: A0A6H5KTE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.270e-34
Identity = 89/103 (86.41%), Postives = 91/103 (88.35%), Query Frame = 0 
Query:    1 MSTSLREQTQGFEEGNSDDDDALMAHDGGDAQQPRXXXXXXXXXXXXXXXEAMVDEDELGWGDGGGAEDYCDEEKLLSPDEYLEMMQYIEEACKEEDLRAEAA 103
            MS S REQTQGF EGN+D+DDALMAHD G AQ   XXXXXXXXXXXXXXX  MVDEDELGWGDGGGAED CDEE LLSPDEYLEMMQYIEEACKEEDLRAEAA
Sbjct:  214 MSISFREQTQGFVEGNNDEDDALMAHDDGHAQXXXXXXXXXXXXXXXXXX--MVDEDELGWGDGGGAEDCCDEENLLSPDEYLEMMQYIEEACKEEDLRAEAA 314
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BLAST of mRNA_E-siliculosus-1a_M_contig75.15683.1 vs. uniprot
Match: A0A835YX80_9STRA (Replication protein A interacting C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX80_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.550e-12
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 0 
Query:   75 KLLSPDEYLEMMQYIEEACKEEDLRAEAAVLEDYELTRRLEEEE------VEYAVASLDDINGNG-QDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHR 190
            + L+P+EY +MM +IE+A   E  RA+A+                        A A+ +  +G G +DD VLCPVCK  +LL  G   A+I+C CGFRL T G+ + L   +Q LA+ +++HR
Sbjct:    3 RKLTPEEYTDMMLFIEQALAAELARADASXXXXXXXXXXXXXXXXXXXXXAALARAAAEAEDGRGWRDDEVLCPVCKGGWLLQHG---ATIMCTCGFRLQTDGEGMQLGVLRQALAEVFTDHR 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15683.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LF43_ECTSI4.300e-9296.43RPA_interact_C domain-containing protein n=1 Tax=E... [more]
A0A6H5KTE2_9PHAE4.270e-3486.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YX80_9STRA5.550e-1236.59Replication protein A interacting C-terminal-domai... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028159RPA-interacting protein, C-terminal domainPFAMPF14768RPA_interact_Ccoord: 139..191
e-value: 1.8E-11
score: 44.4
IPR028156RPA-interacting proteinPANTHERPTHR31742FAMILY NOT NAMEDcoord: 41..191
NoneNo IPR availablePRODOMPD472859coord: 126..189
e-value: 0.001
score: 98.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:753141..754642 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15683.1mRNA_E-siliculosus-1a_M_contig75.15683.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig75 752132..754891 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig75.15683.1 ID=prot_E-siliculosus-1a_M_contig75.15683.1|Name=mRNA_E-siliculosus-1a_M_contig75.15683.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=194bp
MSTSLREQTQGFEEGNSDDDDALMAHDGGDAQQPRQPQQRQQQQQQPQQP
EAMVDEDELGWGDGGGAEDYCDEEKLLSPDEYLEMMQYIEEACKEEDLRA
EAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLH
PGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHRRAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028156RIP
IPR028159RPA_interact_C_dom